PDB Short entry for 3FYC HEADER TRANSFERASE 22-JAN-09 3FYC TITLE CRYSTAL STRUCTURE OF DIM1 FROM THE THERMOPHILIC ARCHEON, TITLE 2 METHANOCALDOCOCCUS JANNASCHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DIMETHYLADENOSINE TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-ADENOSYLMETHIONINE-6-N',N'-ADENOSYL(RRNA) COMPND 5 DIMETHYLTRANSFERASE, 16S RRNA DIMETHYLASE; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: KSGA, MJ1029; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DIMETHYLADENOSINE TRANSFERASE, ROSSMANN FOLD, RNA METHYLASE, KEYWDS 2 RIBOSOMAL ASSEMBLY, METHYLTRANSFERASE, RNA-BINDING, RRNA PROCESSING, KEYWDS 3 S-ADENOSYL-L-METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.N.SCARSDALE,F.N.MUSAYEV,J.P.RIFE REVDAT 4 06-SEP-23 3FYC 1 REMARK SEQADV REVDAT 3 12-NOV-14 3FYC 1 KEYWDS REVDAT 2 01-SEP-09 3FYC 1 JRNL REVDAT 1 30-JUN-09 3FYC 0 JRNL AUTH N.PULICHERLA,L.A.POGORZALA,Z.XU,H.C.O FARRELL,F.N.MUSAYEV, JRNL AUTH 2 J.N.SCARSDALE,E.A.SIA,G.M.CULVER,J.P.RIFE JRNL TITL STRUCTURAL AND FUNCTIONAL DIVERGENCE WITHIN THE DIM1/KSGA JRNL TITL 2 FAMILY OF RRNA METHYLTRANSFERASES. JRNL REF J.MOL.BIOL. V. 391 884 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19520088 JRNL DOI 10.1016/J.JMB.2009.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 25730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1840 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.26000 REMARK 3 B22 (A**2) : 3.05000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.370 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4430 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5990 ; 1.123 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 5.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;35.084 ;25.369 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 831 ;15.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3271 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2097 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3092 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 268 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2766 ; 0.823 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4354 ; 1.680 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 2.692 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1636 ; 4.135 ; 9.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX CONFOCAL OPTICS REMARK 200 OPTICS : RIGAKU VARIMAX CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 32.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.620 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.65 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: COMPOSITE MODEL CONSISTING OF MONOMERS FROM PDB REMARK 200 ENTRIES 1QYR, 2H1R AND 1ZQ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 (18%), 25 MM MES, 50 MM REMARK 280 NA2HPO4, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.13700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 THR A 238 OG1 CG2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 LYS B 243 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 245 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 108.09 -55.93 REMARK 500 CYS A 11 76.87 44.79 REMARK 500 CYS A 11 81.45 37.68 REMARK 500 PRO A 169 -18.28 -48.27 REMARK 500 LYS A 170 111.78 89.72 REMARK 500 ASN A 239 71.25 -104.29 REMARK 500 ALA B 9 113.61 55.69 REMARK 500 ASP B 94 59.41 -102.35 REMARK 500 ASP B 94 32.28 -96.96 REMARK 500 ASN B 239 72.02 -101.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QYR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF KSGA FROM E. COLI. REMARK 900 RELATED ID: 2H1R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DIMETHYLADENOSINE TRANSFERASE FROM P. REMARK 900 FALCIPARUM REMARK 900 RELATED ID: 1ZQ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DIMETHYLADENOSINE TRANSFERASE DBREF 3FYC A 10 272 UNP Q58435 KSGA_METJA 10 272 DBREF 3FYC B 10 272 UNP Q58435 KSGA_METJA 10 272 SEQADV 3FYC ALA A 8 UNP Q58435 EXPRESSION TAG SEQADV 3FYC ALA A 9 UNP Q58435 EXPRESSION TAG SEQADV 3FYC ALA B 8 UNP Q58435 EXPRESSION TAG SEQADV 3FYC ALA B 9 UNP Q58435 EXPRESSION TAG SEQRES 1 A 265 ALA ALA GLN CYS PHE LEU ILE ASP LYS ASN PHE VAL ASN SEQRES 2 A 265 LYS ALA VAL GLU SER ALA ASN LEU THR LYS ASP ASP VAL SEQRES 3 A 265 VAL LEU GLU ILE GLY LEU GLY LYS GLY ILE LEU THR GLU SEQRES 4 A 265 GLU LEU ALA LYS ASN ALA LYS LYS VAL TYR VAL ILE GLU SEQRES 5 A 265 ILE ASP LYS SER LEU GLU PRO TYR ALA ASN LYS LEU LYS SEQRES 6 A 265 GLU LEU TYR ASN ASN ILE GLU ILE ILE TRP GLY ASP ALA SEQRES 7 A 265 LEU LYS VAL ASP LEU ASN LYS LEU ASP PHE ASN LYS VAL SEQRES 8 A 265 VAL ALA ASN LEU PRO TYR GLN ILE SER SER PRO ILE THR SEQRES 9 A 265 PHE LYS LEU ILE LYS ARG GLY PHE ASP LEU ALA VAL LEU SEQRES 10 A 265 MET TYR GLN TYR GLU PHE ALA LYS ARG MET VAL ALA LYS SEQRES 11 A 265 GLU GLY THR LYS ASP TYR GLY ARG LEU SER VAL ALA VAL SEQRES 12 A 265 GLN SER ARG ALA ASP VAL GLU ILE VAL ALA LYS VAL PRO SEQRES 13 A 265 PRO SER ALA PHE TYR PRO LYS PRO LYS VAL TYR SER ALA SEQRES 14 A 265 ILE VAL LYS ILE LYS PRO ASN LYS GLY LYS TYR HIS ILE SEQRES 15 A 265 GLU ASN GLU ASN PHE PHE ASP ASP PHE LEU ARG ALA ILE SEQRES 16 A 265 PHE GLN HIS ARG ASN LYS SER VAL ARG LYS ALA LEU ILE SEQRES 17 A 265 ASP SER SER LYS GLU LEU ASN TYR ASN LYS ASP GLU MET SEQRES 18 A 265 LYS LYS ILE LEU GLU ASP PHE LEU ASN THR ASN SER GLU SEQRES 19 A 265 ILE LYS ASN LEU ILE ASN GLU LYS VAL PHE LYS LEU SER SEQRES 20 A 265 VAL LYS ASP ILE VAL ASN LEU SER ASN GLU PHE TYR ARG SEQRES 21 A 265 PHE LEU GLN ASN ARG SEQRES 1 B 265 ALA ALA GLN CYS PHE LEU ILE ASP LYS ASN PHE VAL ASN SEQRES 2 B 265 LYS ALA VAL GLU SER ALA ASN LEU THR LYS ASP ASP VAL SEQRES 3 B 265 VAL LEU GLU ILE GLY LEU GLY LYS GLY ILE LEU THR GLU SEQRES 4 B 265 GLU LEU ALA LYS ASN ALA LYS LYS VAL TYR VAL ILE GLU SEQRES 5 B 265 ILE ASP LYS SER LEU GLU PRO TYR ALA ASN LYS LEU LYS SEQRES 6 B 265 GLU LEU TYR ASN ASN ILE GLU ILE ILE TRP GLY ASP ALA SEQRES 7 B 265 LEU LYS VAL ASP LEU ASN LYS LEU ASP PHE ASN LYS VAL SEQRES 8 B 265 VAL ALA ASN LEU PRO TYR GLN ILE SER SER PRO ILE THR SEQRES 9 B 265 PHE LYS LEU ILE LYS ARG GLY PHE ASP LEU ALA VAL LEU SEQRES 10 B 265 MET TYR GLN TYR GLU PHE ALA LYS ARG MET VAL ALA LYS SEQRES 11 B 265 GLU GLY THR LYS ASP TYR GLY ARG LEU SER VAL ALA VAL SEQRES 12 B 265 GLN SER ARG ALA ASP VAL GLU ILE VAL ALA LYS VAL PRO SEQRES 13 B 265 PRO SER ALA PHE TYR PRO LYS PRO LYS VAL TYR SER ALA SEQRES 14 B 265 ILE VAL LYS ILE LYS PRO ASN LYS GLY LYS TYR HIS ILE SEQRES 15 B 265 GLU ASN GLU ASN PHE PHE ASP ASP PHE LEU ARG ALA ILE SEQRES 16 B 265 PHE GLN HIS ARG ASN LYS SER VAL ARG LYS ALA LEU ILE SEQRES 17 B 265 ASP SER SER LYS GLU LEU ASN TYR ASN LYS ASP GLU MET SEQRES 18 B 265 LYS LYS ILE LEU GLU ASP PHE LEU ASN THR ASN SER GLU SEQRES 19 B 265 ILE LYS ASN LEU ILE ASN GLU LYS VAL PHE LYS LEU SER SEQRES 20 B 265 VAL LYS ASP ILE VAL ASN LEU SER ASN GLU PHE TYR ARG SEQRES 21 B 265 PHE LEU GLN ASN ARG HET PO4 A 1 5 HET PO4 A 2 5 HET PO4 A 3 5 HET PO4 A 273 5 HET PO4 B 4 5 HET PO4 B 5 5 HET PO4 B 6 5 HET PO4 B 7 5 HET PO4 B 273 10 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 9(O4 P 3-) FORMUL 12 HOH *285(H2 O) HELIX 1 1 ASP A 15 ALA A 26 1 12 HELIX 2 2 GLY A 42 ALA A 52 1 11 HELIX 3 3 ASP A 61 SER A 63 5 3 HELIX 4 4 LEU A 64 TYR A 75 1 12 HELIX 5 5 ASP A 89 LEU A 93 5 5 HELIX 6 6 PRO A 103 GLN A 105 5 3 HELIX 7 7 ILE A 106 GLY A 118 1 13 HELIX 8 8 TYR A 128 ALA A 136 1 9 HELIX 9 9 GLY A 144 SER A 152 1 9 HELIX 10 10 PRO A 163 SER A 165 5 3 HELIX 11 11 ASN A 191 GLN A 204 1 14 HELIX 12 12 SER A 209 SER A 217 1 9 HELIX 13 13 SER A 218 ASN A 222 5 5 HELIX 14 14 ASN A 224 LEU A 236 1 13 HELIX 15 15 SER A 240 LEU A 245 1 6 HELIX 16 16 ILE A 246 GLU A 248 5 3 HELIX 17 17 LYS A 249 LEU A 253 5 5 HELIX 18 18 SER A 254 ARG A 272 1 19 HELIX 19 19 ASP B 15 ALA B 26 1 12 HELIX 20 20 GLY B 42 ALA B 52 1 11 HELIX 21 21 ASP B 61 SER B 63 5 3 HELIX 22 22 LEU B 64 TYR B 75 1 12 HELIX 23 23 ILE B 106 GLY B 118 1 13 HELIX 24 24 TYR B 128 ALA B 136 1 9 HELIX 25 25 GLY B 144 SER B 152 1 9 HELIX 26 26 PRO B 163 SER B 165 5 3 HELIX 27 27 ASN B 191 PHE B 203 1 13 HELIX 28 28 GLN B 204 ARG B 206 5 3 HELIX 29 29 SER B 209 SER B 217 1 9 HELIX 30 30 SER B 218 ASN B 222 5 5 HELIX 31 31 ASN B 224 ASN B 239 1 16 HELIX 32 32 ILE B 242 ASN B 247 1 6 HELIX 33 33 LYS B 249 LEU B 253 5 5 HELIX 34 34 SER B 254 ASN B 271 1 18 SHEET 1 A 2 PHE A 12 LEU A 13 0 SHEET 2 A 2 PHE A 167 TYR A 168 -1 O TYR A 168 N PHE A 12 SHEET 1 B 7 ILE A 78 TRP A 82 0 SHEET 2 B 7 LYS A 54 GLU A 59 1 N VAL A 57 O ILE A 81 SHEET 3 B 7 VAL A 33 ILE A 37 1 N GLU A 36 O TYR A 56 SHEET 4 B 7 LYS A 97 ASN A 101 1 O LYS A 97 N LEU A 35 SHEET 5 B 7 LEU A 121 GLN A 127 1 O VAL A 123 N VAL A 98 SHEET 6 B 7 SER A 175 PRO A 182 -1 O ILE A 180 N ALA A 122 SHEET 7 B 7 ALA A 154 VAL A 162 -1 N VAL A 162 O SER A 175 SHEET 1 C 2 PHE B 12 LEU B 13 0 SHEET 2 C 2 PHE B 167 TYR B 168 -1 O TYR B 168 N PHE B 12 SHEET 1 D 7 ILE B 78 TRP B 82 0 SHEET 2 D 7 LYS B 54 GLU B 59 1 N VAL B 57 O ILE B 81 SHEET 3 D 7 VAL B 33 ILE B 37 1 N GLU B 36 O TYR B 56 SHEET 4 D 7 LYS B 97 ASN B 101 1 O LYS B 97 N LEU B 35 SHEET 5 D 7 LEU B 121 GLN B 127 1 O MET B 125 N ALA B 100 SHEET 6 D 7 SER B 175 PRO B 182 -1 O ILE B 180 N ALA B 122 SHEET 7 D 7 ALA B 154 VAL B 162 -1 N VAL B 159 O ILE B 177 CISPEP 1 TYR A 168 PRO A 169 0 -3.57 CISPEP 2 TYR B 168 PRO B 169 0 -7.68 SITE 1 AC1 3 TYR A 128 LYS A 161 HOH A 280 SITE 1 AC2 6 LYS A 181 ASN A 207 LYS A 249 PO4 A 273 SITE 2 AC2 6 HOH A 343 HOH A 422 SITE 1 AC3 3 LYS A 53 ARG A 145 HOH A 386 SITE 1 AC4 3 PO4 A 2 LYS A 181 LYS A 249 SITE 1 AC5 5 PO4 B 6 LYS B 181 ASN B 207 LYS B 249 SITE 2 AC5 5 HOH B 326 SITE 1 AC6 4 LYS B 53 ARG B 145 HOH B 308 HOH B 360 SITE 1 AC7 5 LYS A 62 PO4 B 4 LYS B 181 LYS B 249 SITE 2 AC7 5 HOH B 326 SITE 1 AC8 2 LYS B 41 TYR B 67 SITE 1 AC9 4 TYR B 128 LYS B 132 LYS B 161 HOH B 390 CRYST1 40.384 72.274 95.883 90.00 91.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024762 0.000000 0.000806 0.00000 SCALE2 0.000000 0.013836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010435 0.00000