PDB Short entry for 3G0H HEADER HYDROLASE/RNA 28-JAN-09 3G0H TITLE HUMAN DEAD-BOX RNA HELICASE DDX19, IN COMPLEX WITH AN ATP-ANALOGUE AND TITLE 2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX19B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 54-275; COMPND 5 SYNONYM: DEAD BOX PROTEIN 19B, DEAD BOX RNA HELICASE DEAD5; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3'; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DBP5, DDX19, DDX19B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEIN-RNA COMPLEX, DBP5, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ATP-BINDING, HELICASE, HYDROLASE, MEMBRANE, MRNA KEYWDS 3 TRANSPORT, NUCLEAR PORE COMPLEX, NUCLEOTIDE-BINDING, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, PROTEIN TRANSPORT, RNA-BINDING, TRANSLOCATION, KEYWDS 5 TRANSPORT, POLYURACIL, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,L.LEHTIO,R.COLLINS,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 A.JOHANSSON,I.JOHANSSON,T.KOTENYOVA,M.MOCHE,M.E.NILSSON,P.NORDLUND, AUTHOR 4 T.NYMAN,C.PERSSON,J.SAGEMARK,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL, AUTHOR 5 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, AUTHOR 6 H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3G0H 1 REMARK SEQADV REVDAT 3 13-JUL-11 3G0H 1 VERSN REVDAT 2 28-APR-09 3G0H 1 JRNL REMARK REVDAT 1 17-FEB-09 3G0H 0 JRNL AUTH R.COLLINS,T.KARLBERG,L.LEHTIO,P.SCHUTZ,S.VAN DEN BERG, JRNL AUTH 2 L.G.DAHLGREN,M.HAMMARSTROM,J.WEIGELT,H.SCHULER JRNL TITL THE DEXD/H-BOX RNA HELICASE DDX19 IS REGULATED BY AN JRNL TITL 2 {ALPHA}-HELICAL SWITCH. JRNL REF J.BIOL.CHEM. V. 284 10296 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19244245 JRNL DOI 10.1074/JBC.C900018200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 125 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.412 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3453 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2350 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4693 ; 1.129 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5761 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 6.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;36.560 ;24.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 619 ;17.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3670 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2036 ; 0.238 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 818 ; 0.036 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3295 ; 0.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 0.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1398 ; 1.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7679 -17.4388 -39.8642 REMARK 3 T TENSOR REMARK 3 T11: .6277 T22: .4910 REMARK 3 T33: .7228 T12: -.0975 REMARK 3 T13: -.1773 T23: .1235 REMARK 3 L TENSOR REMARK 3 L11: 1.6715 L22: .1950 REMARK 3 L33: 2.5877 L12: .4293 REMARK 3 L13: 2.0780 L23: .5415 REMARK 3 S TENSOR REMARK 3 S11: .3355 S12: -.4694 S13: -.1178 REMARK 3 S21: -.0607 S22: -.1252 S23: .1651 REMARK 3 S31: .4404 S32: -.5910 S33: -.2104 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5915 -6.5332 -10.8194 REMARK 3 T TENSOR REMARK 3 T11: .0096 T22: .0567 REMARK 3 T33: .0139 T12: .0091 REMARK 3 T13: -.0017 T23: .0095 REMARK 3 L TENSOR REMARK 3 L11: 1.3439 L22: 1.3688 REMARK 3 L33: 1.5377 L12: .1942 REMARK 3 L13: -.2177 L23: -.3995 REMARK 3 S TENSOR REMARK 3 S11: -.0443 S12: -.2060 S13: .0020 REMARK 3 S21: .0841 S22: -.0665 S23: -.0031 REMARK 3 S31: -.0608 S32: .0252 S33: .1108 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 469 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8145 -7.6288 -37.4954 REMARK 3 T TENSOR REMARK 3 T11: .0543 T22: .0408 REMARK 3 T33: .0247 T12: -.0137 REMARK 3 T13: .0220 T23: -.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.2336 L22: 2.8536 REMARK 3 L33: 1.8580 L12: -.3595 REMARK 3 L13: -.0888 L23: -.4714 REMARK 3 S TENSOR REMARK 3 S11: -.0710 S12: .1004 S13: -.0494 REMARK 3 S21: -.3060 S22: -.0359 S23: -.0272 REMARK 3 S31: .0821 S32: .0442 S33: .1069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR REMARK 200 OPTICS : MONOCHROMATOR CRYSTALS, SI(311) REMARK 200 CUT AND SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : 0.18900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEGMME 2000, 0.25M TRIMETHYLAMINE REMARK 280 N-OXIDE, 0.1 M TRIS, PH 8, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 52 REMARK 465 MET A 53 REMARK 465 GLU A 54 REMARK 465 ASP A 55 REMARK 465 ARG A 56 REMARK 465 ALA A 57 REMARK 465 ALA A 58 REMARK 465 GLN A 59 REMARK 465 THR A 468 REMARK 465 ASP A 469 REMARK 465 ASP A 470 REMARK 465 LEU A 471 REMARK 465 ASP A 472 REMARK 465 GLU A 473 REMARK 465 ILE A 474 REMARK 465 GLU A 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 60 OG REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 U E 7 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U E 7 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 7 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U E 1 P U E 1 OP3 -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 81 7.54 -67.64 REMARK 500 SER A 226 -109.20 -123.28 REMARK 500 ASP A 291 77.05 29.96 REMARK 500 ALA A 334 -110.77 -111.15 REMARK 500 THR A 390 -166.49 -105.53 REMARK 500 PHE A 433 64.78 34.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 476 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 1 O1G REMARK 620 2 ANP A 1 O2B 84.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 477 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EWS RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ADP DBREF 3G0H A 54 475 UNP Q9UMR2 DD19B_HUMAN 54 475 DBREF 3G0H E 1 7 PDB 3G0H 3G0H 1 7 SEQADV 3G0H SER A 52 UNP Q9UMR2 EXPRESSION TAG SEQADV 3G0H MET A 53 UNP Q9UMR2 EXPRESSION TAG SEQRES 1 A 424 SER MET GLU ASP ARG ALA ALA GLN SER LEU LEU ASN LYS SEQRES 2 A 424 LEU ILE ARG SER ASN LEU VAL ASP ASN THR ASN GLN VAL SEQRES 3 A 424 GLU VAL LEU GLN ARG ASP PRO ASN SER PRO LEU TYR SER SEQRES 4 A 424 VAL LYS SER PHE GLU GLU LEU ARG LEU LYS PRO GLN LEU SEQRES 5 A 424 LEU GLN GLY VAL TYR ALA MET GLY PHE ASN ARG PRO SER SEQRES 6 A 424 LYS ILE GLN GLU ASN ALA LEU PRO LEU MET LEU ALA GLU SEQRES 7 A 424 PRO PRO GLN ASN LEU ILE ALA GLN SER GLN SER GLY THR SEQRES 8 A 424 GLY LYS THR ALA ALA PHE VAL LEU ALA MET LEU SER GLN SEQRES 9 A 424 VAL GLU PRO ALA ASN LYS TYR PRO GLN CYS LEU CYS LEU SEQRES 10 A 424 SER PRO THR TYR GLU LEU ALA LEU GLN THR GLY LYS VAL SEQRES 11 A 424 ILE GLU GLN MET GLY LYS PHE TYR PRO GLU LEU LYS LEU SEQRES 12 A 424 ALA TYR ALA VAL ARG GLY ASN LYS LEU GLU ARG GLY GLN SEQRES 13 A 424 LYS ILE SER GLU GLN ILE VAL ILE GLY THR PRO GLY THR SEQRES 14 A 424 VAL LEU ASP TRP CYS SER LYS LEU LYS PHE ILE ASP PRO SEQRES 15 A 424 LYS LYS ILE LYS VAL PHE VAL LEU ASP GLU ALA ASP VAL SEQRES 16 A 424 MET ILE ALA THR GLN GLY HIS GLN ASP GLN SER ILE ARG SEQRES 17 A 424 ILE GLN ARG MET LEU PRO ARG ASN CYS GLN MET LEU LEU SEQRES 18 A 424 PHE SER ALA THR PHE GLU ASP SER VAL TRP LYS PHE ALA SEQRES 19 A 424 GLN LYS VAL VAL PRO ASP PRO ASN VAL ILE LYS LEU LYS SEQRES 20 A 424 ARG GLU GLU GLU THR LEU ASP THR ILE LYS GLN TYR TYR SEQRES 21 A 424 VAL LEU CYS SER SER ARG ASP GLU LYS PHE GLN ALA LEU SEQRES 22 A 424 CYS ASN LEU TYR GLY ALA ILE THR ILE ALA GLN ALA MET SEQRES 23 A 424 ILE PHE CYS HIS THR ARG LYS THR ALA SER TRP LEU ALA SEQRES 24 A 424 ALA GLU LEU SER LYS GLU GLY HIS GLN VAL ALA LEU LEU SEQRES 25 A 424 SER GLY GLU MET MET VAL GLU GLN ARG ALA ALA VAL ILE SEQRES 26 A 424 GLU ARG PHE ARG GLU GLY LYS GLU LYS VAL LEU VAL THR SEQRES 27 A 424 THR ASN VAL CYS ALA ARG GLY ILE ASP VAL GLU GLN VAL SEQRES 28 A 424 SER VAL VAL ILE ASN PHE ASP LEU PRO VAL ASP LYS ASP SEQRES 29 A 424 GLY ASN PRO ASP ASN GLU THR TYR LEU HIS ARG ILE GLY SEQRES 30 A 424 ARG THR GLY ARG PHE GLY LYS ARG GLY LEU ALA VAL ASN SEQRES 31 A 424 MET VAL ASP SER LYS HIS SER MET ASN ILE LEU ASN ARG SEQRES 32 A 424 ILE GLN GLU HIS PHE ASN LYS LYS ILE GLU ARG LEU ASP SEQRES 33 A 424 THR ASP ASP LEU ASP GLU ILE GLU SEQRES 1 E 7 U U U U U U U HET ANP A 1 31 HET MG A 476 1 HET GOL A 477 6 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 GOL C3 H8 O3 HELIX 1 1 LEU A 61 LEU A 65 5 5 HELIX 2 2 ILE A 66 VAL A 71 1 6 HELIX 3 3 ASN A 75 GLN A 81 1 7 HELIX 4 4 PHE A 94 ARG A 98 5 5 HELIX 5 5 LYS A 100 MET A 110 1 11 HELIX 6 6 SER A 116 ALA A 128 1 13 HELIX 7 7 GLY A 143 SER A 154 1 12 HELIX 8 8 THR A 171 GLY A 186 1 16 HELIX 9 9 THR A 217 CYS A 225 1 9 HELIX 10 10 ASP A 232 ILE A 236 5 5 HELIX 11 11 GLU A 243 ALA A 249 1 7 HELIX 12 12 HIS A 253 MET A 263 1 11 HELIX 13 13 GLU A 278 VAL A 289 1 12 HELIX 14 14 LYS A 298 THR A 303 5 6 HELIX 15 15 SER A 316 THR A 332 1 17 HELIX 16 16 THR A 342 GLU A 356 1 15 HELIX 17 17 MET A 368 GLU A 381 1 14 HELIX 18 18 ASN A 391 ALA A 394 5 4 HELIX 19 19 ASP A 419 GLY A 428 1 10 HELIX 20 20 SER A 445 PHE A 459 1 15 SHEET 1 A 7 LEU A 194 ALA A 197 0 SHEET 2 A 7 ILE A 213 GLY A 216 1 O ILE A 215 N ALA A 197 SHEET 3 A 7 CYS A 165 LEU A 168 1 N CYS A 165 O VAL A 214 SHEET 4 A 7 VAL A 238 ASP A 242 1 O VAL A 240 N LEU A 168 SHEET 5 A 7 GLN A 269 SER A 274 1 O LEU A 271 N LEU A 241 SHEET 6 A 7 ASN A 133 GLN A 137 1 N LEU A 134 O LEU A 272 SHEET 7 A 7 PRO A 292 ILE A 295 1 O ASN A 293 N ILE A 135 SHEET 1 B 7 ALA A 361 LEU A 363 0 SHEET 2 B 7 VAL A 386 THR A 389 1 O VAL A 388 N ALA A 361 SHEET 3 B 7 GLN A 335 PHE A 339 1 N ILE A 338 O THR A 389 SHEET 4 B 7 VAL A 402 ASN A 407 1 O ILE A 406 N MET A 337 SHEET 5 B 7 GLY A 437 VAL A 443 1 O LEU A 438 N VAL A 405 SHEET 6 B 7 ILE A 307 LEU A 313 1 N TYR A 310 O ALA A 439 SHEET 7 B 7 GLU A 464 ARG A 465 1 O GLU A 464 N GLN A 309 LINK O1G ANP A 1 MG MG A 476 1555 1555 1.94 LINK O2B ANP A 1 MG MG A 476 1555 1555 2.35 CISPEP 1 GLU A 129 PRO A 130 0 1.80 SITE 1 AC1 15 PHE A 112 ARG A 114 GLN A 119 GLY A 141 SITE 2 AC1 15 THR A 142 GLY A 143 LYS A 144 THR A 145 SITE 3 AC1 15 GLU A 243 GLY A 396 ASP A 398 ARG A 429 SITE 4 AC1 15 ARG A 432 PHE A 433 MG A 476 SITE 1 AC2 2 ANP A 1 THR A 145 SITE 1 AC3 6 PHE A 277 GLU A 278 GLU A 302 GLU A 421 SITE 2 AC3 6 HIS A 458 PHE A 459 CRYST1 41.570 81.080 124.740 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008017 0.00000