PDB Short entry for 3G0R HEADER HYDROLASE/DNA 28-JAN-09 3G0R TITLE COMPLEX OF MTH0212 AND AN 8BP DSDNA WITH DISTORTED ENDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTH0212; COMPND 5 EC: 3.1.11.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3'; COMPND 10 CHAIN: G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3'; COMPND 14 CHAIN: K; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 STRAIN: DELTA H (DSM 1053); SOURCE 5 GENE: MTH0212, MTH212, MTH_212; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET_B_001-MTH212 (D151N); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, DOUBLE-STRAND SPECIFIC 3'-5' EXONUCLEASE, AP KEYWDS 2 ENDONUCLEASE, 2'-DEOXYURIDINE ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.LAKOMEK,A.DICKMANNS,R.FICNER REVDAT 6 01-NOV-17 3G0R 1 REMARK REVDAT 5 12-FEB-14 3G0R 1 REMARK VERSN REVDAT 4 23-JUN-10 3G0R 1 JRNL REVDAT 3 19-MAY-10 3G0R 1 JRNL REVDAT 2 12-MAY-10 3G0R 1 JRNL REVDAT 1 09-MAR-10 3G0R 0 JRNL AUTH K.LAKOMEK,A.DICKMANNS,E.CIIRDAEVA,L.SCHOMACHER,R.FICNER JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF DNA URIDINE ENDONUCLEASE JRNL TITL 2 MTH212 BOUND TO DNA JRNL REF J.MOL.BIOL. V. 399 604 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20434457 JRNL DOI 10.1016/J.JMB.2010.04.044 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.GEORG,L.SCHOMACHER,J.P.J.CHONG,A.I.MAJERNIK,M.RAABE, REMARK 1 AUTH 2 H.URLAUB,S.MULLER,E.CIIRDAEVA,W.KRAMER,H.-J.FRITZ REMARK 1 TITL THE METHANOTHERMOBACTER THERMAUTOTROPHICUS EXOIII HOMOLOGUE REMARK 1 TITL 2 MTH212 IS A DNA URIDINE ENDONUCLEASE REMARK 1 REF NUCLEIC ACIDS RES. V. 34 5325 2006 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 17012282 REMARK 1 DOI 10.1093/NAR/GKL604 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 27293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4252 REMARK 3 NUCLEIC ACID ATOMS : 423 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.338 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4936 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6706 ; 1.586 ; 2.073 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 7.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;36.675 ;22.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;18.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3641 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2358 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3189 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2529 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4078 ; 1.328 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2592 ; 1.788 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2628 ; 2.840 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FZI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 189MM KCL, 9.5MM MGCL2, REMARK 280 4.7% (W/V) PEG 8000, 47MM MES/NAOH PH 5.6, 2.1% 1,4-BUTANEDIOL, REMARK 280 2MM DTT; PROTEIN SOLUTION: 234MM NACL, 7MM KHEPES PH 7.6, 1.83MM REMARK 280 MGCL2, 2.7MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE 2ND DC IN CHAIN K STANDS FOR THE MODIFIED NUCLEOTIDE 5- REMARK 400 BROMO-2'DC. SINCE THERE WAS NO HINT FOR A BROMO ATOM AT THE REMARK 400 APPROPRIATE POSITION IN THE ELECTRON DENSITY, THE DEPOSITOR REMARK 400 REFINED THE RESIDUE JUST AS DC. REMARK 400 REASONS FOR THE ABSENCE MIGHT EITHER BE AN INEFFICIENT REMARK 400 INCORPORATION OF THE MODIFIED NUCLEOTIDES DURING DNA REMARK 400 SYNTHESIS, A BREAK OF THE BOND BETWEEN THE APPROPRIATE C5 REMARK 400 RING OF RESIDUE 2 IN CHAIN G AND THE BROMO ATOM CAUSED BY REMARK 400 HEATING OR LIGHT DURING THE ANNEALING PROCEDURE OR REMARK 400 CRYSTALLIZATION. ANOTHER EXPLANATION FOR THE ABSENCE OF THE REMARK 400 BROMO LABEL MIGHT BE RADIATION DAMAGE DURING DATA COLLECTION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 DG G 11 REMARK 465 DC G 12 REMARK 465 DG G 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC K 3 O3' DC K 3 C3' -0.052 REMARK 500 DC K 11 O3' DC K 11 C3' -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG G 1 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG G 1 O4' - C1' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 DT G 3 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT G 3 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC G 5 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG G 10 C4 - C5 - N7 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG G 10 C5 - N7 - C8 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG G 10 N1 - C6 - O6 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC K 1 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC K 2 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC K 2 N1 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 DU K 6 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG K 7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA K 9 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 59.38 36.99 REMARK 500 PRO A 47 154.82 -45.18 REMARK 500 SER A 69 -144.96 57.63 REMARK 500 ASP A 103 -58.58 65.00 REMARK 500 MET A 117 -74.94 -58.51 REMARK 500 ILE A 159 -9.41 -58.99 REMARK 500 PHE A 173 21.81 -152.66 REMARK 500 ASP A 191 99.45 -67.42 REMARK 500 SER B 69 -136.14 56.46 REMARK 500 ASP B 103 -47.44 73.59 REMARK 500 PHE B 173 35.02 -160.03 REMARK 500 ASP B 191 88.78 -69.62 REMARK 500 ARG B 211 57.34 26.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA G 15 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 4 O6 REMARK 620 2 DC G 5 N4 92.4 REMARK 620 3 HOH G 25 O 80.5 70.6 REMARK 620 4 DU K 6 O4 160.6 80.7 113.6 REMARK 620 5 DG K 7 O6 70.9 74.6 133.4 89.7 REMARK 620 6 HOH K 18 O 99.3 152.3 136.0 80.0 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA G 14 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC G 5 N4 REMARK 620 2 DG G 6 O6 93.9 REMARK 620 3 HOH G 16 O 82.8 88.2 REMARK 620 4 DG K 5 O6 161.8 67.9 95.6 REMARK 620 5 DU K 6 O4 82.8 73.4 155.7 92.1 REMARK 620 6 HOH K 12 O 108.6 131.6 135.6 85.3 68.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA G 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA G 15 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FZI RELATED DB: PDB REMARK 900 1.9 ANGSTROM STRUCTURE OF THE THERMOPHILIC EXONUCLEASE III REMARK 900 HOMOLOGUE MTH0212 REMARK 900 RELATED ID: 3G00 RELATED DB: PDB REMARK 900 MTH0212 IN COMPLEX WITH A 9BP BLUNT END DSDNA AT 1.7 ANGSTROM REMARK 900 RELATED ID: 3G0A RELATED DB: PDB REMARK 900 MTH0212 WITH TWO BOUND MANGANESE IONS REMARK 900 RELATED ID: 3G2C RELATED DB: PDB REMARK 900 MTH0212 IN COMPLEX WITH A SHORT SSDNA (CGTA) REMARK 900 RELATED ID: 3G2D RELATED DB: PDB REMARK 900 COMPLEX OF MTH0212 AND A 4 BP DSDNA WITH 3'-OVERHANG REMARK 900 RELATED ID: 3G38 RELATED DB: PDB REMARK 900 THE CATALYTICALLY INACTIVE MUTANT MTH0212 (D151N) IN COMPLEX WITH REMARK 900 AN 8 BP DSDNA REMARK 900 RELATED ID: 3G3C RELATED DB: PDB REMARK 900 MTH0212 (WT) IN COMPLEX WITH A 6BP DSDNA CONTAINING A SINGLE ONE REMARK 900 NUCLEOTIDE LONG 3'-OVERHANG REMARK 900 RELATED ID: 3G1K RELATED DB: PDB REMARK 900 MTH0212 (WT) CRYSTALLIZED IN A MONOCLINIC SPACE GROUP REMARK 900 RELATED ID: 3G3Y RELATED DB: PDB REMARK 900 MTH0212 IN COMPLEX WITH SSDNA IN SPACE GROUP P32 REMARK 900 RELATED ID: 3G4T RELATED DB: PDB REMARK 900 MTH0212 (WT) IN COMPLEX WITH A 7BP DSDNA REMARK 900 RELATED ID: 3G8V RELATED DB: PDB REMARK 900 THE RATIONALLY DESIGNED CATALYTICALLY INACTIVE MUTANT MTH0212(D151N) REMARK 900 RELATED ID: 3G91 RELATED DB: PDB REMARK 900 1.2 ANGSTROM STRUCTURE OF THE EXONUCLEASE III HOMOLOGUE MTH0212 REMARK 900 RELATED ID: 3GA6 RELATED DB: PDB REMARK 900 MTH0212 IN COMPLEX WITH TWO DNA HELICES DBREF 3G0R A 1 257 UNP O26314 O26314_METTH 1 257 DBREF 3G0R B 1 257 UNP O26314 O26314_METTH 1 257 DBREF 3G0R G 1 13 PDB 3G0R 3G0R 1 13 DBREF 3G0R K 1 11 PDB 3G0R 3G0R 1 11 SEQADV 3G0R ALA A 2 UNP O26314 THR 2 ENGINEERED MUTATION SEQADV 3G0R ASN A 151 UNP O26314 ASP 151 ENGINEERED MUTATION SEQADV 3G0R LEU A 258 UNP O26314 EXPRESSION TAG SEQADV 3G0R GLU A 259 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 260 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 261 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 262 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 263 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 264 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS A 265 UNP O26314 EXPRESSION TAG SEQADV 3G0R ALA B 2 UNP O26314 THR 2 ENGINEERED MUTATION SEQADV 3G0R ASN B 151 UNP O26314 ASP 151 ENGINEERED MUTATION SEQADV 3G0R LEU B 258 UNP O26314 EXPRESSION TAG SEQADV 3G0R GLU B 259 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 260 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 261 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 262 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 263 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 264 UNP O26314 EXPRESSION TAG SEQADV 3G0R HIS B 265 UNP O26314 EXPRESSION TAG SEQRES 1 A 265 MET ALA VAL LEU LYS ILE ILE SER TRP ASN VAL ASN GLY SEQRES 2 A 265 LEU ARG ALA VAL HIS ARG LYS GLY PHE LEU LYS TRP PHE SEQRES 3 A 265 MET GLU GLU LYS PRO ASP ILE LEU CYS LEU GLN GLU ILE SEQRES 4 A 265 LYS ALA ALA PRO GLU GLN LEU PRO ARG LYS LEU ARG HIS SEQRES 5 A 265 VAL GLU GLY TYR ARG SER PHE PHE THR PRO ALA GLU ARG SEQRES 6 A 265 LYS GLY TYR SER GLY VAL ALA MET TYR THR LYS VAL PRO SEQRES 7 A 265 PRO SER SER LEU ARG GLU GLY PHE GLY VAL GLU ARG PHE SEQRES 8 A 265 ASP THR GLU GLY ARG ILE GLN ILE ALA ASP PHE ASP ASP SEQRES 9 A 265 PHE LEU LEU TYR ASN ILE TYR PHE PRO ASN GLY LYS MET SEQRES 10 A 265 SER GLU GLU ARG LEU LYS TYR LYS LEU GLU PHE TYR ASP SEQRES 11 A 265 ALA PHE LEU GLU ASP VAL ASN ARG GLU ARG ASP SER GLY SEQRES 12 A 265 ARG ASN VAL ILE ILE CYS GLY ASN PHE ASN THR ALA HIS SEQRES 13 A 265 ARG GLU ILE ASP LEU ALA ARG PRO LYS GLU ASN SER ASN SEQRES 14 A 265 VAL SER GLY PHE LEU PRO VAL GLU ARG ALA TRP ILE ASP SEQRES 15 A 265 LYS PHE ILE GLU ASN GLY TYR VAL ASP THR PHE ARG MET SEQRES 16 A 265 PHE ASN SER ASP PRO GLY GLN TYR THR TRP TRP SER TYR SEQRES 17 A 265 ARG THR ARG ALA ARG GLU ARG ASN VAL GLY TRP ARG LEU SEQRES 18 A 265 ASP TYR PHE PHE VAL ASN GLU GLU PHE LYS GLY LYS VAL SEQRES 19 A 265 LYS ARG SER TRP ILE LEU SER ASP VAL MET GLY SER ASP SEQRES 20 A 265 HIS CYS PRO ILE GLY LEU GLU ILE GLU LEU LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET ALA VAL LEU LYS ILE ILE SER TRP ASN VAL ASN GLY SEQRES 2 B 265 LEU ARG ALA VAL HIS ARG LYS GLY PHE LEU LYS TRP PHE SEQRES 3 B 265 MET GLU GLU LYS PRO ASP ILE LEU CYS LEU GLN GLU ILE SEQRES 4 B 265 LYS ALA ALA PRO GLU GLN LEU PRO ARG LYS LEU ARG HIS SEQRES 5 B 265 VAL GLU GLY TYR ARG SER PHE PHE THR PRO ALA GLU ARG SEQRES 6 B 265 LYS GLY TYR SER GLY VAL ALA MET TYR THR LYS VAL PRO SEQRES 7 B 265 PRO SER SER LEU ARG GLU GLY PHE GLY VAL GLU ARG PHE SEQRES 8 B 265 ASP THR GLU GLY ARG ILE GLN ILE ALA ASP PHE ASP ASP SEQRES 9 B 265 PHE LEU LEU TYR ASN ILE TYR PHE PRO ASN GLY LYS MET SEQRES 10 B 265 SER GLU GLU ARG LEU LYS TYR LYS LEU GLU PHE TYR ASP SEQRES 11 B 265 ALA PHE LEU GLU ASP VAL ASN ARG GLU ARG ASP SER GLY SEQRES 12 B 265 ARG ASN VAL ILE ILE CYS GLY ASN PHE ASN THR ALA HIS SEQRES 13 B 265 ARG GLU ILE ASP LEU ALA ARG PRO LYS GLU ASN SER ASN SEQRES 14 B 265 VAL SER GLY PHE LEU PRO VAL GLU ARG ALA TRP ILE ASP SEQRES 15 B 265 LYS PHE ILE GLU ASN GLY TYR VAL ASP THR PHE ARG MET SEQRES 16 B 265 PHE ASN SER ASP PRO GLY GLN TYR THR TRP TRP SER TYR SEQRES 17 B 265 ARG THR ARG ALA ARG GLU ARG ASN VAL GLY TRP ARG LEU SEQRES 18 B 265 ASP TYR PHE PHE VAL ASN GLU GLU PHE LYS GLY LYS VAL SEQRES 19 B 265 LYS ARG SER TRP ILE LEU SER ASP VAL MET GLY SER ASP SEQRES 20 B 265 HIS CYS PRO ILE GLY LEU GLU ILE GLU LEU LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS SEQRES 1 G 13 DG DC DT DG DC DG DC DA DG DG DG DC DG SEQRES 1 K 11 DC DC DC DT DG DU DG DC DA DG DC HET GOL A 266 6 HET GOL A 267 6 HET GOL A 268 6 HET GOL A 269 6 HET GOL A 270 6 HET GOL A 271 6 HET GOL A 272 6 HET GOL A 273 6 HET GOL A 274 6 HET PG4 A 275 13 HET PG4 A 276 13 HET PG4 A 277 13 HET GOL B 266 6 HET GOL B 267 6 HET GOL B 268 6 HET NA G 14 1 HET NA G 15 1 HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 12(C3 H8 O3) FORMUL 14 PG4 3(C8 H18 O5) FORMUL 20 NA 2(NA 1+) FORMUL 22 HOH *305(H2 O) HELIX 1 1 GLY A 13 LYS A 20 1 8 HELIX 2 2 GLY A 21 LYS A 30 1 10 HELIX 3 3 ALA A 42 LEU A 46 5 5 HELIX 4 4 PRO A 47 HIS A 52 1 6 HELIX 5 5 VAL A 88 THR A 93 1 6 HELIX 6 6 SER A 118 SER A 142 1 25 HELIX 7 7 ARG A 157 LEU A 161 5 5 HELIX 8 8 PRO A 164 SER A 168 5 5 HELIX 9 9 LEU A 174 ASN A 187 1 14 HELIX 10 10 PHE A 193 PHE A 196 5 4 HELIX 11 11 TYR A 208 ASN A 216 5 9 HELIX 12 12 GLU A 229 GLY A 232 5 4 HELIX 13 13 GLY B 13 LYS B 20 1 8 HELIX 14 14 GLY B 21 LYS B 30 1 10 HELIX 15 15 ALA B 42 LEU B 46 5 5 HELIX 16 16 PRO B 47 HIS B 52 1 6 HELIX 17 17 VAL B 88 THR B 93 1 6 HELIX 18 18 SER B 118 SER B 142 1 25 HELIX 19 19 ARG B 157 LEU B 161 5 5 HELIX 20 20 LEU B 174 GLU B 186 1 13 HELIX 21 21 THR B 192 ASN B 197 1 6 HELIX 22 22 TYR B 208 ALA B 212 5 5 HELIX 23 23 GLU B 229 GLY B 232 5 4 SHEET 1 A 6 ARG A 57 THR A 61 0 SHEET 2 A 6 VAL A 71 THR A 75 -1 O THR A 75 N ARG A 57 SHEET 3 A 6 ILE A 33 GLN A 37 -1 N LEU A 36 O ALA A 72 SHEET 4 A 6 LEU A 4 ASN A 10 1 N ILE A 7 O CYS A 35 SHEET 5 A 6 ILE A 251 ILE A 255 -1 O ILE A 251 N SER A 8 SHEET 6 A 6 VAL A 234 ILE A 239 -1 N TRP A 238 O GLY A 252 SHEET 1 B 6 SER A 81 ARG A 83 0 SHEET 2 B 6 ILE A 97 ASP A 101 -1 O ILE A 99 N ARG A 83 SHEET 3 B 6 LEU A 106 TYR A 111 -1 O LEU A 107 N ALA A 100 SHEET 4 B 6 VAL A 146 ASN A 151 1 O ILE A 147 N TYR A 108 SHEET 5 B 6 ASP A 222 ASN A 227 -1 O PHE A 225 N ILE A 148 SHEET 6 B 6 TYR A 189 ASP A 191 -1 N VAL A 190 O VAL A 226 SHEET 1 C 6 ARG B 57 THR B 61 0 SHEET 2 C 6 VAL B 71 THR B 75 -1 O VAL B 71 N THR B 61 SHEET 3 C 6 ILE B 33 GLN B 37 -1 N LEU B 36 O ALA B 72 SHEET 4 C 6 LEU B 4 ASN B 10 1 N ILE B 7 O CYS B 35 SHEET 5 C 6 ILE B 251 ILE B 255 -1 O LEU B 253 N ILE B 6 SHEET 6 C 6 VAL B 234 ILE B 239 -1 N LYS B 235 O GLU B 254 SHEET 1 D 6 LEU B 82 ARG B 83 0 SHEET 2 D 6 ILE B 97 ASP B 101 -1 O ILE B 99 N ARG B 83 SHEET 3 D 6 LEU B 106 TYR B 111 -1 O ASN B 109 N GLN B 98 SHEET 4 D 6 VAL B 146 ASN B 151 1 O ILE B 147 N TYR B 108 SHEET 5 D 6 ASP B 222 ASN B 227 -1 O PHE B 225 N ILE B 148 SHEET 6 D 6 TYR B 189 ASP B 191 -1 N VAL B 190 O VAL B 226 LINK O6 DG G 4 NA NA G 15 1555 1555 2.85 LINK N4 DC G 5 NA NA G 15 1555 1555 2.88 LINK N4 DC G 5 NA NA G 14 1555 1555 2.97 LINK O6 DG G 6 NA NA G 14 1555 1555 2.57 LINK O HOH G 16 NA NA G 14 1555 1555 3.03 LINK O HOH G 25 NA NA G 15 1555 1555 3.29 LINK O6 DG K 5 NA NA G 14 1555 1555 2.89 LINK O4 DU K 6 NA NA G 14 1555 1555 2.85 LINK O4 DU K 6 NA NA G 15 1555 1555 3.05 LINK O6 DG K 7 NA NA G 15 1555 1555 2.67 LINK O HOH K 12 NA NA G 14 1555 1555 3.40 LINK O HOH K 18 NA NA G 15 1555 1555 3.18 SITE 1 AC1 3 ASP A 130 TRP A 180 HOH A 313 SITE 1 AC2 8 LEU A 4 ASP A 32 ILE A 33 THR A 75 SITE 2 AC2 8 LYS A 76 VAL A 77 PHE A 102 HOH A 309 SITE 1 AC3 10 ASP A 191 THR A 192 PHE A 193 ARG A 220 SITE 2 AC3 10 ASP A 222 TYR A 223 PHE A 224 TRP A 238 SITE 3 AC3 10 ILE A 251 HOH A 326 SITE 1 AC4 11 THR A 61 PRO A 62 GLU A 84 PHE A 91 SITE 2 AC4 11 ASP A 92 THR A 93 GLU A 94 GLY A 95 SITE 3 AC4 11 ARG A 96 ILE A 97 PG4 A 275 SITE 1 AC5 8 ILE A 185 VAL A 190 ASP A 191 ARG A 194 SITE 2 AC5 8 MET A 195 HOH A 282 HOH A 303 HOH A 415 SITE 1 AC6 8 LYS A 20 TYR A 208 GLY A 245 SER A 246 SITE 2 AC6 8 HOH A 387 HOH A 423 DT K 4 DG K 5 SITE 1 AC7 5 HIS A 156 ARG A 157 ARG A 178 ASP A 182 SITE 2 AC7 5 HOH A 407 SITE 1 AC8 6 GLU A 29 TRP A 238 LEU A 240 HOH A 302 SITE 2 AC8 6 HOH A 353 HOH A 418 SITE 1 AC9 4 ASN A 137 ARG A 140 ASP A 141 ASN A 187 SITE 1 BC1 8 ALA A 42 GLU A 44 GLN A 45 PRO A 62 SITE 2 BC1 8 ALA A 63 GLU A 64 GOL A 269 HOH A 322 SITE 1 BC2 7 ARG A 51 HIS A 52 GLY A 55 TYR A 56 SITE 2 BC2 7 ARG A 57 SER A 58 HOH A 404 SITE 1 BC3 6 TRP A 9 VAL A 17 LYS A 20 TRP A 25 SITE 2 BC3 6 ASP A 242 MET A 244 SITE 1 BC4 10 PHE B 193 ARG B 220 ASP B 222 PHE B 224 SITE 2 BC4 10 SER B 237 TRP B 238 ILE B 239 ILE B 251 SITE 3 BC4 10 GLY B 252 HOH B 300 SITE 1 BC5 3 ASP B 130 TRP B 180 HOH B 344 SITE 1 BC6 3 GLY B 55 ARG B 57 LYS B 76 SITE 1 BC7 5 DC G 5 DG G 6 HOH G 16 DG K 5 SITE 2 BC7 5 DU K 6 SITE 1 BC8 4 DG G 4 DC G 5 DU K 6 DG K 7 CRYST1 44.751 80.760 105.211 90.00 94.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022346 0.000000 0.001574 0.00000 SCALE2 0.000000 0.012382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009528 0.00000