PDB Short entry for 3G3A HEADER HYDROLASE/IMMUNE SYSTEM 02-FEB-09 3G3A TITLE STRUCTURE OF A LAMPREY VARIABLE LYMPHOCYTE RECEPTOR IN COMPLEX WITH A TITLE 2 PROTEIN ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIABLE LYMPHOCYTE RECEPTOR VLRB.2D; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYSOZYME C; COMPND 8 CHAIN: B, D, F, H; COMPND 9 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 10 EC: 3.2.1.17; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROMYZON MARINUS; SOURCE 3 ORGANISM_COMMON: SEA LAMPREY; SOURCE 4 ORGANISM_TAXID: 7757; SOURCE 5 GENE: VLR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7.7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 14 ORGANISM_TAXID: 9031; SOURCE 15 STRAIN: CHICKEN; SOURCE 16 GENE: LYSOZYME, LYZ; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VLR, ANTIBODY, ALLERGEN, ANTIMICROBIAL, BACTERIOLYTIC ENZYME, KEYWDS 2 GLYCOSIDASE, HYDROLASE, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.DENG,C.A.VELIKOVSKY,R.A.MARIUZZA REVDAT 3 06-SEP-23 3G3A 1 REMARK REVDAT 2 19-JAN-10 3G3A 1 JRNL REVDAT 1 23-JUN-09 3G3A 0 JRNL AUTH C.A.VELIKOVSKY,L.DENG,S.TASUMI,L.M.IYER,M.C.KERZIC, JRNL AUTH 2 L.ARAVIND,Z.PANCER,R.A.MARIUZZA JRNL TITL STRUCTURE OF A LAMPREY VARIABLE LYMPHOCYTE RECEPTOR IN JRNL TITL 2 COMPLEX WITH A PROTEIN ANTIGEN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 725 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19543291 JRNL DOI 10.1038/NSMB.1619 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 84142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4460 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 323 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8959 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.931 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9166 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12490 ; 1.755 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1155 ; 6.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 398 ;39.045 ;24.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1475 ;17.083 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;24.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1412 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6920 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4344 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6140 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 656 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5933 ; 0.939 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9333 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3749 ; 2.547 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3157 ; 3.814 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3G39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE AND 0.1 M REMARK 280 SODIUM CITRATE, PH 5.6, EVAPORATION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.82550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 ARG A -6 REMARK 465 ILE A -5 REMARK 465 ARG A -4 REMARK 465 ALA A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 PRO A 168 REMARK 465 GLY A 169 REMARK 465 ASN B 103 REMARK 465 ARG B 128 REMARK 465 LEU B 129 REMARK 465 MET C -8 REMARK 465 ALA C -7 REMARK 465 ARG C -6 REMARK 465 ILE C -5 REMARK 465 ARG C -4 REMARK 465 ALA C -3 REMARK 465 ARG C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 PRO C 168 REMARK 465 GLY C 169 REMARK 465 ASN D 103 REMARK 465 ARG D 128 REMARK 465 LEU D 129 REMARK 465 MET E -8 REMARK 465 ALA E -7 REMARK 465 ARG E -6 REMARK 465 ILE E -5 REMARK 465 ARG E -4 REMARK 465 ALA E -3 REMARK 465 ARG E -2 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 PRO E 168 REMARK 465 GLY E 169 REMARK 465 ASN F 103 REMARK 465 ARG F 128 REMARK 465 LEU F 129 REMARK 465 MET G -8 REMARK 465 ALA G -7 REMARK 465 ARG G -6 REMARK 465 ILE G -5 REMARK 465 ARG G -4 REMARK 465 ALA G -3 REMARK 465 ARG G -2 REMARK 465 GLY G -1 REMARK 465 SER G 0 REMARK 465 SER G 4 REMARK 465 GLN G 5 REMARK 465 PRO G 168 REMARK 465 GLY G 169 REMARK 465 ASP H 101 REMARK 465 GLY H 102 REMARK 465 ASN H 103 REMARK 465 ARG H 128 REMARK 465 LEU H 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER F 100 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 122.97 -171.71 REMARK 500 ASN A 39 -159.74 -132.69 REMARK 500 LEU A 52 53.25 -99.49 REMARK 500 ASN A 63 -157.34 -127.79 REMARK 500 ASN A 87 -164.74 -128.46 REMARK 500 LEU A 138 -107.68 -125.78 REMARK 500 ASN A 139 -163.49 -103.44 REMARK 500 ASP A 141 90.08 -160.23 REMARK 500 ASP B 119 71.77 -69.52 REMARK 500 SER C 9 -68.99 -125.46 REMARK 500 ASN C 39 -162.88 -125.22 REMARK 500 ASN C 63 -148.33 -114.38 REMARK 500 GLN C 64 30.83 -141.04 REMARK 500 ASN C 87 -164.48 -119.89 REMARK 500 LEU C 109 176.21 -59.97 REMARK 500 LEU C 138 -65.22 -129.60 REMARK 500 ASP C 141 92.94 -168.99 REMARK 500 ALA C 160 -14.27 -45.73 REMARK 500 GLN D 57 61.58 36.94 REMARK 500 SER E 9 117.75 -162.54 REMARK 500 SER E 19 14.70 59.23 REMARK 500 THR E 31 120.92 -39.21 REMARK 500 LEU E 36 12.59 -141.15 REMARK 500 ASN E 39 -158.30 -123.47 REMARK 500 PRO E 46 -28.26 -39.07 REMARK 500 LEU E 52 45.18 -91.37 REMARK 500 ASN E 63 -154.53 -115.65 REMARK 500 ALA E 70 -39.08 -37.31 REMARK 500 LEU E 76 60.76 -102.60 REMARK 500 ASN E 87 -157.04 -131.04 REMARK 500 ASP E 141 92.30 -164.14 REMARK 500 ASN F 19 42.53 37.32 REMARK 500 ARG F 68 17.19 -144.01 REMARK 500 SER G 9 110.72 -160.80 REMARK 500 ASN G 39 -162.64 -120.79 REMARK 500 ASN G 63 -158.62 -115.12 REMARK 500 ASN G 87 -157.19 -117.06 REMARK 500 LEU G 138 -103.75 -123.73 REMARK 500 ASN G 139 -155.47 -105.53 REMARK 500 ASP G 141 94.67 -168.57 REMARK 500 ARG H 68 19.48 -145.01 REMARK 500 ASN H 106 -18.94 -48.66 REMARK 500 THR H 118 -179.02 -62.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G39 RELATED DB: PDB REMARK 900 RELATED ID: 3G3B RELATED DB: PDB DBREF 3G3A B 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 3G3A D 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 3G3A F 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 3G3A H 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 3G3A A -8 169 PDB 3G3A 3G3A -8 169 DBREF 3G3A C -8 169 PDB 3G3A 3G3A -8 169 DBREF 3G3A E -8 169 PDB 3G3A 3G3A -8 169 DBREF 3G3A G -8 169 PDB 3G3A 3G3A -8 169 SEQRES 1 A 178 MET ALA ARG ILE ARG ALA ARG GLY SER ALA CYS PRO SER SEQRES 2 A 178 GLN CYS SER CYS SER GLY THR THR VAL ASP CYS SER GLY SEQRES 3 A 178 LYS SER LEU ALA SER VAL PRO THR GLY ILE PRO THR THR SEQRES 4 A 178 THR GLN VAL LEU TYR LEU TYR ASP ASN GLN ILE THR LYS SEQRES 5 A 178 LEU GLU PRO GLY VAL PHE ASP ARG LEU THR GLN LEU THR SEQRES 6 A 178 ARG LEU ASP LEU ASP ASN ASN GLN LEU THR VAL LEU PRO SEQRES 7 A 178 ALA GLY VAL PHE ASP LYS LEU THR GLN LEU THR GLN LEU SEQRES 8 A 178 SER LEU ASN ASP ASN GLN LEU LYS SER ILE PRO ARG GLY SEQRES 9 A 178 ALA PHE ASP ASN LEU LYS SER LEU THR HIS ILE TRP LEU SEQRES 10 A 178 LEU ASN ASN PRO TRP ASP CYS ALA CYS SER ASP ILE LEU SEQRES 11 A 178 TYR LEU SER ARG TRP ILE SER GLN HIS PRO GLY LEU VAL SEQRES 12 A 178 PHE GLY TYR LEU ASN LEU ASP PRO ASP SER ALA ARG CYS SEQRES 13 A 178 SER GLY THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SEQRES 14 A 178 SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 B 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 C 178 MET ALA ARG ILE ARG ALA ARG GLY SER ALA CYS PRO SER SEQRES 2 C 178 GLN CYS SER CYS SER GLY THR THR VAL ASP CYS SER GLY SEQRES 3 C 178 LYS SER LEU ALA SER VAL PRO THR GLY ILE PRO THR THR SEQRES 4 C 178 THR GLN VAL LEU TYR LEU TYR ASP ASN GLN ILE THR LYS SEQRES 5 C 178 LEU GLU PRO GLY VAL PHE ASP ARG LEU THR GLN LEU THR SEQRES 6 C 178 ARG LEU ASP LEU ASP ASN ASN GLN LEU THR VAL LEU PRO SEQRES 7 C 178 ALA GLY VAL PHE ASP LYS LEU THR GLN LEU THR GLN LEU SEQRES 8 C 178 SER LEU ASN ASP ASN GLN LEU LYS SER ILE PRO ARG GLY SEQRES 9 C 178 ALA PHE ASP ASN LEU LYS SER LEU THR HIS ILE TRP LEU SEQRES 10 C 178 LEU ASN ASN PRO TRP ASP CYS ALA CYS SER ASP ILE LEU SEQRES 11 C 178 TYR LEU SER ARG TRP ILE SER GLN HIS PRO GLY LEU VAL SEQRES 12 C 178 PHE GLY TYR LEU ASN LEU ASP PRO ASP SER ALA ARG CYS SEQRES 13 C 178 SER GLY THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SEQRES 14 C 178 SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 D 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 D 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 D 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 D 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 D 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 D 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 D 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 D 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 D 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 D 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 E 178 MET ALA ARG ILE ARG ALA ARG GLY SER ALA CYS PRO SER SEQRES 2 E 178 GLN CYS SER CYS SER GLY THR THR VAL ASP CYS SER GLY SEQRES 3 E 178 LYS SER LEU ALA SER VAL PRO THR GLY ILE PRO THR THR SEQRES 4 E 178 THR GLN VAL LEU TYR LEU TYR ASP ASN GLN ILE THR LYS SEQRES 5 E 178 LEU GLU PRO GLY VAL PHE ASP ARG LEU THR GLN LEU THR SEQRES 6 E 178 ARG LEU ASP LEU ASP ASN ASN GLN LEU THR VAL LEU PRO SEQRES 7 E 178 ALA GLY VAL PHE ASP LYS LEU THR GLN LEU THR GLN LEU SEQRES 8 E 178 SER LEU ASN ASP ASN GLN LEU LYS SER ILE PRO ARG GLY SEQRES 9 E 178 ALA PHE ASP ASN LEU LYS SER LEU THR HIS ILE TRP LEU SEQRES 10 E 178 LEU ASN ASN PRO TRP ASP CYS ALA CYS SER ASP ILE LEU SEQRES 11 E 178 TYR LEU SER ARG TRP ILE SER GLN HIS PRO GLY LEU VAL SEQRES 12 E 178 PHE GLY TYR LEU ASN LEU ASP PRO ASP SER ALA ARG CYS SEQRES 13 E 178 SER GLY THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SEQRES 14 E 178 SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 F 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 F 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 F 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 F 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 F 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 F 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 F 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 F 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 F 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 F 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 G 178 MET ALA ARG ILE ARG ALA ARG GLY SER ALA CYS PRO SER SEQRES 2 G 178 GLN CYS SER CYS SER GLY THR THR VAL ASP CYS SER GLY SEQRES 3 G 178 LYS SER LEU ALA SER VAL PRO THR GLY ILE PRO THR THR SEQRES 4 G 178 THR GLN VAL LEU TYR LEU TYR ASP ASN GLN ILE THR LYS SEQRES 5 G 178 LEU GLU PRO GLY VAL PHE ASP ARG LEU THR GLN LEU THR SEQRES 6 G 178 ARG LEU ASP LEU ASP ASN ASN GLN LEU THR VAL LEU PRO SEQRES 7 G 178 ALA GLY VAL PHE ASP LYS LEU THR GLN LEU THR GLN LEU SEQRES 8 G 178 SER LEU ASN ASP ASN GLN LEU LYS SER ILE PRO ARG GLY SEQRES 9 G 178 ALA PHE ASP ASN LEU LYS SER LEU THR HIS ILE TRP LEU SEQRES 10 G 178 LEU ASN ASN PRO TRP ASP CYS ALA CYS SER ASP ILE LEU SEQRES 11 G 178 TYR LEU SER ARG TRP ILE SER GLN HIS PRO GLY LEU VAL SEQRES 12 G 178 PHE GLY TYR LEU ASN LEU ASP PRO ASP SER ALA ARG CYS SEQRES 13 G 178 SER GLY THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SEQRES 14 G 178 SER THR SER PRO SER LYS CYS PRO GLY SEQRES 1 H 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 H 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 H 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 H 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 H 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 H 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 H 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 H 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 H 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 H 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 9 HOH *578(H2 O) HELIX 1 1 CYS A 117 ASP A 119 5 3 HELIX 2 2 ILE A 120 HIS A 130 1 11 HELIX 3 3 PRO A 153 VAL A 157 5 5 HELIX 4 4 THR A 158 THR A 162 5 5 HELIX 5 5 SER A 163 CYS A 167 5 5 HELIX 6 6 GLY B 4 HIS B 15 1 12 HELIX 7 7 ASN B 19 TYR B 23 5 5 HELIX 8 8 SER B 24 ASN B 37 1 14 HELIX 9 9 SER B 81 SER B 85 5 5 HELIX 10 10 ILE B 88 GLY B 102 1 15 HELIX 11 11 GLY B 104 ALA B 107 5 4 HELIX 12 12 TRP B 108 CYS B 115 1 8 HELIX 13 13 ASP B 119 ARG B 125 5 7 HELIX 14 14 CYS C 117 ASP C 119 5 3 HELIX 15 15 ILE C 120 HIS C 130 1 11 HELIX 16 16 ASP C 141 ALA C 145 5 5 HELIX 17 17 PRO C 153 VAL C 157 5 5 HELIX 18 18 THR C 158 THR C 162 5 5 HELIX 19 19 SER C 163 CYS C 167 5 5 HELIX 20 20 GLY D 4 HIS D 15 1 12 HELIX 21 21 ASN D 19 TYR D 23 5 5 HELIX 22 22 SER D 24 ASN D 37 1 14 HELIX 23 23 PRO D 79 SER D 85 5 7 HELIX 24 24 ILE D 88 GLY D 102 1 15 HELIX 25 25 GLY D 104 ALA D 107 5 4 HELIX 26 26 TRP D 108 CYS D 115 1 8 HELIX 27 27 ASP D 119 ARG D 125 5 7 HELIX 28 28 CYS E 117 ASP E 119 5 3 HELIX 29 29 ILE E 120 HIS E 130 1 11 HELIX 30 30 PRO E 153 VAL E 157 5 5 HELIX 31 31 SER E 163 CYS E 167 5 5 HELIX 32 32 GLY F 4 HIS F 15 1 12 HELIX 33 33 ASN F 19 TYR F 23 5 5 HELIX 34 34 SER F 24 ASN F 37 1 14 HELIX 35 35 PRO F 79 SER F 85 5 7 HELIX 36 36 ILE F 88 GLY F 102 1 15 HELIX 37 37 GLY F 104 ALA F 107 5 4 HELIX 38 38 TRP F 108 CYS F 115 1 8 HELIX 39 39 ASP F 119 ILE F 124 5 6 HELIX 40 40 CYS G 117 ASP G 119 5 3 HELIX 41 41 ILE G 120 HIS G 130 1 11 HELIX 42 42 PRO G 153 VAL G 157 5 5 HELIX 43 43 THR G 158 THR G 162 5 5 HELIX 44 44 SER G 163 CYS G 167 5 5 HELIX 45 45 GLY H 4 HIS H 15 1 12 HELIX 46 46 ASN H 19 TYR H 23 5 5 HELIX 47 47 SER H 24 ASN H 37 1 14 HELIX 48 48 PRO H 79 SER H 85 5 7 HELIX 49 49 ILE H 88 SER H 100 1 13 HELIX 50 50 GLY H 104 ALA H 107 5 4 HELIX 51 51 TRP H 108 CYS H 115 1 8 HELIX 52 52 ASP H 119 ARG H 125 5 7 SHEET 1 A 7 SER A 7 SER A 9 0 SHEET 2 A 7 THR A 12 ASP A 14 -1 O ASP A 14 N SER A 7 SHEET 3 A 7 VAL A 33 TYR A 35 1 O VAL A 33 N VAL A 13 SHEET 4 A 7 ARG A 57 ASP A 59 1 O ASP A 59 N LEU A 34 SHEET 5 A 7 GLN A 81 SER A 83 1 O SER A 83 N LEU A 58 SHEET 6 A 7 HIS A 105 TRP A 107 1 O HIS A 105 N LEU A 82 SHEET 7 A 7 VAL A 134 PHE A 135 1 O PHE A 135 N ILE A 106 SHEET 1 B 3 THR B 43 ARG B 45 0 SHEET 2 B 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 B 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SHEET 1 C 7 SER C 7 CYS C 8 0 SHEET 2 C 7 THR C 12 ASP C 14 -1 O ASP C 14 N SER C 7 SHEET 3 C 7 VAL C 33 TYR C 35 1 O TYR C 35 N VAL C 13 SHEET 4 C 7 ARG C 57 ASP C 59 1 O ARG C 57 N LEU C 34 SHEET 5 C 7 GLN C 81 SER C 83 1 O SER C 83 N LEU C 58 SHEET 6 C 7 HIS C 105 TRP C 107 1 O HIS C 105 N LEU C 82 SHEET 7 C 7 VAL C 134 PHE C 135 1 O PHE C 135 N ILE C 106 SHEET 1 D 3 THR D 43 ARG D 45 0 SHEET 2 D 3 THR D 51 TYR D 53 -1 O ASP D 52 N ASN D 44 SHEET 3 D 3 ILE D 58 ASN D 59 -1 O ILE D 58 N TYR D 53 SHEET 1 E 7 SER E 7 SER E 9 0 SHEET 2 E 7 THR E 12 ASP E 14 -1 O ASP E 14 N SER E 7 SHEET 3 E 7 VAL E 33 TYR E 35 1 O VAL E 33 N VAL E 13 SHEET 4 E 7 ARG E 57 ASP E 59 1 O ARG E 57 N LEU E 34 SHEET 5 E 7 GLN E 81 SER E 83 1 O SER E 83 N LEU E 58 SHEET 6 E 7 HIS E 105 TRP E 107 1 O HIS E 105 N LEU E 82 SHEET 7 E 7 VAL E 134 PHE E 135 1 O PHE E 135 N ILE E 106 SHEET 1 F 3 THR F 43 ARG F 45 0 SHEET 2 F 3 THR F 51 TYR F 53 -1 O ASP F 52 N ASN F 44 SHEET 3 F 3 ILE F 58 ASN F 59 -1 O ILE F 58 N TYR F 53 SHEET 1 G 7 SER G 7 SER G 9 0 SHEET 2 G 7 THR G 12 ASP G 14 -1 O ASP G 14 N SER G 7 SHEET 3 G 7 VAL G 33 TYR G 35 1 O VAL G 33 N VAL G 13 SHEET 4 G 7 ARG G 57 ASP G 59 1 O ASP G 59 N LEU G 34 SHEET 5 G 7 GLN G 81 SER G 83 1 O GLN G 81 N LEU G 58 SHEET 6 G 7 HIS G 105 TRP G 107 1 O HIS G 105 N LEU G 82 SHEET 7 G 7 VAL G 134 PHE G 135 1 O PHE G 135 N ILE G 106 SHEET 1 H 3 THR H 43 ARG H 45 0 SHEET 2 H 3 THR H 51 TYR H 53 -1 O ASP H 52 N ASN H 44 SHEET 3 H 3 ILE H 58 ASN H 59 -1 O ILE H 58 N TYR H 53 SSBOND 1 CYS A 2 CYS A 8 1555 1555 2.05 SSBOND 2 CYS A 6 CYS A 15 1555 1555 2.56 SSBOND 3 CYS A 115 CYS A 147 1555 1555 2.04 SSBOND 4 CYS A 117 CYS A 167 1555 1555 2.07 SSBOND 5 CYS B 30 CYS B 115 1555 1555 2.01 SSBOND 6 CYS B 64 CYS B 80 1555 1555 2.02 SSBOND 7 CYS B 76 CYS B 94 1555 1555 2.09 SSBOND 8 CYS C 2 CYS C 8 1555 1555 2.04 SSBOND 9 CYS C 6 CYS C 15 1555 1555 2.06 SSBOND 10 CYS C 115 CYS C 147 1555 1555 2.05 SSBOND 11 CYS C 117 CYS C 167 1555 1555 2.05 SSBOND 12 CYS D 30 CYS D 115 1555 1555 2.05 SSBOND 13 CYS D 64 CYS D 80 1555 1555 2.07 SSBOND 14 CYS D 76 CYS D 94 1555 1555 2.05 SSBOND 15 CYS E 2 CYS E 8 1555 1555 2.06 SSBOND 16 CYS E 6 CYS E 15 1555 1555 2.08 SSBOND 17 CYS E 115 CYS E 147 1555 1555 2.02 SSBOND 18 CYS E 117 CYS E 167 1555 1555 2.04 SSBOND 19 CYS F 6 CYS F 127 1555 1555 2.86 SSBOND 20 CYS F 30 CYS F 115 1555 1555 2.00 SSBOND 21 CYS F 64 CYS F 80 1555 1555 2.10 SSBOND 22 CYS F 76 CYS F 94 1555 1555 2.11 SSBOND 23 CYS G 2 CYS G 8 1555 1555 2.07 SSBOND 24 CYS G 6 CYS G 15 1555 1555 2.10 SSBOND 25 CYS G 115 CYS G 147 1555 1555 2.03 SSBOND 26 CYS G 117 CYS G 167 1555 1555 2.05 SSBOND 27 CYS H 6 CYS H 127 1555 1555 2.10 SSBOND 28 CYS H 30 CYS H 115 1555 1555 2.03 SSBOND 29 CYS H 64 CYS H 80 1555 1555 2.06 SSBOND 30 CYS H 76 CYS H 94 1555 1555 2.10 CRYST1 82.299 133.651 90.439 90.00 114.69 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012151 0.000000 0.005586 0.00000 SCALE2 0.000000 0.007482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012170 0.00000