PDB Short entry for 3GAT HEADER TRANSCRIPTION/DNA 07-NOV-97 3GAT TITLE SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 TITLE 2 BOUND TO DNA, 34 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*CP*AP*GP*AP*TP*AP*AP*AP*CP*AP*TP*T)- COMPND 3 3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*TP*CP*TP*GP*CP*AP*AP*C)- COMPND 8 3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ERYTHROID TRANSCRIPTION FACTOR GATA-1; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: C-TERMINAL DOMAIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 7 ORGANISM_COMMON: CHICKEN; SOURCE 8 ORGANISM_TAXID: 9031; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-BINDING PROTEIN, TRANSCRIPTION FACTOR, ZINC BINDING DOMAIN, KEYWDS 2 TCOMPLEX (TRANSCRIPTION REGULATION-DNA), TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 34 AUTHOR G.M.CLORE,N.TJANDRA,M.STARICH,J.G.OMICHINSKI,A.M.GRONENBORN REVDAT 3 16-MAR-22 3GAT 1 REMARK LINK REVDAT 2 24-FEB-09 3GAT 1 VERSN REVDAT 1 28-JAN-98 3GAT 0 JRNL AUTH N.TJANDRA,J.G.OMICHINSKI,A.M.GRONENBORN,G.M.CLORE,A.BAX JRNL TITL USE OF DIPOLAR 1H-15N AND 1H-13C COUPLINGS IN THE STRUCTURE JRNL TITL 2 DETERMINATION OF MAGNETICALLY ORIENTED MACROMOLECULES IN JRNL TITL 3 SOLUTION. JRNL REF NAT.STRUCT.BIOL. V. 4 732 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9303001 JRNL DOI 10.1038/NSB0997-732 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.STARICH,M.WIKSTROM,S.SHUMACHER,H.N.ARST,A.M.GRONENBORN, REMARK 1 AUTH 2 G.M.CLORE REMARK 1 TITL THE SOLUTION STRUCTURE OF THE LEU22-->VAL MUTANT AREA DNA REMARK 1 TITL 2 BINDING DOMAIN COMPLEXED WITH A TGATAG CORE ELEMENT DEFINES REMARK 1 TITL 3 A ROLE FOR HYDROPHOBIC PACKING IN THE DETERMINATION OF REMARK 1 TITL 4 SPECIFICITY REMARK 1 REF J.MOL.BIOL. V. 277 621 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.G.OMICHINSKI,G.M.CLORE,O.SCHAAD,G.FELSENFELD,C.TRAINOR, REMARK 1 AUTH 2 E.APPELLA,S.J.STAHL,A.M.GRONENBORN REMARK 1 TITL NMR STRUCTURE OF A SPECIFIC DNA COMPLEX OF ZN-CONTAINING DNA REMARK 1 TITL 2 BINDING DOMAIN OF GATA-1 REMARK 1 REF SCIENCE V. 261 438 1993 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 3 ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. REMARK 3 229, 129 - 136 AND PROTEIN ENGINEERING 2, 27 - 38 USING REMARK 3 THE PROGRAM X-PLOR MODIFIED TO INCORPORATE DIPOLAR REMARK 3 COUPLING RESTRAINTS (TJANDRA ET AL. (1997) NATURE STRUCT REMARK 3 BIOL 4, 732-738) AND A CONFORMATIONAL DATABASE POTENTIAL REMARK 3 FOR PROTEINS AND NUCLEIC ACIDS (KUSZEWSKI ET AL. (1996) REMARK 3 PROTEIN SCI 5, 1067 - 1080 AND (1997) J. MAGN. RESON. 125, REMARK 3 171-177). THE EXPERIMENTAL RESTRAINTS ARE GIVEN IN REMARK 3 R2GATMR. REMARK 3 REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1830 EXPERIMENTAL REMARK 3 NMR RESTRAINTS COMPRISING: 1444 INTERPROTON DISTANCE REMARK 3 RESTRAINTS DERIVED FROM NOE MEASUREMENTS; 296 TORSION REMARK 3 ANGLE RESTRAINTS; 90 RESIDUAL DIPOLAR COUPLINGS (52 N-H REMARK 3 AND 38 C-H). THE NOE RESTRAINTS ARE SUBDIVIDED AS FOLLOWS: REMARK 3 (A) WITHIN THE PROTEIN: 242 INTERRESIDUE SEQUENTIAL REMARK 3 (|I-J|=1); 161 INTERRESIDUE SHORT RANGE (1(LESS REMARK 3 THAN)|I-J|(LESS THAN)=5); 182 INTERRESIDUE LONG RANGE REMARK 3 (|I-J|(GREATER THAN)5); AND 334 INTRARESIDUE. (B) WITHIN REMARK 3 THE DNA: 157 INTRARESIDUE; 180 SEQUENTIAL INTRASTRAND; 34 REMARK 3 INTERSTRAND; AND 37 H-BONDS (C) BETWEEN PROTEIN AND DNA: REMARK 3 117. THE TORSION ANGLE RESTRAINTS ARE SUBDIVIDED AS REMARK 3 FOLLOWS: 144 ANGLES FOR THE PROTEIN (58 PHI, 56 PSI, 26 REMARK 3 CHI1 AND 4 CHI2) AND 152 FOR THE DNA. THE TORSION ANGLE REMARK 3 RESTRAINTS FOR THE DNA COMPRISE LOOSE RESTRAINTS ON THE REMARK 3 BACKBONE TORSION ANGLES ALPHA, BETA, GAMMA, EPSILON AND REMARK 3 ZETA TO PREVENT PROBLEMS ASSOCIATED WITH LOCAL MIRROR REMARK 3 IMAGES. REMARK 3 REMARK 3 THE FOLLOWING TWO SETS OF COORDINATES DEFINE THE PRINCIPAL REMARK 3 AXIS OF THE MAGNETIC SUSCEPTIBILITY TENSOR: REMARK 3 MODEL 1 REMARK 3 POINT 1 0.378 -50.982 -38.862 REMARK 3 POINT 2 0.472 -49.836 -37.853 REMARK 3 MODEL 2 REMARK 3 POINT 1 9.054 -65.114 92.057 REMARK 3 POINT 2 9.125 -63.952 93.051 REMARK 3 MODEL 3 REMARK 3 POINT 1 159.392 0.215 -60.612 REMARK 3 POINT 2 159.391 1.382 -59.623 REMARK 3 MODEL 4 REMARK 3 POINT 1 1.446 -13.082 18.709 REMARK 3 POINT 2 1.560 -11.891 19.663 REMARK 3 MODEL 5 REMARK 3 POINT 1 36.350 -69.900 58.948 REMARK 3 POINT 2 36.375 -68.721 59.923 REMARK 3 MODEL 6 REMARK 3 POINT 1 126.484 -20.411 -50.611 REMARK 3 POINT 2 126.594 -19.266 -49.602 REMARK 3 MODEL 7 REMARK 3 POINT 1 88.897 -14.889 116.035 REMARK 3 POINT 2 89.009 -13.746 117.045 REMARK 3 MODEL 8 REMARK 3 POINT 1 33.575 14.467 0.174 REMARK 3 POINT 2 33.645 15.627 1.168 REMARK 3 MODEL 9 REMARK 3 POINT 1 83.455-111.061-109.708 REMARK 3 POINT 2 83.524-109.891-108.724 REMARK 3 MODEL 10 REMARK 3 POINT 1 54.992 12.813 -1.197 REMARK 3 POINT 2 55.119 13.958 -0.188 REMARK 3 MODEL 11 REMARK 3 POINT 1 -5.927 -98.366 8.457 REMARK 3 POINT 2 -5.849 -97.197 9.441 REMARK 3 MODEL 12 REMARK 3 POINT 1 -16.731 -79.619 -28.952 REMARK 3 POINT 2 -16.693 -78.486 -27.923 REMARK 3 MODEL 13 REMARK 3 POINT 1 69.885 -59.142 22.056 REMARK 3 POINT 2 69.992 -57.968 23.033 REMARK 3 MODEL 14 REMARK 3 POINT 1 60.771 80.864 -67.242 REMARK 3 POINT 2 60.765 82.035 -66.258 REMARK 3 MODEL 15 REMARK 3 POINT 1 88.367-100.303 26.657 REMARK 3 POINT 2 88.485 -99.179 27.688 REMARK 3 MODEL 16 REMARK 3 POINT 1 71.362 19.714 75.498 REMARK 3 POINT 2 71.461 20.908 76.450 REMARK 3 MODEL 17 REMARK 3 POINT 1 55.206 36.123 129.402 REMARK 3 POINT 2 55.272 37.358 130.301 REMARK 3 MODEL 18 REMARK 3 POINT 1 -0.207 63.643 9.656 REMARK 3 POINT 2 -0.119 64.869 10.566 REMARK 3 MODEL 19 REMARK 3 POINT 1 50.329 42.850 -53.654 REMARK 3 POINT 2 50.424 44.067 -52.731 REMARK 3 MODEL 20 REMARK 3 POINT 1 51.532 -39.600 87.552 REMARK 3 POINT 2 51.620 -38.437 88.540 REMARK 3 MODEL 21 REMARK 3 POINT 1 9.452 -38.136 23.088 REMARK 3 POINT 2 9.459 -36.990 24.103 REMARK 3 MODEL 22 REMARK 3 POINT 1 52.844 16.158 -59.776 REMARK 3 POINT 2 52.863 17.351 -58.818 REMARK 3 MODEL 23 REMARK 3 POINT 1 55.060 6.778 -32.793 REMARK 3 POINT 2 55.121 7.966 -31.831 REMARK 3 MODEL 24 REMARK 3 POINT 1 63.527 -10.417 -15.482 REMARK 3 POINT 2 63.570 -9.300 -14.436 REMARK 3 MODEL 25 REMARK 3 POINT 1 43.182 -28.794 21.016 REMARK 3 POINT 2 43.233 -27.638 22.017 REMARK 3 MODEL 26 REMARK 3 POINT 1 93.739 -3.416 28.751 REMARK 3 POINT 2 93.856 -2.334 29.826 REMARK 3 MODEL 27 REMARK 3 POINT 1 106.589 5.146 33.748 REMARK 3 POINT 2 106.637 6.346 34.695 REMARK 3 MODEL 28 REMARK 3 POINT 1 51.597 -15.726 20.577 REMARK 3 POINT 2 51.712 -14.540 21.538 REMARK 3 MODEL 29 REMARK 3 POINT 1 63.361 -27.745 -32.153 REMARK 3 POINT 2 63.448 -26.576 -31.169 REMARK 3 MODEL 30 REMARK 3 POINT 1 -59.343 5.979 38.193 REMARK 3 POINT 2 -59.203 7.083 39.244 REMARK 3 MODEL 31 REMARK 3 POINT 1 -4.120-119.412 -63.274 REMARK 3 POINT 2 -4.040-118.211 -62.331 REMARK 3 MODEL 32 REMARK 3 POINT 1 38.468 -28.280 -19.797 REMARK 3 POINT 2 38.602 -27.192 -18.729 REMARK 3 MODEL 33 REMARK 3 POINT 1 139.677-206.067 -84.072 REMARK 3 POINT 2 139.702-204.924 -83.054 REMARK 3 MODEL 34 REMARK 3 POINT 1 35.819 -48.400 -10.080 REMARK 3 POINT 2 35.876 -47.237 -9.088 REMARK 4 REMARK 4 3GAT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178975. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 360 MHZ; 750 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AM360; DMX500; AMX600; DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR MODIFIED MODIFIED REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 34 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 34 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: DATA WERE RECORDED ON A 1:1 COMPLEX OF 1 MOLECULE OF DNA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 35 H GLN A 39 1.44 REMARK 500 O CYS A 7 H GLN A 11 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT B 102 C5 DT B 102 C7 0.037 REMARK 500 1 DT B 103 C5 DT B 103 C7 0.037 REMARK 500 1 DT B 109 C5 DT B 109 C7 0.037 REMARK 500 1 DT B 115 C5 DT B 115 C7 0.037 REMARK 500 1 DT B 116 C5 DT B 116 C7 0.038 REMARK 500 1 DT C 122 C5 DT C 122 C7 0.038 REMARK 500 1 DT C 123 C5 DT C 123 C7 0.037 REMARK 500 1 DT C 127 C5 DT C 127 C7 0.036 REMARK 500 2 DT B 102 C5 DT B 102 C7 0.037 REMARK 500 2 DT B 103 C5 DT B 103 C7 0.037 REMARK 500 2 DT B 109 C5 DT B 109 C7 0.037 REMARK 500 2 DT B 115 C5 DT B 115 C7 0.037 REMARK 500 2 DT B 116 C5 DT B 116 C7 0.036 REMARK 500 3 DT B 102 C5 DT B 102 C7 0.037 REMARK 500 3 DT B 103 C5 DT B 103 C7 0.037 REMARK 500 3 DT B 109 C5 DT B 109 C7 0.037 REMARK 500 3 DT B 115 C5 DT B 115 C7 0.038 REMARK 500 3 DT B 116 C5 DT B 116 C7 0.036 REMARK 500 3 DT C 119 C5 DT C 119 C7 0.037 REMARK 500 3 DT C 122 C5 DT C 122 C7 0.037 REMARK 500 3 DT C 123 C5 DT C 123 C7 0.037 REMARK 500 3 DT C 127 C5 DT C 127 C7 0.037 REMARK 500 4 DT B 103 C5 DT B 103 C7 0.038 REMARK 500 4 DT B 109 C5 DT B 109 C7 0.037 REMARK 500 4 DT B 115 C5 DT B 115 C7 0.037 REMARK 500 4 DT B 116 C5 DT B 116 C7 0.037 REMARK 500 4 DT C 121 C5 DT C 121 C7 0.040 REMARK 500 4 DT C 122 C5 DT C 122 C7 0.039 REMARK 500 4 DT C 123 C5 DT C 123 C7 0.037 REMARK 500 4 DT C 127 C5 DT C 127 C7 0.038 REMARK 500 5 DT B 103 C5 DT B 103 C7 0.038 REMARK 500 5 DT B 109 C5 DT B 109 C7 0.036 REMARK 500 5 DT B 115 C5 DT B 115 C7 0.037 REMARK 500 5 DT C 119 C5 DT C 119 C7 0.038 REMARK 500 5 DT C 122 C5 DT C 122 C7 0.037 REMARK 500 5 DT C 123 C5 DT C 123 C7 0.038 REMARK 500 5 DT C 127 C5 DT C 127 C7 0.036 REMARK 500 6 DT B 103 C5 DT B 103 C7 0.037 REMARK 500 6 DT B 109 C5 DT B 109 C7 0.038 REMARK 500 6 DT C 119 C5 DT C 119 C7 0.037 REMARK 500 6 DT C 121 C5 DT C 121 C7 0.036 REMARK 500 6 DT C 122 C5 DT C 122 C7 0.039 REMARK 500 6 DT C 123 C5 DT C 123 C7 0.037 REMARK 500 6 DT C 127 C5 DT C 127 C7 0.037 REMARK 500 7 DT B 102 C5 DT B 102 C7 0.038 REMARK 500 7 DT B 103 C5 DT B 103 C7 0.036 REMARK 500 7 DT C 119 C5 DT C 119 C7 0.036 REMARK 500 7 DT C 122 C5 DT C 122 C7 0.037 REMARK 500 7 DT C 123 C5 DT C 123 C7 0.039 REMARK 500 8 DT B 102 C5 DT B 102 C7 0.036 REMARK 500 REMARK 500 THIS ENTRY HAS 208 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG B 101 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DT B 102 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DT B 103 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DG B 104 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DC B 105 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DA B 106 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG B 107 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DA B 108 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DT B 109 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA B 110 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DA B 111 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA B 112 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DC B 113 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DA B 114 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DT B 115 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT B 116 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DA C 117 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DA C 118 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DT C 119 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG C 120 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DT C 121 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DT C 122 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DT C 123 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DA C 124 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DT C 125 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DC C 126 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DT C 127 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DG C 128 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC C 129 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA C 130 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA C 131 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DC C 132 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DG B 101 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DT B 102 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DT B 103 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DG B 104 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DC B 105 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DA B 106 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG B 107 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 DA B 108 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DT B 109 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DA B 110 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DA B 111 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DA B 112 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 DC B 113 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DA B 114 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DT B 115 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 DT B 116 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DA C 117 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DA C 118 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1067 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 11 1.16 57.21 REMARK 500 1 ASP A 49 -83.80 -46.27 REMARK 500 1 VAL A 58 150.18 -42.11 REMARK 500 1 LYS A 61 -93.24 -90.02 REMARK 500 2 GLN A 11 4.56 57.16 REMARK 500 2 THR A 14 48.22 -106.05 REMARK 500 2 GLN A 39 59.19 35.92 REMARK 500 2 PRO A 43 151.79 -47.37 REMARK 500 2 ASP A 49 5.05 -61.44 REMARK 500 2 LYS A 61 89.40 -167.91 REMARK 500 3 GLN A 11 -0.92 63.29 REMARK 500 3 SER A 21 156.88 -31.40 REMARK 500 3 GLN A 39 42.21 36.62 REMARK 500 3 LEU A 44 18.44 -65.23 REMARK 500 3 ASP A 49 -85.49 -41.55 REMARK 500 3 VAL A 58 163.03 -46.17 REMARK 500 3 LYS A 64 113.50 -169.92 REMARK 500 4 GLN A 11 0.06 56.04 REMARK 500 4 THR A 14 49.17 -100.34 REMARK 500 4 GLN A 39 46.63 32.97 REMARK 500 4 LEU A 44 7.22 -60.06 REMARK 500 4 ASP A 49 2.11 -52.95 REMARK 500 4 LYS A 57 -167.90 -64.77 REMARK 500 5 GLN A 11 1.49 59.33 REMARK 500 5 THR A 45 -16.89 -43.53 REMARK 500 5 ASP A 49 -79.46 -49.09 REMARK 500 5 LYS A 57 -169.16 -68.28 REMARK 500 6 ALA A 3 115.78 -36.22 REMARK 500 6 GLN A 11 0.26 56.10 REMARK 500 6 GLN A 39 48.90 35.58 REMARK 500 6 PRO A 43 45.80 -63.00 REMARK 500 6 LEU A 44 13.59 45.87 REMARK 500 6 ASP A 49 6.35 -55.61 REMARK 500 6 LYS A 57 -169.36 -66.12 REMARK 500 6 SER A 60 55.33 -150.24 REMARK 500 7 GLN A 11 -2.60 64.20 REMARK 500 7 LEU A 44 24.52 -66.12 REMARK 500 7 ASP A 49 -84.58 -41.73 REMARK 500 8 HIS A 38 -71.19 -101.70 REMARK 500 8 GLN A 39 55.44 116.15 REMARK 500 8 PRO A 43 151.60 -48.90 REMARK 500 8 ASP A 49 4.37 -56.91 REMARK 500 8 LYS A 57 159.44 -40.44 REMARK 500 9 GLN A 11 -1.01 55.33 REMARK 500 9 PRO A 43 152.20 -45.51 REMARK 500 9 ASP A 49 2.73 -51.25 REMARK 500 9 LYS A 57 -168.66 -70.26 REMARK 500 10 GLN A 11 -1.43 51.74 REMARK 500 10 PRO A 43 150.93 -48.42 REMARK 500 10 THR A 45 -13.27 -46.49 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 26 DA B 108 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 67 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 108.2 REMARK 620 3 CYS A 28 SG 110.2 113.1 REMARK 620 4 CYS A 31 SG 108.7 109.1 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 67 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GAT RELATED DB: PDB REMARK 900 REGULARIZED MEAN STRUCTURE DBREF 3GAT A 1 66 UNP P17678 GATA1_CHICK 158 223 DBREF 3GAT B 101 116 PDB 3GAT 3GAT 101 116 DBREF 3GAT C 117 132 PDB 3GAT 3GAT 117 132 SEQRES 1 B 16 DG DT DT DG DC DA DG DA DT DA DA DA DC SEQRES 2 B 16 DA DT DT SEQRES 1 C 16 DA DA DT DG DT DT DT DA DT DC DT DG DC SEQRES 2 C 16 DA DA DC SEQRES 1 A 66 LYS ARG ALA GLY THR VAL CYS SER ASN CYS GLN THR SER SEQRES 2 A 66 THR THR THR LEU TRP ARG ARG SER PRO MET GLY ASP PRO SEQRES 3 A 66 VAL CYS ASN ALA CYS GLY LEU TYR TYR LYS LEU HIS GLN SEQRES 4 A 66 VAL ASN ARG PRO LEU THR MET ARG LYS ASP GLY ILE GLN SEQRES 5 A 66 THR ARG ASN ARG LYS VAL SER SER LYS GLY LYS LYS ARG SEQRES 6 A 66 ARG HET ZN A 67 1 HETNAM ZN ZINC ION FORMUL 4 ZN ZN 2+ HELIX 1 1 ASN A 29 HIS A 38 1 10 HELIX 2 2 LEU A 44 MET A 46 5 3 SHEET 1 A 2 TRP A 18 ARG A 20 0 SHEET 2 A 2 PRO A 26 CYS A 28 -1 N VAL A 27 O ARG A 19 LINK SG CYS A 7 ZN ZN A 67 1555 1555 2.27 LINK SG CYS A 10 ZN ZN A 67 1555 1555 2.30 LINK SG CYS A 28 ZN ZN A 67 1555 1555 2.33 LINK SG CYS A 31 ZN ZN A 67 1555 1555 2.27 SITE 1 AC1 4 CYS A 7 CYS A 10 CYS A 28 CYS A 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000