PDB Short entry for 3GAX HEADER HYDROLASE INHIBITOR 18-FEB-09 3GAX TITLE CRYSTAL STRUCTURE OF MONOMERIC HUMAN CYSTATIN C STABILIZED AGAINST TITLE 2 AGGREGATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATIN-C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN CYSTATIN C STAB1: UNP RESIDUES 27-146; COMPND 5 SYNONYM: CYSTATIN-3, NEUROENDOCRINE BASIC POLYPEPTIDE, GAMMA-TRACE, COMPND 6 POST-GAMMA-GLOBULIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CST3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MC1061; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHD 313 KEYWDS CYSTEINE PROTEASE INHIBITOR, 3D DOMAIN SWAPPING, PROTEIN AGGREGATION, KEYWDS 2 AMYLOID, PROTEIN ENGINEERING, TWINNING, HEREDITARY CYSTATIN C KEYWDS 3 AMYLOID ANGIOPATHY, AMYLOIDOSIS, DISEASE MUTATION, POLYMORPHISM, KEYWDS 4 PROTEASE INHIBITOR, SECRETED, THIOL PROTEASE INHIBITOR, HYDROLASE KEYWDS 5 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR R.KOLODZIEJCZYK,K.MICHALSKA,A.HERNANDEZ-SANTOYO,M.WAHLBOM,A.GRUBB, AUTHOR 2 M.JASKOLSKI REVDAT 6 06-SEP-23 3GAX 1 REMARK REVDAT 5 20-OCT-21 3GAX 1 REMARK SEQADV REVDAT 4 01-NOV-17 3GAX 1 REMARK REVDAT 3 28-APR-10 3GAX 1 JRNL REVDAT 2 09-MAR-10 3GAX 1 JRNL REVDAT 1 23-FEB-10 3GAX 0 JRNL AUTH R.KOLODZIEJCZYK,K.MICHALSKA,A.HERNANDEZ-SANTOYO,M.WAHLBOM, JRNL AUTH 2 A.GRUBB,M.JASKOLSKI JRNL TITL CRYSTAL STRUCTURE OF HUMAN CYSTATIN C STABILIZED AGAINST JRNL TITL 2 AMYLOID FORMATION. JRNL REF FEBS J. V. 277 1726 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20175878 JRNL DOI 10.1111/J.1742-4658.2010.07596.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM, INCLUDING TWIN-LAW REMARK 3 RELATED PAIRS REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.28000 REMARK 3 B22 (A**2) : 3.28000 REMARK 3 B33 (A**2) : -6.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.014 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1905 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1317 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2608 ; 1.746 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3180 ; 0.938 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 7.418 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;37.010 ;23.367 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 319 ;16.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2226 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 417 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1171 ; 1.027 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 461 ; 0.337 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1911 ; 1.667 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ; 2.500 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 688 ; 3.721 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.548 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K,K,-L REMARK 3 TWIN FRACTION : 0.452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8794 32.2345 51.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2762 REMARK 3 T33: 0.1007 T12: -0.0820 REMARK 3 T13: 0.0233 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 5.0654 L22: 6.0491 REMARK 3 L33: 8.4969 L12: -0.2642 REMARK 3 L13: 1.3330 L23: 2.6443 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.4438 S13: -0.4750 REMARK 3 S21: -0.3539 S22: 0.1506 S23: -0.1173 REMARK 3 S31: 0.5146 S32: 0.0848 S33: -0.0784 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5164 42.7056 62.8968 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1720 REMARK 3 T33: 0.0870 T12: -0.0075 REMARK 3 T13: 0.0071 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.3444 L22: 5.8418 REMARK 3 L33: 10.8250 L12: 1.7333 REMARK 3 L13: 1.6758 L23: 4.4422 REMARK 3 S TENSOR REMARK 3 S11: -0.1356 S12: -0.0398 S13: 0.1899 REMARK 3 S21: -0.1416 S22: -0.0833 S23: 0.2235 REMARK 3 S31: -0.3442 S32: -0.4168 S33: 0.2189 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8298 41.0246 61.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.2097 REMARK 3 T33: 0.0425 T12: -0.0174 REMARK 3 T13: -0.0207 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.9830 L22: 5.1185 REMARK 3 L33: 2.3467 L12: 1.6943 REMARK 3 L13: -0.2796 L23: 1.3070 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.1327 S13: 0.0137 REMARK 3 S21: -0.1369 S22: 0.1131 S23: -0.1824 REMARK 3 S31: 0.0014 S32: -0.0490 S33: -0.1244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4099 41.2402 61.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2428 REMARK 3 T33: 0.0570 T12: -0.0075 REMARK 3 T13: -0.0004 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 4.1994 L22: 6.9009 REMARK 3 L33: 1.9812 L12: 4.2823 REMARK 3 L13: 0.4370 L23: 1.4632 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0650 S13: 0.0217 REMARK 3 S21: -0.0773 S22: 0.0670 S23: 0.0209 REMARK 3 S31: -0.1081 S32: -0.0796 S33: -0.0916 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1456 56.6562 61.6604 REMARK 3 T TENSOR REMARK 3 T11: 0.3438 T22: 0.3987 REMARK 3 T33: 0.4272 T12: 0.1302 REMARK 3 T13: 0.0067 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.2158 L22: 3.5321 REMARK 3 L33: 4.5506 L12: 2.0556 REMARK 3 L13: -1.0147 L23: -1.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.2193 S12: 0.6792 S13: 1.0837 REMARK 3 S21: -0.5322 S22: -0.0470 S23: 1.3998 REMARK 3 S31: -0.9271 S32: -1.1516 S33: -0.1722 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2995 50.2403 63.7194 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.1925 REMARK 3 T33: 0.0600 T12: -0.0567 REMARK 3 T13: 0.0469 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 3.7037 L22: 7.1887 REMARK 3 L33: 4.6795 L12: 3.5443 REMARK 3 L13: -1.0444 L23: 0.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.1621 S12: 0.0591 S13: 0.0813 REMARK 3 S21: -0.0620 S22: -0.0242 S23: -0.4568 REMARK 3 S31: -0.3866 S32: 0.1725 S33: -0.1379 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2932 33.2115 62.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1900 REMARK 3 T33: 0.0998 T12: -0.0200 REMARK 3 T13: -0.0213 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 11.3886 L22: 2.9867 REMARK 3 L33: 3.5834 L12: 2.4885 REMARK 3 L13: 4.3925 L23: 1.3747 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: -0.1146 S13: 0.0609 REMARK 3 S21: -0.1726 S22: 0.0104 S23: 0.4247 REMARK 3 S31: -0.0805 S32: -0.3565 S33: 0.1562 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0998 36.2403 68.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1549 REMARK 3 T33: 0.0278 T12: -0.0134 REMARK 3 T13: -0.0209 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 20.1540 L22: 4.5787 REMARK 3 L33: 4.7666 L12: 3.6319 REMARK 3 L13: 3.7236 L23: 1.1844 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: -0.1754 S13: 0.0928 REMARK 3 S21: 0.0071 S22: 0.1133 S23: -0.3136 REMARK 3 S31: -0.1573 S32: 0.2161 S33: 0.0541 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3128 63.1056 59.5612 REMARK 3 T TENSOR REMARK 3 T11: 0.3494 T22: 0.1888 REMARK 3 T33: 0.1216 T12: -0.0124 REMARK 3 T13: -0.0443 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 6.6990 L22: 5.4925 REMARK 3 L33: 8.4719 L12: -0.1787 REMARK 3 L13: -3.2779 L23: -0.8385 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.3032 S13: 0.2476 REMARK 3 S21: 0.2180 S22: -0.0508 S23: -0.4948 REMARK 3 S31: 0.0027 S32: 0.3882 S33: 0.0686 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5669 60.6460 47.7792 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1748 REMARK 3 T33: 0.0705 T12: 0.0011 REMARK 3 T13: 0.0279 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 3.9670 L22: 7.7154 REMARK 3 L33: 6.2799 L12: 2.3868 REMARK 3 L13: 2.8191 L23: 2.9850 REMARK 3 S TENSOR REMARK 3 S11: -0.1305 S12: 0.0259 S13: 0.2559 REMARK 3 S21: -0.1040 S22: -0.0550 S23: 0.4944 REMARK 3 S31: -0.2008 S32: -0.4473 S33: 0.1854 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0988 52.9197 48.5409 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1702 REMARK 3 T33: 0.0656 T12: -0.0174 REMARK 3 T13: 0.0284 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 4.0733 L22: 5.9620 REMARK 3 L33: 3.3942 L12: 2.3816 REMARK 3 L13: 1.4411 L23: 0.9653 REMARK 3 S TENSOR REMARK 3 S11: 0.1573 S12: -0.0969 S13: -0.2449 REMARK 3 S21: 0.1379 S22: -0.0106 S23: -0.0143 REMARK 3 S31: 0.1548 S32: -0.2408 S33: -0.1466 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2810 68.9201 51.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.1653 REMARK 3 T33: 0.1101 T12: -0.0602 REMARK 3 T13: 0.0097 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 5.3004 L22: 13.0563 REMARK 3 L33: 4.1861 L12: 1.1688 REMARK 3 L13: 1.2794 L23: 1.5829 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: 0.0272 S13: 0.4843 REMARK 3 S21: 0.0777 S22: 0.0733 S23: -0.5504 REMARK 3 S31: -0.6639 S32: 0.3199 S33: 0.0327 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6279 48.5751 47.8055 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.1694 REMARK 3 T33: 0.0989 T12: -0.0385 REMARK 3 T13: 0.0028 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 7.8580 L22: 8.1273 REMARK 3 L33: 3.8646 L12: 5.5102 REMARK 3 L13: 4.0387 L23: 2.6234 REMARK 3 S TENSOR REMARK 3 S11: 0.1930 S12: -0.0682 S13: -0.3448 REMARK 3 S21: 0.1223 S22: 0.0378 S23: -0.1006 REMARK 3 S31: 0.2564 S32: -0.1500 S33: -0.2307 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3021 50.4365 47.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.5567 T22: 0.5420 REMARK 3 T33: 0.2868 T12: 0.1376 REMARK 3 T13: -0.1033 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.1753 L22: 8.6183 REMARK 3 L33: 0.4134 L12: -1.2289 REMARK 3 L13: 0.0211 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.1585 S13: 0.1383 REMARK 3 S21: 0.8220 S22: -0.0851 S23: 0.6270 REMARK 3 S31: -0.4798 S32: -0.3628 S33: 0.1164 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8207 42.4238 45.6956 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.1356 REMARK 3 T33: 0.1845 T12: -0.0451 REMARK 3 T13: -0.0619 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 5.0941 L22: 7.7562 REMARK 3 L33: 2.3369 L12: 3.0953 REMARK 3 L13: -0.3307 L23: -0.5324 REMARK 3 S TENSOR REMARK 3 S11: 0.1841 S12: -0.0271 S13: -0.9650 REMARK 3 S21: -0.1458 S22: -0.0388 S23: -0.4614 REMARK 3 S31: 0.4507 S32: -0.2754 S33: -0.1453 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5149 64.8749 45.4596 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.1780 REMARK 3 T33: 0.0374 T12: -0.0016 REMARK 3 T13: 0.0053 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.7411 L22: 9.9909 REMARK 3 L33: 2.6605 L12: 1.3845 REMARK 3 L13: 0.0949 L23: 1.8016 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0290 S13: 0.1976 REMARK 3 S21: -0.1927 S22: -0.0547 S23: -0.0175 REMARK 3 S31: -0.2497 S32: -0.1096 S33: 0.0552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : TWO MIRRORS AND DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR BETWEEN THEM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35237 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.89600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25M AMMONIUM PHOSPHATE, 150MM SODIUM REMARK 280 PHOSPHATE BUFFER, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.52533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.05067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.78800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.31333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.26267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 78 REMARK 465 ASN A 79 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 LEU B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 80 REMARK 465 ASP B 81 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 36 CE NZ REMARK 480 LEU A 80 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 57 -147.43 -130.94 REMARK 500 CYS A 83 106.34 -38.33 REMARK 500 VAL B 57 -133.42 -112.89 REMARK 500 CYS B 83 123.49 -39.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G96 RELATED DB: PDB REMARK 900 DIMERIC FORM OF HUMAN CYSTATIN C REMARK 900 RELATED ID: 1R4C RELATED DB: PDB REMARK 900 DIMERIC FORM OF N-TRUNCATED HUMAN CYSTATIN C REMARK 900 RELATED ID: 1TIJ RELATED DB: PDB REMARK 900 DIMERIC FORM OF HUMAN CYSTATIN C DBREF 3GAX A 1 120 UNP P01034 CYTC_HUMAN 27 146 DBREF 3GAX B 1 120 UNP P01034 CYTC_HUMAN 27 146 SEQADV 3GAX CYS A 47 UNP P01034 LEU 73 ENGINEERED MUTATION SEQADV 3GAX CYS A 69 UNP P01034 GLY 95 ENGINEERED MUTATION SEQADV 3GAX CYS B 47 UNP P01034 LEU 73 ENGINEERED MUTATION SEQADV 3GAX CYS B 69 UNP P01034 GLY 95 ENGINEERED MUTATION SEQRES 1 A 120 SER SER PRO GLY LYS PRO PRO ARG LEU VAL GLY GLY PRO SEQRES 2 A 120 MET ASP ALA SER VAL GLU GLU GLU GLY VAL ARG ARG ALA SEQRES 3 A 120 LEU ASP PHE ALA VAL GLY GLU TYR ASN LYS ALA SER ASN SEQRES 4 A 120 ASP MET TYR HIS SER ARG ALA CYS GLN VAL VAL ARG ALA SEQRES 5 A 120 ARG LYS GLN ILE VAL ALA GLY VAL ASN TYR PHE LEU ASP SEQRES 6 A 120 VAL GLU LEU CYS ARG THR THR CYS THR LYS THR GLN PRO SEQRES 7 A 120 ASN LEU ASP ASN CYS PRO PHE HIS ASP GLN PRO HIS LEU SEQRES 8 A 120 LYS ARG LYS ALA PHE CYS SER PHE GLN ILE TYR ALA VAL SEQRES 9 A 120 PRO TRP GLN GLY THR MET THR LEU SER LYS SER THR CYS SEQRES 10 A 120 GLN ASP ALA SEQRES 1 B 120 SER SER PRO GLY LYS PRO PRO ARG LEU VAL GLY GLY PRO SEQRES 2 B 120 MET ASP ALA SER VAL GLU GLU GLU GLY VAL ARG ARG ALA SEQRES 3 B 120 LEU ASP PHE ALA VAL GLY GLU TYR ASN LYS ALA SER ASN SEQRES 4 B 120 ASP MET TYR HIS SER ARG ALA CYS GLN VAL VAL ARG ALA SEQRES 5 B 120 ARG LYS GLN ILE VAL ALA GLY VAL ASN TYR PHE LEU ASP SEQRES 6 B 120 VAL GLU LEU CYS ARG THR THR CYS THR LYS THR GLN PRO SEQRES 7 B 120 ASN LEU ASP ASN CYS PRO PHE HIS ASP GLN PRO HIS LEU SEQRES 8 B 120 LYS ARG LYS ALA PHE CYS SER PHE GLN ILE TYR ALA VAL SEQRES 9 B 120 PRO TRP GLN GLY THR MET THR LEU SER LYS SER THR CYS SEQRES 10 B 120 GLN ASP ALA FORMUL 3 HOH *180(H2 O) HELIX 1 1 GLU A 20 SER A 38 1 19 HELIX 2 2 GLN A 88 ARG A 93 1 6 HELIX 3 3 GLU B 20 SER B 38 1 19 HELIX 4 4 GLN B 88 ARG B 93 1 6 HELIX 5 5 PRO B 105 GLY B 108 5 4 SHEET 1 A 5 MET A 14 ALA A 16 0 SHEET 2 A 5 TYR A 42 ILE A 56 -1 O LYS A 54 N MET A 14 SHEET 3 A 5 VAL A 60 THR A 74 -1 O CYS A 69 N ARG A 45 SHEET 4 A 5 ALA A 95 VAL A 104 -1 O ALA A 103 N VAL A 60 SHEET 5 A 5 THR A 109 ASP A 119 -1 O GLN A 118 N PHE A 96 SHEET 1 B 5 MET B 14 ASP B 15 0 SHEET 2 B 5 TYR B 42 ILE B 56 -1 O LYS B 54 N MET B 14 SHEET 3 B 5 VAL B 60 THR B 74 -1 O ASP B 65 N ARG B 51 SHEET 4 B 5 ALA B 95 VAL B 104 -1 O ALA B 103 N VAL B 60 SHEET 5 B 5 THR B 109 ASP B 119 -1 O GLN B 118 N PHE B 96 SSBOND 1 CYS A 47 CYS A 69 1555 1555 2.04 SSBOND 2 CYS A 73 CYS A 83 1555 1555 2.02 SSBOND 3 CYS A 97 CYS A 117 1555 1555 2.11 SSBOND 4 CYS B 47 CYS B 69 1555 1555 2.10 SSBOND 5 CYS B 73 CYS B 83 1555 1555 2.29 SSBOND 6 CYS B 97 CYS B 117 1555 1555 2.12 CRYST1 76.260 76.260 97.576 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013113 0.007571 0.000000 0.00000 SCALE2 0.000000 0.015142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010248 0.00000