PDB Short entry for 3GFC HEADER TRANSCRIPTION 26-FEB-09 3GFC TITLE CRYSTAL STRUCTURE OF HISTONE-BINDING PROTEIN RBBP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RETINOBLASTOMA-BINDING PROTEIN 4, RBBP-4, RETINOBLASTOMA- COMPND 5 BINDING PROTEIN P48, CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C, CAF-1 COMPND 6 SUBUNIT C, CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT, CAF-I 48 KDA COMPND 7 SUBUNIT, CAF-I P48, NUCLEOSOME-REMODELING FACTOR SUBUNIT RBAP48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS RBBP4, HISTONE-BINDING PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, CELL CYCLE, CHROMATIN REGULATOR, DNA KEYWDS 3 REPLICATION, NUCLEUS, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, WD REPEAT EXPDTA X-RAY DIFFRACTION AUTHOR M.F.AMAYA,A.DONG,Z.LI,H.HE,S.NI,A.M.EDWARDS,C.H.ARROWSMITH,J.WEIGELT, AUTHOR 2 C.BOUNTRA,A.BOCHKAREV,J.MIN,H.OUYANG,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 7 06-SEP-23 3GFC 1 REMARK REVDAT 6 01-NOV-17 3GFC 1 REMARK REVDAT 5 13-JUL-11 3GFC 1 VERSN REVDAT 4 20-APR-11 3GFC 1 JRNL REVDAT 3 17-NOV-10 3GFC 1 SOURCE REVDAT 2 25-AUG-09 3GFC 1 REMARK REVDAT 1 14-APR-09 3GFC 0 JRNL AUTH C.XU,J.MIN JRNL TITL STRUCTURE AND FUNCTION OF WD40 DOMAIN PROTEINS. JRNL REF PROTEIN CELL V. 2 202 2011 JRNL REFN ISSN 1674-800X JRNL PMID 21468892 JRNL DOI 10.1007/S13238-011-1018-1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1165 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -2.27000 REMARK 3 B33 (A**2) : 2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.327 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2654 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3634 ; 1.721 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 7.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.224 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;15.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2028 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1095 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1722 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1727 ; 0.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2708 ; 1.380 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1079 ; 2.207 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 3.272 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3519 20.1272 13.0848 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.1215 REMARK 3 T33: 0.1057 T12: -0.0090 REMARK 3 T13: -0.0013 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.1465 L22: 1.8267 REMARK 3 L33: 1.1595 L12: 0.3083 REMARK 3 L13: -0.6299 L23: -0.2809 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.1558 S13: 0.0329 REMARK 3 S21: 0.0280 S22: -0.0710 S23: 0.0129 REMARK 3 S31: 0.0350 S32: 0.1345 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1348 16.9508 25.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1309 REMARK 3 T33: 0.1127 T12: -0.0185 REMARK 3 T13: 0.1244 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7306 L22: 2.8741 REMARK 3 L33: 1.2401 L12: -0.0720 REMARK 3 L13: -0.3077 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.2785 S13: -0.0193 REMARK 3 S21: 0.4712 S22: -0.0660 S23: 0.4458 REMARK 3 S31: 0.0943 S32: 0.0625 S33: 0.0263 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17716 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 88.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4950 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3CFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MGCL2, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.82250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.10150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.60700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.10150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.82250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.60700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 VAL A 16 REMARK 465 ILE A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 TYR A 21 REMARK 465 LYS A 22 REMARK 465 ILE A 23 REMARK 465 ARG A 55 REMARK 465 PRO A 56 REMARK 465 GLU A 57 REMARK 465 GLY A 58 REMARK 465 LYS A 59 REMARK 465 SER A 73 REMARK 465 ASP A 74 REMARK 465 GLU A 75 REMARK 465 ASP A 89 REMARK 465 ASP A 90 REMARK 465 ALA A 91 REMARK 465 GLN A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 TYR A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 PHE A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 PHE A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 PRO A 163 REMARK 465 SER A 164 REMARK 465 GLY A 165 REMARK 465 GLU A 166 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 GLN A 354 REMARK 465 SER A 355 REMARK 465 PRO A 356 REMARK 465 GLU A 357 REMARK 465 ASP A 358 REMARK 465 ALA A 359 REMARK 465 GLU A 360 REMARK 465 ASP A 361 REMARK 465 GLY A 362 REMARK 465 ASP A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 VAL A 35 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 TRP A 42 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 42 CZ3 CH2 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 ASP A 60 CG OD1 OD2 REMARK 470 PHE A 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 72 OG1 CG2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 VAL A 149 CG1 CG2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 SER A 159 CB OG REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 GLU A 213 CB CG CD OE1 OE2 REMARK 470 ASN A 260 CG OD1 ND2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ALA A 274 CB REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LEU A 308 CG CD1 CD2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 SER A 315 OG REMARK 470 LYS A 317 CB CG CD CE NZ REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 ASN A 397 CG OD1 ND2 REMARK 470 ILE A 398 CG1 CG2 CD1 REMARK 470 ASN A 407 CG OD1 ND2 REMARK 470 ASN A 410 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 242 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 84.12 -159.71 REMARK 500 PRO A 137 -3.63 -57.92 REMARK 500 TYR A 154 -7.60 -58.46 REMARK 500 PRO A 158 157.04 -43.40 REMARK 500 ASP A 249 2.02 -69.02 REMARK 500 ALA A 274 -166.96 -164.52 REMARK 500 ALA A 294 -9.96 -57.88 REMARK 500 ASP A 339 4.40 -67.43 REMARK 500 TRP A 388 -3.99 71.71 REMARK 500 ASN A 397 -7.56 95.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 3GFC A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 SEQRES 1 A 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 A 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 A 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 A 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 A 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 A 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 A 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 A 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 A 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 A 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 A 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 A 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 A 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 A 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 A 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 A 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 A 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 A 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 A 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 A 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 A 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 A 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 A 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 A 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 A 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 A 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 A 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 A 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 A 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 A 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 A 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 A 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 A 425 SER VAL ASP PRO GLU GLY GLN GLY SER FORMUL 2 HOH *70(H2 O) HELIX 1 1 ASN A 27 LEU A 31 1 5 HELIX 2 2 THR A 155 HIS A 157 5 3 HELIX 3 3 SER A 208 VAL A 210 5 3 HELIX 4 4 SER A 348 ILE A 350 5 3 HELIX 5 5 ALA A 405 ASN A 410 1 6 SHEET 1 A 4 TYR A 32 ALA A 39 0 SHEET 2 A 4 ILE A 398 MET A 404 -1 O MET A 399 N HIS A 38 SHEET 3 A 4 VAL A 389 SER A 394 -1 N SER A 394 O ILE A 398 SHEET 4 A 4 ILE A 377 TRP A 382 -1 N SER A 381 O CYS A 391 SHEET 1 B 4 ALA A 47 TRP A 49 0 SHEET 2 B 4 PHE A 61 GLY A 69 -1 O VAL A 67 N GLN A 48 SHEET 3 B 4 ASN A 77 PRO A 87 -1 O VAL A 84 N HIS A 64 SHEET 4 B 4 ILE A 115 HIS A 123 -1 O GLU A 116 N SER A 83 SHEET 1 C 5 ARG A 129 MET A 133 0 SHEET 2 C 5 ASN A 136 LYS A 143 -1 O ILE A 139 N MET A 133 SHEET 3 C 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 C 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 C 5 VAL A 216 ASP A 218 1 O VAL A 217 N ARG A 174 SHEET 1 D 4 LEU A 183 TRP A 185 0 SHEET 2 D 4 HIS A 192 ALA A 196 -1 O LEU A 194 N SER A 184 SHEET 3 D 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 D 4 THR A 221 PHE A 223 -1 O PHE A 223 N ILE A 202 SHEET 1 E 4 VAL A 230 TRP A 235 0 SHEET 2 E 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 E 4 LYS A 251 ASP A 256 -1 O TRP A 255 N PHE A 243 SHEET 4 E 4 HIS A 267 ASP A 270 -1 O HIS A 267 N ILE A 254 SHEET 1 F 4 VAL A 276 PHE A 281 0 SHEET 2 F 4 ILE A 288 SER A 293 -1 O GLY A 292 N ASN A 277 SHEET 3 F 4 VAL A 298 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 F 4 HIS A 311 PHE A 313 -1 O PHE A 313 N VAL A 298 SHEET 1 G 4 ILE A 320 TRP A 325 0 SHEET 2 G 4 ILE A 332 GLY A 337 -1 O ALA A 334 N GLN A 324 SHEET 3 G 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 G 4 LEU A 366 HIS A 370 -1 O HIS A 370 N LEU A 342 CISPEP 1 GLU A 314 SER A 315 0 -9.83 CRYST1 49.645 87.214 88.203 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011337 0.00000