PDB Short entry for 3GIJ HEADER TRANSFERASE/DNA 05-MAR-09 3GIJ TITLE DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(SYN)-A(ANTI) AND OXOG(ANTI)- TITLE 2 A(SYN) PAIRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*TP*AP*AP*CP*(8OG) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: OXOG-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 ATCC: 35092; SOURCE 6 GENE: DBH, DPO4, SSO2448; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: DNA PRIMER STRAND; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: DNA OXOG-MODIFIED TEMPLATE STRAND KEYWDS DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, DNA DAMAGE, KEYWDS 2 DNA REPAIR, DNA REPLICATION, DNA-BINDING, DNA-DIRECTED DNA KEYWDS 3 POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 4 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 4 06-SEP-23 3GIJ 1 REMARK DBREF SEQADV LINK REVDAT 3 07-DEC-11 3GIJ 1 JRNL REVDAT 2 13-JUL-11 3GIJ 1 VERSN REVDAT 1 19-MAY-09 3GIJ 0 JRNL AUTH O.RECHKOBLIT,L.MALININA,Y.CHENG,N.E.GEACINTOV,S.BROYDE, JRNL AUTH 2 D.J.PATEL JRNL TITL IMPACT OF CONFORMATIONAL HETEROGENEITY OF OXOG LESIONS AND JRNL TITL 2 THEIR PAIRING PARTNERS ON BYPASS FIDELITY BY Y FAMILY JRNL TITL 3 POLYMERASES. JRNL REF STRUCTURE V. 17 725 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19446528 JRNL DOI 10.1016/J.STR.2009.03.011 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 38605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1180 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.472 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7029 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9700 ; 1.601 ; 2.222 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 5.191 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;31.895 ;23.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;16.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1103 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4705 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4324 ; 0.243 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4742 ; 0.335 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 746 ; 0.255 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.184 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 122 ; 0.236 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.332 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3482 ; 0.617 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5529 ; 0.836 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4401 ; 1.402 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4171 ; 1.835 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3022 1.3516 2.6298 REMARK 3 T TENSOR REMARK 3 T11: -0.3253 T22: -0.3027 REMARK 3 T33: -0.2169 T12: -0.0054 REMARK 3 T13: 0.0349 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.4061 L22: 2.3432 REMARK 3 L33: 1.6964 L12: -0.9851 REMARK 3 L13: -0.2138 L23: 0.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: -0.3154 S13: -0.1499 REMARK 3 S21: 0.1960 S22: 0.1309 S23: 0.0620 REMARK 3 S31: -0.0753 S32: 0.1774 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8513 55.7932 38.1771 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0414 REMARK 3 T33: -0.2689 T12: -0.0998 REMARK 3 T13: 0.0304 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 3.9334 L22: 1.5622 REMARK 3 L33: 2.9038 L12: -0.1365 REMARK 3 L13: -0.4382 L23: -1.1906 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.6451 S13: -0.0844 REMARK 3 S21: 0.5037 S22: -0.0484 S23: 0.1225 REMARK 3 S31: -0.4026 S32: 0.0765 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 901 E 918 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4268 -7.0623 12.1054 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.2398 REMARK 3 T33: 0.0120 T12: 0.1296 REMARK 3 T13: -0.0935 T23: 0.1179 REMARK 3 L TENSOR REMARK 3 L11: 0.8412 L22: 2.4379 REMARK 3 L33: 2.3517 L12: 0.1551 REMARK 3 L13: -1.3366 L23: 0.4944 REMARK 3 S TENSOR REMARK 3 S11: -0.3812 S12: -0.8919 S13: -0.3688 REMARK 3 S21: 0.7634 S22: 0.3207 S23: -0.1500 REMARK 3 S31: -0.0938 S32: 0.5279 S33: 0.0605 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1802 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1918 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1830 46.0957 45.3566 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.6431 REMARK 3 T33: 0.2167 T12: 0.0358 REMARK 3 T13: -0.2095 T23: 0.2473 REMARK 3 L TENSOR REMARK 3 L11: 5.4159 L22: 6.1565 REMARK 3 L33: 5.1614 L12: -1.7647 REMARK 3 L13: -3.7860 L23: 1.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.4963 S12: -1.5869 S13: -0.7870 REMARK 3 S21: 1.2143 S22: 0.1872 S23: -1.0173 REMARK 3 S31: 0.3375 S32: 1.2087 S33: 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : 6144 X 6144 PIXEL ELEMENTS WITH REMARK 200 AN EFFECTIVE PIXEL SIZE LESS REMARK 200 THAN 60X60 MICRON AND RESOLUTION REMARK 200 OF ORDER 90X90 MICRON REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3GII REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 100 MM CALCIUM ACETATE, REMARK 280 10% PEG 4000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.70450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1904 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC E 910 O3' DC E 910 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 805 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT D 808 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG D 813 C3' - O3' - P ANGL. DEV. = 11.5 DEGREES REMARK 500 2DA D 814 O3' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC E 901 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC E 907 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC E 907 C1' - O4' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA E 909 O5' - C5' - C4' ANGL. DEV. = -8.1 DEGREES REMARK 500 DT E 913 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT E 913 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC E 915 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC J1907 O5' - C5' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J1914 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 59.55 19.59 REMARK 500 ALA A 71 163.66 -46.18 REMARK 500 ARG A 77 76.64 -104.34 REMARK 500 ASN A 234 35.31 -148.38 REMARK 500 ASP A 277 87.52 44.22 REMARK 500 LYS A 278 -36.54 84.64 REMARK 500 PRO A 303 -80.86 -56.86 REMARK 500 PRO A 303 -80.76 -56.86 REMARK 500 HIS A 304 174.04 -53.29 REMARK 500 TYR B1010 54.58 23.51 REMARK 500 ASN B1020 82.41 -159.34 REMARK 500 ARG B1036 -113.48 -67.11 REMARK 500 ASN B1047 160.34 -39.95 REMARK 500 LYS B1052 -39.67 -34.72 REMARK 500 VAL B1115 107.35 46.85 REMARK 500 ASP B1117 137.22 154.74 REMARK 500 SER B1145 -170.00 -164.47 REMARK 500 LYS B1159 -72.79 -40.34 REMARK 500 LYS B1252 14.31 -69.46 REMARK 500 ARG B1253 135.51 169.94 REMARK 500 ASP B1277 90.39 43.69 REMARK 500 LYS B1278 -41.28 84.32 REMARK 500 ASP B1292 34.17 -77.13 REMARK 500 LEU B1323 16.73 -69.74 REMARK 500 GLU B1324 -40.84 -134.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 GLU A 106 OE2 77.7 REMARK 620 3 HOH A 501 O 82.0 58.3 REMARK 620 4 HOH D 502 O 109.1 158.4 101.6 REMARK 620 5 HOH D 717 O 69.2 101.0 148.1 100.5 REMARK 620 6 2DA D 814 OP1 136.8 101.1 134.6 87.8 68.7 REMARK 620 7 2DA D 814 OP2 147.6 124.8 128.7 59.6 82.6 28.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 103.8 REMARK 620 3 ASP A 105 OD2 72.5 83.7 REMARK 620 4 DGT A 414 O1G 105.5 112.9 162.9 REMARK 620 5 DGT A 414 O1B 161.4 84.4 92.3 85.9 REMARK 620 6 DGT A 414 O2A 87.4 158.3 82.1 80.9 79.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 88.2 REMARK 620 3 HOH A 512 O 93.8 170.8 REMARK 620 4 HOH D 514 O 172.4 92.7 86.6 REMARK 620 5 HOH D 516 O 83.1 73.4 115.8 89.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 ASP B1007 OD1 43.9 REMARK 620 3 GLU B1106 OE2 101.0 105.5 REMARK 620 4 HOH B1501 O 74.4 98.4 139.5 REMARK 620 5 HOH B1502 O 66.0 109.2 75.2 66.1 REMARK 620 6 2DA H1814 OP1 129.0 170.2 67.5 84.1 63.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 93.7 REMARK 620 3 ASP B1105 OD2 83.8 85.0 REMARK 620 4 DGT B1414 O1G 108.6 116.8 153.2 REMARK 620 5 DGT B1414 O1B 164.1 92.3 82.1 81.6 REMARK 620 6 DGT B1414 O2A 106.5 157.5 87.4 66.5 65.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 VAL B1183 O 86.1 REMARK 620 3 ILE B1186 O 65.8 82.0 REMARK 620 4 HOH B1515 O 45.8 120.8 51.2 REMARK 620 5 HOH B1516 O 100.2 107.8 162.8 112.1 REMARK 620 6 DG H1813 OP1 135.6 91.5 69.9 101.5 122.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 PRE-INSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED DPO4 POST-INSERTION BINARY COMPLEX REMARK 900 RELATED ID: 3GII RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH DISORDERED A OPPOSITE AN OXOG REMARK 900 IN ANTI CONFORMATION REMARK 900 RELATED ID: 3GIK RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH THE OXOG(ANTI)-C(ANTI) PAIR REMARK 900 RELATED ID: 3GIL RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-T(ANTI) PAIR REMARK 900 RELATED ID: 3GIM RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-G(SYN) PAIR DBREF 3GIJ A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3GIJ D 802 814 PDB 3GIJ 3GIJ 802 814 DBREF 3GIJ E 901 918 PDB 3GIJ 3GIJ 901 918 DBREF 3GIJ B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3GIJ H 1802 1814 PDB 3GIJ 3GIJ 1802 1814 DBREF 3GIJ J 1901 1918 PDB 3GIJ 3GIJ 1901 1918 SEQADV 3GIJ GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3GIJ GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 E 18 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 E 18 DC DC DA DA DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 J 18 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 J 18 DC DC DA DA DC MODRES 3GIJ 2DA D 814 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE MODRES 3GIJ 8OG E 906 DG MODRES 3GIJ 2DA H 1814 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE MODRES 3GIJ 8OG J 1906 DG HET 2DA D 814 40 HET 8OG E 906 46 HET 2DA H1814 20 HET 8OG J1906 23 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM 2DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 2DA 2(C10 H14 N5 O5 P) FORMUL 3 8OG 2(C10 H14 N5 O8 P) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 15 HOH *244(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 GLU A 94 1 18 HELIX 5 5 ASP A 117 LYS A 137 1 21 HELIX 6 6 ASN A 147 LYS A 159 1 13 HELIX 7 7 ASP A 167 LEU A 178 1 12 HELIX 8 8 ASP A 179 VAL A 183 5 5 HELIX 9 9 GLY A 187 LEU A 197 1 11 HELIX 10 10 LYS A 201 LEU A 206 5 6 HELIX 11 11 GLU A 209 GLY A 218 1 10 HELIX 12 12 GLY A 218 ARG A 230 1 13 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 TYR B 1010 LEU B 1019 1 10 HELIX 16 16 ASN B 1020 LYS B 1024 5 5 HELIX 17 17 ASN B 1047 LYS B 1052 1 6 HELIX 18 18 PRO B 1060 LEU B 1068 1 9 HELIX 19 19 ARG B 1077 LEU B 1092 1 16 HELIX 20 20 ARG B 1119 LYS B 1137 1 19 HELIX 21 21 ASN B 1147 ALA B 1158 1 12 HELIX 22 22 ASP B 1167 LEU B 1178 1 12 HELIX 23 23 ASP B 1179 VAL B 1183 5 5 HELIX 24 24 GLY B 1187 GLY B 1198 1 12 HELIX 25 25 LEU B 1202 LEU B 1206 5 5 HELIX 26 26 GLU B 1209 GLY B 1218 1 10 HELIX 27 27 GLY B 1218 ARG B 1230 1 13 HELIX 28 28 ASN B 1257 ASP B 1277 1 21 HELIX 29 29 SER B 1307 ASP B 1326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O THR A 45 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ILE B1111 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 ILE B1002 PHE B1008 -1 N VAL B1006 O ALA B1107 SHEET 4 D 5 VAL B1140 SER B1145 -1 O SER B1145 N VAL B1003 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N VAL B1142 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O THR B1045 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1332 SHEET 4 F 4 ILE B1295 THR B1301 -1 O VAL B1296 N ALA B1288 LINK O3' DG D 813 P A2DA D 814 1555 1555 1.58 LINK O3' DG D 813 P B2DA D 814 1555 1555 1.64 LINK O3' DC E 905 P A8OG E 906 1555 1555 1.58 LINK O3' DC E 905 P B8OG E 906 1555 1555 1.60 LINK O3'A8OG E 906 P DC E 907 1555 1555 1.59 LINK O3'B8OG E 906 P DC E 907 1555 1555 1.60 LINK O3' DG H1813 P 2DA H1814 1555 1555 1.63 LINK O3' DC J1905 P 8OG J1906 1555 1555 1.61 LINK O3' 8OG J1906 P DC J1907 1555 1555 1.60 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.33 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.32 LINK O PHE A 8 CA CA A 416 1555 1555 2.27 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.29 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.34 LINK O ALA A 181 CA CA A 417 1555 1555 2.30 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.34 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.32 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.32 LINK CA CA A 415 O HOH A 501 1555 1555 2.50 LINK CA CA A 415 O HOH D 502 1555 1555 2.35 LINK CA CA A 415 O HOH D 717 1555 1555 2.43 LINK CA CA A 415 OP1A2DA D 814 1555 1555 2.32 LINK CA CA A 415 OP2B2DA D 814 1555 1555 2.35 LINK CA CA A 417 O HOH A 512 1555 1555 2.36 LINK CA CA A 417 O HOH D 514 1555 1555 2.47 LINK CA CA A 417 O HOH D 516 1555 1555 2.42 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.32 LINK OD1 ASP B1007 CA CA B1415 1555 1555 3.15 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.32 LINK O PHE B1008 CA CA B1416 1555 1555 2.31 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.31 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.90 LINK O VAL B1183 CA CA B1417 1555 1555 2.70 LINK O ILE B1186 CA CA B1417 1555 1555 2.79 LINK O1G DGT B1414 CA CA B1416 1555 1555 2.33 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.32 LINK CA CA B1415 O HOH B1501 1555 1555 2.12 LINK CA CA B1415 O HOH B1502 1555 1555 2.82 LINK CA CA B1415 OP1 2DA H1814 1555 1555 2.96 LINK CA CA B1417 O HOH B1515 1555 1555 2.80 LINK CA CA B1417 O HOH B1516 1555 1555 2.51 LINK CA CA B1417 OP1 DG H1813 1555 1555 2.32 CISPEP 1 LYS A 159 PRO A 160 0 -1.04 SITE 1 AC1 23 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 23 TYR A 12 VAL A 32 ALA A 44 THR A 45 SITE 3 AC1 23 TYR A 48 ARG A 51 ASP A 105 LYS A 159 SITE 4 AC1 23 CA A 415 CA A 416 HOH A 501 HOH A 511 SITE 5 AC1 23 HOH A 640 HOH A 721 HOH A 731 HOH D 502 SITE 6 AC1 23 2DA D 814 DC E 905 8OG E 906 SITE 1 AC2 8 ASP A 7 GLU A 106 LYS A 159 DGT A 414 SITE 2 AC2 8 HOH A 501 HOH D 502 HOH D 717 2DA D 814 SITE 1 AC3 4 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 512 HOH D 514 SITE 2 AC4 5 HOH D 516 SITE 1 AC5 19 HOH B 624 PHE B1008 ASP B1009 TYR B1010 SITE 2 AC5 19 PHE B1011 TYR B1012 VAL B1032 ALA B1044 SITE 3 AC5 19 THR B1045 TYR B1048 ARG B1051 ALA B1057 SITE 4 AC5 19 ASP B1105 LYS B1159 CA B1415 CA B1416 SITE 5 AC5 19 2DA H1814 DC J1905 8OG J1906 SITE 1 AC6 6 ASP B1007 GLU B1106 DGT B1414 HOH B1501 SITE 2 AC6 6 HOH B1502 2DA H1814 SITE 1 AC7 4 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 1 AC8 6 ALA B1181 VAL B1183 ILE B1186 HOH B1515 SITE 2 AC8 6 HOH B1516 DG H1813 CRYST1 51.264 107.409 97.867 90.00 100.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019507 0.000000 0.003628 0.00000 SCALE2 0.000000 0.009310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000