PDB Short entry for 3GKH HEADER TRANSPORT PROTEIN 10-MAR-09 3GKH TITLE NPC1(NTD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIEMANN-PICK C1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS CHOLESTEROL, CHOLESTEROL TRANSFER, DISEASE MUTATION, ENDOSOME, KEYWDS 2 GLYCOPROTEIN, LYSOSOME, MEMBRANE, TRANSMEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KWON REVDAT 4 20-OCT-21 3GKH 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3GKH 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3GKH 1 VERSN REVDAT 1 14-JUL-09 3GKH 0 JRNL AUTH H.J.KWON,L.ABI-MOSLEH,M.L.WANG,J.DEISENHOFER,J.L.GOLDSTEIN, JRNL AUTH 2 M.S.BROWN,R.E.INFANTE JRNL TITL STRUCTURE OF N-TERMINAL DOMAIN OF NPC1 REVEALS DISTINCT JRNL TITL 2 SUBDOMAINS FOR BINDING AND TRANSFER OF CHOLESTEROL. JRNL REF CELL(CAMBRIDGE,MASS.) V. 137 1213 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19563754 JRNL DOI 10.1016/J.CELL.2009.03.049 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 17455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1857 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2531 ; 1.374 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 5.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;39.769 ;25.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;15.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;16.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1419 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 790 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1298 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 0.821 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1822 ; 1.375 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 791 ; 2.358 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 709 ; 3.612 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 128 REMARK 3 RESIDUE RANGE : A 139 A 227 REMARK 3 RESIDUE RANGE : A 1 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1388 -32.7046 4.4414 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: -0.0712 REMARK 3 T33: -0.0513 T12: 0.0010 REMARK 3 T13: -0.0050 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.8460 L22: 1.0405 REMARK 3 L33: 1.5559 L12: -0.2936 REMARK 3 L13: -0.0950 L23: 0.3063 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0329 S13: -0.1405 REMARK 3 S21: 0.0228 S22: -0.0055 S23: 0.1465 REMARK 3 S31: 0.0855 S32: -0.0908 S33: 0.0419 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2273 -43.8992 -14.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.0745 REMARK 3 T33: -0.0157 T12: -0.0209 REMARK 3 T13: -0.0470 T23: -0.1452 REMARK 3 L TENSOR REMARK 3 L11: 3.1476 L22: 10.4524 REMARK 3 L33: 4.5505 L12: 1.2301 REMARK 3 L13: -2.5770 L23: -5.2785 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.6277 S13: -0.4698 REMARK 3 S21: -0.8013 S22: 0.1020 S23: 0.0605 REMARK 3 S31: 0.7991 S32: -0.3222 S33: -0.0333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -48.9618 -22.9656 23.8576 REMARK 3 T TENSOR REMARK 3 T11: -0.0582 T22: 0.4712 REMARK 3 T33: 0.0159 T12: 0.0605 REMARK 3 T13: 0.0399 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 36.3433 L22: 2.4491 REMARK 3 L33: 22.6776 L12: 0.9170 REMARK 3 L13: -9.5778 L23: -6.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.9805 S13: -0.1196 REMARK 3 S21: -0.1064 S22: 0.9302 S23: 0.2164 REMARK 3 S31: -0.0885 S32: -1.2837 S33: -0.9679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 100 MM MES ACID, 30 MM REMARK 280 GLYCINE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.54800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.09600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.54800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.09600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 248 REMARK 465 PRO A 249 REMARK 465 LYS A 250 REMARK 465 PRO A 251 REMARK 465 GLN A 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 28 116.30 -164.73 REMARK 500 CYS A 31 -122.64 -119.68 REMARK 500 CYS A 63 58.66 -140.66 REMARK 500 ASN A 135 16.52 54.44 REMARK 500 SER A 167 50.72 38.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GKI RELATED DB: PDB REMARK 900 RELATED ID: 3GKJ RELATED DB: PDB DBREF 3GKH A 23 252 UNP O15118 NPC1_HUMAN 23 252 SEQADV 3GKH GLY A 21 UNP O15118 EXPRESSION TAG SEQADV 3GKH ALA A 22 UNP O15118 EXPRESSION TAG SEQADV 3GKH GLN A 70 UNP O15118 ASN 70 ENGINEERED MUTATION SEQADV 3GKH GLN A 122 UNP O15118 ASN 122 ENGINEERED MUTATION SEQADV 3GKH GLN A 185 UNP O15118 ASN 185 ENGINEERED MUTATION SEQRES 1 A 232 GLY ALA GLN SER CYS VAL TRP TYR GLY GLU CYS GLY ILE SEQRES 2 A 232 ALA TYR GLY ASP LYS ARG TYR ASN CYS GLU TYR SER GLY SEQRES 3 A 232 PRO PRO LYS PRO LEU PRO LYS ASP GLY TYR ASP LEU VAL SEQRES 4 A 232 GLN GLU LEU CYS PRO GLY PHE PHE PHE GLY GLN VAL SER SEQRES 5 A 232 LEU CYS CYS ASP VAL ARG GLN LEU GLN THR LEU LYS ASP SEQRES 6 A 232 ASN LEU GLN LEU PRO LEU GLN PHE LEU SER ARG CYS PRO SEQRES 7 A 232 SER CYS PHE TYR ASN LEU LEU ASN LEU PHE CYS GLU LEU SEQRES 8 A 232 THR CYS SER PRO ARG GLN SER GLN PHE LEU GLN VAL THR SEQRES 9 A 232 ALA THR GLU ASP TYR VAL ASP PRO VAL THR ASN GLN THR SEQRES 10 A 232 LYS THR ASN VAL LYS GLU LEU GLN TYR TYR VAL GLY GLN SEQRES 11 A 232 SER PHE ALA ASN ALA MET TYR ASN ALA CYS ARG ASP VAL SEQRES 12 A 232 GLU ALA PRO SER SER ASN ASP LYS ALA LEU GLY LEU LEU SEQRES 13 A 232 CYS GLY LYS ASP ALA ASP ALA CYS GLN ALA THR ASN TRP SEQRES 14 A 232 ILE GLU TYR MET PHE ASN LYS ASP ASN GLY GLN ALA PRO SEQRES 15 A 232 PHE THR ILE THR PRO VAL PHE SER ASP PHE PRO VAL HIS SEQRES 16 A 232 GLY MET GLU PRO MET ASN ASN ALA THR LYS GLY CYS ASP SEQRES 17 A 232 GLU SER VAL ASP GLU VAL THR ALA PRO CYS SER CYS GLN SEQRES 18 A 232 ASP CYS SER ILE VAL CYS GLY PRO LYS PRO GLN MODRES 3GKH ASN A 158 ASN GLYCOSYLATION SITE MODRES 3GKH ASN A 222 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 3 14 HET GOL A 253 6 HET GOL A 254 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *95(H2 O) HELIX 1 1 PRO A 52 ASP A 54 5 3 HELIX 2 2 GLY A 55 CYS A 63 1 9 HELIX 3 3 PRO A 64 PHE A 67 5 4 HELIX 4 4 ASP A 76 LEU A 87 1 12 HELIX 5 5 LEU A 87 SER A 95 1 9 HELIX 6 6 CYS A 97 SER A 114 1 18 HELIX 7 7 ARG A 116 GLN A 119 5 4 HELIX 8 8 GLY A 149 ARG A 161 1 13 HELIX 9 9 ALA A 172 CYS A 177 1 6 HELIX 10 10 ASP A 180 CYS A 184 5 5 HELIX 11 11 GLN A 185 PHE A 194 1 10 HELIX 12 12 ASN A 195 GLY A 199 5 5 HELIX 13 13 SER A 239 CYS A 247 5 9 SHEET 1 A 2 TRP A 27 TYR A 35 0 SHEET 2 A 2 LYS A 38 GLU A 43 -1 O TYR A 40 N CYS A 31 SHEET 1 B 2 LYS A 49 PRO A 50 0 SHEET 2 B 2 SER A 72 LEU A 73 -1 O LEU A 73 N LYS A 49 SHEET 1 C 3 LEU A 121 VAL A 130 0 SHEET 2 C 3 THR A 137 VAL A 148 -1 O LYS A 138 N TYR A 129 SHEET 3 C 3 THR A 204 PHE A 209 1 O VAL A 208 N VAL A 148 SSBOND 1 CYS A 25 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 31 CYS A 42 1555 1555 2.04 SSBOND 3 CYS A 63 CYS A 109 1555 1555 2.04 SSBOND 4 CYS A 75 CYS A 113 1555 1555 2.07 SSBOND 5 CYS A 97 CYS A 238 1555 1555 2.04 SSBOND 6 CYS A 100 CYS A 160 1555 1555 2.02 SSBOND 7 CYS A 177 CYS A 184 1555 1555 2.07 SSBOND 8 CYS A 227 CYS A 243 1555 1555 2.07 SSBOND 9 CYS A 240 CYS A 247 1555 1555 2.03 LINK C1 NAG A 3 ND2 ASN A 158 1555 1555 1.45 LINK ND2 ASN A 222 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 CRYST1 66.181 66.181 82.644 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015110 0.008724 0.000000 0.00000 SCALE2 0.000000 0.017448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012100 0.00000