PDB Short entry for 3GP0 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-MAR-09 3GP0 TITLE CRYSTAL STRUCTURE OF HUMAN MITOGEN ACTIVATED PROTEIN KINASE 11 (P38 TITLE 2 BETA) IN COMPLEX WITH NILOTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK11, MITOGEN-ACTIVATED PROTEIN KINASE P38 BETA, MAP COMPND 5 KINASE P38 BETA, P38B, P38-2, STRESS-ACTIVATED PROTEIN KINASE 2; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK11, PRKM11, SAPK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS MITOGEN-ACTIVATED PROTEIN KINASE 11, P38B, P38BETA, PRKM11, SAPK2, KEYWDS 2 SAPK2B, STRESS-ACTIVATED PROTEIN KINASE-2, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 4 PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 5 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,A.BARR,O.FEDOROV,T.KEATES,M.SOUNDARARAJAN,J.ELKINS, AUTHOR 2 E.SALAH,N.BURGESS-BROWN,E.UGOCHUKWU,A.C.W.PIKE,J.MUNIZ,A.ROOS, AUTHOR 3 A.CHAIKUAD,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, AUTHOR 4 C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 06-SEP-23 3GP0 1 REMARK SEQADV REVDAT 2 13-JUL-11 3GP0 1 VERSN REVDAT 1 07-APR-09 3GP0 0 JRNL AUTH P.FILIPPAKOPOULOS,A.BARR,O.FEDOROV,T.KEATES,M.SOUNDARARAJAN, JRNL AUTH 2 J.ELKINS,E.SALAH,N.BURGESS-BROWN,E.UGOCHUKWU,A.C.W.PIKE, JRNL AUTH 3 J.MUNIZ,A.ROOS,A.CHAIKUAD,F.VON DELFT,C.H.ARROWSMITH, JRNL AUTH 4 A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP, JRNL AUTH 5 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOGEN ACTIVATED PROTEIN KINASE JRNL TITL 2 11 (P38 BETA) IN COMPLEX WITH NILOTINIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.967 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2779 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3776 ; 1.527 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 5.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.785 ;23.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;14.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2103 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 3.261 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2706 ; 4.436 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 6.810 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 8.286 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0300 62.6460 34.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.1182 REMARK 3 T33: 0.0800 T12: 0.0324 REMARK 3 T13: 0.0051 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.0400 L22: 5.0151 REMARK 3 L33: 2.2048 L12: 2.5583 REMARK 3 L13: 1.5090 L23: 2.4848 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.1285 S13: 0.2353 REMARK 3 S21: 0.0332 S22: 0.0238 S23: 0.3580 REMARK 3 S31: -0.0722 S32: -0.2153 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7280 61.5140 21.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0264 REMARK 3 T33: 0.0835 T12: -0.0270 REMARK 3 T13: 0.0159 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.1224 L22: 0.4914 REMARK 3 L33: 4.2048 L12: 0.0889 REMARK 3 L13: -2.1721 L23: -0.3311 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: -0.1718 S13: 0.2000 REMARK 3 S21: 0.1731 S22: -0.0363 S23: 0.0680 REMARK 3 S31: -0.2088 S32: 0.1505 S33: -0.1269 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4770 59.9960 0.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0224 REMARK 3 T33: 0.0309 T12: -0.0079 REMARK 3 T13: 0.0097 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.7883 L22: 1.3827 REMARK 3 L33: 1.4637 L12: -0.1085 REMARK 3 L13: 0.8089 L23: -0.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.2156 S13: -0.1834 REMARK 3 S21: -0.1135 S22: 0.0359 S23: 0.1088 REMARK 3 S31: 0.1087 S32: -0.0512 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3790 45.0490 30.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.0743 REMARK 3 T33: 0.1558 T12: -0.0203 REMARK 3 T13: -0.0321 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 2.9699 L22: 4.2051 REMARK 3 L33: 3.9834 L12: -0.3226 REMARK 3 L13: -0.9098 L23: 0.7453 REMARK 3 S TENSOR REMARK 3 S11: -0.1494 S12: 0.1123 S13: 0.0478 REMARK 3 S21: -0.1127 S22: -0.0170 S23: 0.2377 REMARK 3 S31: 0.0946 S32: -0.2413 S33: 0.1664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3GP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9253 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.11700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : 0.65400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE COMPRISING OF 2GTN, 1P38, 1LEZ, 1BMK, REMARK 200 3FC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 0.1M CITRATE PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 TYR A 35 REMARK 465 GLY A 36 REMARK 465 LEU A 171 REMARK 465 ALA A 172 REMARK 465 ARG A 173 REMARK 465 GLN A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 THR A 180 REMARK 465 LYS A 349 REMARK 465 PRO A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 14 CG OD1 ND2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 ARG A 57 CD NE CZ NH1 NH2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 MET A 179 CG SD CE REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 HIS A 254 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 287 CZ NH1 NH2 REMARK 470 GLU A 301 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 73.28 47.92 REMARK 500 LYS A 15 28.59 47.77 REMARK 500 SER A 100 -13.30 -141.49 REMARK 500 ARG A 149 -7.89 78.12 REMARK 500 PHE A 274 55.98 -111.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 352 DBREF 3GP0 A 5 350 UNP Q15759 MK11_HUMAN 5 350 SEQADV 3GP0 SER A 3 UNP Q15759 EXPRESSION TAG SEQADV 3GP0 MET A 4 UNP Q15759 EXPRESSION TAG SEQRES 1 A 348 SER MET ARG ALA GLY PHE TYR ARG GLN GLU LEU ASN LYS SEQRES 2 A 348 THR VAL TRP GLU VAL PRO GLN ARG LEU GLN GLY LEU ARG SEQRES 3 A 348 PRO VAL GLY SER GLY ALA TYR GLY SER VAL CYS SER ALA SEQRES 4 A 348 TYR ASP ALA ARG LEU ARG GLN LYS VAL ALA VAL LYS LYS SEQRES 5 A 348 LEU SER ARG PRO PHE GLN SER LEU ILE HIS ALA ARG ARG SEQRES 6 A 348 THR TYR ARG GLU LEU ARG LEU LEU LYS HIS LEU LYS HIS SEQRES 7 A 348 GLU ASN VAL ILE GLY LEU LEU ASP VAL PHE THR PRO ALA SEQRES 8 A 348 THR SER ILE GLU ASP PHE SER GLU VAL TYR LEU VAL THR SEQRES 9 A 348 THR LEU MET GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS SEQRES 10 A 348 GLN ALA LEU SER ASP GLU HIS VAL GLN PHE LEU VAL TYR SEQRES 11 A 348 GLN LEU LEU ARG GLY LEU LYS TYR ILE HIS SER ALA GLY SEQRES 12 A 348 ILE ILE HIS ARG ASP LEU LYS PRO SER ASN VAL ALA VAL SEQRES 13 A 348 ASN GLU ASP CYS GLU LEU ARG ILE LEU ASP PHE GLY LEU SEQRES 14 A 348 ALA ARG GLN ALA ASP GLU GLU MET THR GLY TYR VAL ALA SEQRES 15 A 348 THR ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN TRP SEQRES 16 A 348 MET HIS TYR ASN GLN THR VAL ASP ILE TRP SER VAL GLY SEQRES 17 A 348 CYS ILE MET ALA GLU LEU LEU GLN GLY LYS ALA LEU PHE SEQRES 18 A 348 PRO GLY SER ASP TYR ILE ASP GLN LEU LYS ARG ILE MET SEQRES 19 A 348 GLU VAL VAL GLY THR PRO SER PRO GLU VAL LEU ALA LYS SEQRES 20 A 348 ILE SER SER GLU HIS ALA ARG THR TYR ILE GLN SER LEU SEQRES 21 A 348 PRO PRO MET PRO GLN LYS ASP LEU SER SER ILE PHE ARG SEQRES 22 A 348 GLY ALA ASN PRO LEU ALA ILE ASP LEU LEU GLY ARG MET SEQRES 23 A 348 LEU VAL LEU ASP SER ASP GLN ARG VAL SER ALA ALA GLU SEQRES 24 A 348 ALA LEU ALA HIS ALA TYR PHE SER GLN TYR HIS ASP PRO SEQRES 25 A 348 GLU ASP GLU PRO GLU ALA GLU PRO TYR ASP GLU SER VAL SEQRES 26 A 348 GLU ALA LYS GLU ARG THR LEU GLU GLU TRP LYS GLU LEU SEQRES 27 A 348 THR TYR GLN GLU VAL LEU SER PHE LYS PRO HET NIL A 1 39 HET EDO A 351 4 HET CL A 352 1 HETNAM NIL NILOTINIB HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN NIL 4-METHYL-N-[3-(4-METHYL-1H-IMIDAZOL-1-YL)-5- HETSYN 2 NIL (TRIFLUOROMETHYL)PHENYL]-3-[(4-PYRIDIN-3-YLPYRIMIDIN- HETSYN 3 NIL 2-YL)AMINO]BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NIL C28 H22 F3 N7 O FORMUL 3 EDO C2 H6 O2 FORMUL 4 CL CL 1- FORMUL 5 HOH *211(H2 O) HELIX 1 1 SER A 61 LEU A 78 1 18 HELIX 2 2 SER A 95 PHE A 99 5 5 HELIX 3 3 LEU A 113 GLN A 120 1 8 HELIX 4 4 SER A 123 ALA A 144 1 22 HELIX 5 5 LYS A 152 SER A 154 5 3 HELIX 6 6 ALA A 184 ARG A 189 5 6 HELIX 7 7 ALA A 190 LEU A 195 1 6 HELIX 8 8 GLN A 202 GLY A 219 1 18 HELIX 9 9 ASP A 227 GLY A 240 1 14 HELIX 10 10 SER A 243 ILE A 250 1 8 HELIX 11 11 ALA A 255 SER A 261 1 7 HELIX 12 12 ASP A 269 PHE A 274 1 6 HELIX 13 13 ASN A 278 GLY A 286 1 9 HELIX 14 14 ASP A 292 ARG A 296 5 5 HELIX 15 15 SER A 298 LEU A 303 1 6 HELIX 16 16 ALA A 304 SER A 309 5 6 HELIX 17 17 ASP A 313 GLU A 317 5 5 HELIX 18 18 GLU A 325 LYS A 330 1 6 HELIX 19 19 THR A 333 PHE A 348 1 16 SHEET 1 A 2 PHE A 8 GLU A 12 0 SHEET 2 A 2 VAL A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 B 5 LEU A 24 PRO A 29 0 SHEET 2 B 5 VAL A 38 ASP A 43 -1 O SER A 40 N ARG A 28 SHEET 3 B 5 GLN A 48 LYS A 54 -1 O VAL A 52 N CYS A 39 SHEET 4 B 5 TYR A 103 THR A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 B 5 LEU A 86 PHE A 90 -1 N LEU A 87 O VAL A 105 SHEET 1 C 3 ALA A 111 ASP A 112 0 SHEET 2 C 3 VAL A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 C 3 LEU A 164 ILE A 166 -1 O ARG A 165 N ALA A 157 CISPEP 1 VAL A 30 GLY A 31 0 -3.37 SITE 1 AC1 13 ALA A 51 LYS A 53 ARG A 67 GLU A 71 SITE 2 AC1 13 VAL A 83 ILE A 84 THR A 106 MET A 109 SITE 3 AC1 13 HIS A 148 LEU A 167 ASP A 168 PHE A 169 SITE 4 AC1 13 HOH A 441 SITE 1 AC2 6 GLN A 22 GLN A 25 ARG A 73 ASP A 324 SITE 2 AC2 6 HOH A 390 HOH A 518 SITE 1 AC3 4 ARG A 23 ARG A 45 ASP A 88 HOH A 542 CRYST1 38.940 60.080 148.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006732 0.00000