PDB Short entry for 3GT5 HEADER ISOMERASE 27-MAR-09 3GT5 TITLE CRYSTAL STRUCTURE OF AN N-ACETYLGLUCOSAMINE 2-EPIMERASE FAMILY PROTEIN TITLE 2 FROM XYLELLA FASTIDIOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE 2-EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 11-401; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA; SOURCE 3 ORGANISM_TAXID: 405441; SOURCE 4 STRAIN: M23; SOURCE 5 GENE: XFASM23_1239; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, ISOMERASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,R.ROMERO,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3GT5 1 REMARK REVDAT 5 10-FEB-21 3GT5 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 21-NOV-18 3GT5 1 AUTHOR REVDAT 3 01-NOV-17 3GT5 1 REMARK REVDAT 2 13-JUL-11 3GT5 1 VERSN REVDAT 1 14-APR-09 3GT5 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IIZUKA,R.ROMERO,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN N-ACETYLGLUCOSAMINE 2-EPIMERASE JRNL TITL 2 FAMILY PROTEIN FROM XYLELLA FASTIDIOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.05000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3364 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2251 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4579 ; 1.445 ; 1.897 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5353 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.886 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;30.267 ;22.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;12.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ; 9.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3859 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 833 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 801 ; 0.283 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3094 ; 1.616 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 2.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1482 ; 3.847 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46992 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.421 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 5.5, 25% PEG 3350, REMARK 280 200MM MAGNESIUM CHLORIDE HEXAHYDRATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.20050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.80300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.02600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.80300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.20050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.02600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE ASSEMBLY OF THE BIOLOGICAL UNIT THAT REMARK 300 IS SHOWN IN REMARK 350 IS PUTATIVE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 LYS A 400 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 465 GLY A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 644 2564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 171 30.76 71.55 REMARK 500 ARG A 214 -68.53 -109.77 REMARK 500 ALA A 360 172.17 76.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11262A RELATED DB: TARGETDB DBREF 3GT5 A 11 401 UNP B2I5L9 B2I5L9_XYLF2 11 401 SEQADV 3GT5 MET A 8 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 SER A 9 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 LEU A 10 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 GLU A 402 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 GLY A 403 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 404 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 405 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 406 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 407 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 408 UNP B2I5L9 EXPRESSION TAG SEQADV 3GT5 HIS A 409 UNP B2I5L9 EXPRESSION TAG SEQRES 1 A 402 MET SER LEU ASP PHE ARG SER ALA ASP PHE LEU ARG THR SEQRES 2 A 402 HIS ILE SER ASP THR MET ALA PHE TYR HIS PRO ARG CYS SEQRES 3 A 402 ILE ASP SER ALA GLY GLY PHE PHE HIS TYR PHE ARG ASP SEQRES 4 A 402 ASP GLY SER ILE TYR ASN ALA THR HIS ARG HIS LEU VAL SEQRES 5 A 402 SER SER THR ARG PHE VAL PHE ASN TYR ALA MET ALA TYR SEQRES 6 A 402 LEU GLN PHE GLY THR ALA GLU TYR LEU ASP ALA VAL HIS SEQRES 7 A 402 HIS GLY LEU SER TYR VAL ARG ASP VAL HIS ARG ASN PRO SEQRES 8 A 402 ALA THR GLY GLY TYR ALA TRP THR LEU CYS ASP ASP ARG SEQRES 9 A 402 VAL GLU ASP ASP THR ASN HIS CYS TYR GLY LEU ALA PHE SEQRES 10 A 402 VAL MET LEU ALA TYR SER CYS GLY LEU LYS VAL GLY ILE SEQRES 11 A 402 LYS GLN ALA ARG GLU TRP MET ASP GLU THR TRP CYS LEU SEQRES 12 A 402 LEU GLU ARG HIS PHE TRP ASP ALA GLU TYR GLY LEU TYR SEQRES 13 A 402 LYS ASP GLU ALA ASP ALA GLN TRP ASN PHE THR ARG TYR SEQRES 14 A 402 ARG GLY GLN ASN ALA ASN MET HIS MET CYS GLU ALA MET SEQRES 15 A 402 LEU ALA ALA TYR GLU ALA SER GLY GLU GLN ARG TYR LEU SEQRES 16 A 402 GLU ARG ALA LEU VAL LEU ALA ASP ARG ILE THR ARG ARG SEQRES 17 A 402 GLN ALA ALA LYS ALA ASP GLY LEU VAL TRP GLU HIS TYR SEQRES 18 A 402 ASP MET ARG TRP GLU VAL ASP TRP ASP TYR ASN ARG ASP SEQRES 19 A 402 ASN PRO LYS HIS LEU PHE ARG PRO TRP GLY PHE GLN PRO SEQRES 20 A 402 GLY HIS GLN THR GLU TRP ALA LYS LEU LEU LEU ILE LEU SEQRES 21 A 402 ASP ARG TYR ILE GLU VAL GLU TRP LEU VAL PRO VAL ALA SEQRES 22 A 402 ARG SER LEU PHE ASP VAL ALA VAL ALA ARG SER TRP ASP SEQRES 23 A 402 ALA VAL ARG GLY GLY LEU CYS TYR GLY PHE ALA PRO ASP SEQRES 24 A 402 GLY THR ILE CYS ASP ASP ASP LYS TYR PHE TRP VAL GLN SEQRES 25 A 402 ALA GLU SER LEU ALA ALA ALA ALA LEU LEU ALA THR ARG SEQRES 26 A 402 SER GLY ASP GLU ARG TYR TRP GLN TRP TYR ASP ARG LEU SEQRES 27 A 402 TRP ALA TYR ALA TRP GLN HIS MET VAL ASP HIS ARG TYR SEQRES 28 A 402 GLY ALA TRP TYR ARG LEU LEU ASP GLY ASP ASN ARG LYS SEQRES 29 A 402 TYR ASN ASP GLU LYS SER PRO ALA GLY LYS THR ASP TYR SEQRES 30 A 402 HIS THR MET GLY ALA CYS HIS GLU VAL LEU ASN VAL VAL SEQRES 31 A 402 TRP THR LYS SER GLU GLY HIS HIS HIS HIS HIS HIS HET CL A 500 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *274(H2 O) HELIX 1 1 SER A 14 HIS A 30 1 17 HELIX 2 2 LEU A 58 GLY A 76 1 19 HELIX 3 3 THR A 77 VAL A 94 1 18 HELIX 4 4 CYS A 119 VAL A 135 1 17 HELIX 5 5 GLN A 139 PHE A 155 1 17 HELIX 6 6 GLN A 179 GLY A 197 1 19 HELIX 7 7 GLU A 198 ARG A 214 1 17 HELIX 8 8 ARG A 214 LYS A 219 1 6 HELIX 9 9 GLN A 253 ILE A 271 1 19 HELIX 10 10 TRP A 275 TRP A 292 1 18 HELIX 11 11 PHE A 316 GLY A 334 1 19 HELIX 12 12 ASP A 335 MET A 353 1 19 HELIX 13 13 ASP A 383 ASN A 395 1 13 SHEET 1 A 2 TYR A 43 PHE A 44 0 SHEET 2 A 2 ILE A 50 ASN A 52 -1 O TYR A 51 N TYR A 43 SHEET 1 B 3 HIS A 55 HIS A 57 0 SHEET 2 B 3 THR A 106 CYS A 108 -1 O LEU A 107 N ARG A 56 SHEET 3 B 3 ARG A 111 ASP A 114 -1 O ARG A 111 N CYS A 108 SHEET 1 C 2 ASN A 117 HIS A 118 0 SHEET 2 C 2 GLU A 166 ALA A 167 -1 O ALA A 167 N ASN A 117 SHEET 1 D 2 ARG A 177 GLY A 178 0 SHEET 2 D 2 HIS A 227 TYR A 228 -1 O TYR A 228 N ARG A 177 SHEET 1 E 2 GLY A 302 PHE A 303 0 SHEET 2 E 2 ILE A 309 ASP A 311 -1 O ASP A 311 N GLY A 302 SHEET 1 F 2 LYS A 314 TYR A 315 0 SHEET 2 F 2 LEU A 364 LEU A 365 -1 O LEU A 365 N LYS A 314 CISPEP 1 HIS A 30 PRO A 31 0 2.93 SITE 1 AC1 6 ARG A 63 PHE A 316 THR A 382 ASP A 383 SITE 2 AC1 6 TYR A 384 HIS A 385 CRYST1 58.401 72.052 99.606 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010040 0.00000