PDB Short entry for 3GXB HEADER CELL ADHESION 02-APR-09 3GXB TITLE CRYSTAL STRUCTURE OF VWF A2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ADAMTS13 CLEAVAGE DOMAIN, RESIDUES 1495-1671; COMPND 5 SYNONYM: VWF, VON WILLEBRAND ANTIGEN 2, VON WILLEBRAND ANTIGEN II; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F8VWF, VWF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLEXM KEYWDS VWA-LIKE FOLD, BLOOD COAGULATION, CELL ADHESION, CLEAVAGE ON PAIR OF KEYWDS 2 BASIC RESIDUES, DISEASE MUTATION, DISULFIDE BOND, EXTRACELLULAR KEYWDS 3 MATRIX, GLYCOPROTEIN, HEMOSTASIS, ISOPEPTIDE BOND, SECRETED, VON KEYWDS 4 WILLEBRAND DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.F.ZHOU,T.A.SPRINGER REVDAT 5 06-SEP-23 3GXB 1 HETSYN REVDAT 4 29-JUL-20 3GXB 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3GXB 1 VERSN REVDAT 2 30-JUN-09 3GXB 1 JRNL REVDAT 1 05-MAY-09 3GXB 0 JRNL AUTH Q.ZHANG,Y.F.ZHOU,C.Z.ZHANG,X.ZHANG,C.LU,T.A.SPRINGER JRNL TITL STRUCTURAL SPECIALIZATIONS OF A2, A FORCE-SENSING DOMAIN IN JRNL TITL 2 THE ULTRALARGE VASCULAR PROTEIN VON WILLEBRAND FACTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9226 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19470641 JRNL DOI 10.1073/PNAS.0903679106 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3414 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4698 ; 1.010 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 5.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;31.644 ;24.261 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;13.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2729 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2027 ; 0.315 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3345 ; 0.620 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 1.047 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1336 ; 1.834 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1495 A 1671 6 REMARK 3 1 B 1495 B 1671 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1403 ; 0.36 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1403 ; 0.82 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1495 A 1521 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9890 1.6123 2.6157 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0065 REMARK 3 T33: 0.0083 T12: -0.0005 REMARK 3 T13: -0.0031 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.5206 L22: 1.1445 REMARK 3 L33: 1.2630 L12: -0.4106 REMARK 3 L13: -1.0075 L23: 0.4491 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0369 S13: 0.0629 REMARK 3 S21: -0.0555 S22: -0.0522 S23: 0.0680 REMARK 3 S31: 0.0013 S32: -0.0450 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1522 A 1545 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0265 -1.5029 -3.4873 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.0002 REMARK 3 T33: 0.0018 T12: -0.0005 REMARK 3 T13: 0.0057 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1458 L22: 1.5325 REMARK 3 L33: 2.1238 L12: 0.2759 REMARK 3 L13: -0.7543 L23: 0.3311 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0115 S13: 0.0157 REMARK 3 S21: -0.1600 S22: 0.0115 S23: -0.0384 REMARK 3 S31: 0.0326 S32: 0.0047 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1546 A 1579 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3814 -6.6240 -1.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0105 REMARK 3 T33: 0.0098 T12: -0.0079 REMARK 3 T13: -0.0105 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.9211 L22: 0.9852 REMARK 3 L33: 1.4869 L12: -0.0606 REMARK 3 L13: -0.5623 L23: 0.6181 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0723 S13: -0.0683 REMARK 3 S21: -0.0302 S22: -0.0408 S23: 0.0515 REMARK 3 S31: 0.1282 S32: -0.1179 S33: 0.0274 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1580 A 1597 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2859 -9.2607 5.8373 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0423 REMARK 3 T33: 0.0478 T12: 0.0201 REMARK 3 T13: -0.0198 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.5314 L22: 1.0997 REMARK 3 L33: 3.6457 L12: 0.3493 REMARK 3 L13: -0.5311 L23: -0.4042 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.1360 S13: -0.0317 REMARK 3 S21: 0.0967 S22: -0.0137 S23: -0.1956 REMARK 3 S31: 0.2045 S32: 0.1700 S33: 0.0426 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1598 A 1624 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3439 -0.2509 10.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0824 REMARK 3 T33: 0.0736 T12: 0.0356 REMARK 3 T13: -0.0382 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 0.6599 L22: 0.4519 REMARK 3 L33: 0.8873 L12: 0.2051 REMARK 3 L13: 0.2548 L23: -0.1903 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.0876 S13: 0.0432 REMARK 3 S21: 0.0768 S22: -0.0070 S23: -0.1280 REMARK 3 S31: 0.0564 S32: 0.1395 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1625 A 1654 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0241 9.4110 12.7863 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0300 REMARK 3 T33: 0.0056 T12: -0.0098 REMARK 3 T13: -0.0047 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 4.4086 L22: 1.1950 REMARK 3 L33: 2.0719 L12: -0.1845 REMARK 3 L13: -0.1253 L23: -0.0591 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.2541 S13: 0.1085 REMARK 3 S21: 0.1819 S22: 0.0029 S23: -0.0227 REMARK 3 S31: -0.0476 S32: 0.1719 S33: -0.0384 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1655 A 1671 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3269 12.5776 -0.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0079 REMARK 3 T33: 0.0057 T12: -0.0049 REMARK 3 T13: 0.0018 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 7.7432 L22: 2.7224 REMARK 3 L33: 2.0930 L12: -0.1638 REMARK 3 L13: -0.7388 L23: 0.5937 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: 0.1552 S13: 0.0280 REMARK 3 S21: -0.0660 S22: 0.1055 S23: -0.1172 REMARK 3 S31: 0.0554 S32: 0.0328 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1495 B 1518 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6180 -22.6588 31.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0057 REMARK 3 T33: 0.0086 T12: 0.0104 REMARK 3 T13: -0.0079 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.5829 L22: 1.3052 REMARK 3 L33: 1.5714 L12: 0.9705 REMARK 3 L13: -1.4413 L23: -0.7744 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: -0.0170 S13: 0.0057 REMARK 3 S21: 0.1050 S22: 0.0614 S23: -0.0612 REMARK 3 S31: 0.0643 S32: -0.0302 S33: 0.0572 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1519 B 1528 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3279 -27.6381 33.4053 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0035 REMARK 3 T33: 0.0256 T12: 0.0106 REMARK 3 T13: -0.0368 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 8.5587 L22: 1.7332 REMARK 3 L33: 2.0748 L12: -0.1434 REMARK 3 L13: -2.5658 L23: -1.4458 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.1315 S13: -0.1123 REMARK 3 S21: 0.1805 S22: 0.0202 S23: -0.0534 REMARK 3 S31: -0.0972 S32: 0.0292 S33: 0.0572 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1529 B 1593 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2566 -14.8196 27.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: 0.0064 REMARK 3 T33: 0.0171 T12: 0.0039 REMARK 3 T13: -0.0145 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.2678 L22: 1.4545 REMARK 3 L33: 0.7319 L12: 0.2155 REMARK 3 L13: -0.3065 L23: -0.2264 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.0633 S13: 0.1105 REMARK 3 S21: 0.0604 S22: 0.0452 S23: -0.0641 REMARK 3 S31: -0.0607 S32: 0.0328 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1594 B 1606 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9938 -19.2745 15.4035 REMARK 3 T TENSOR REMARK 3 T11: 0.0680 T22: 0.0633 REMARK 3 T33: 0.0242 T12: -0.0267 REMARK 3 T13: 0.0340 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.9293 L22: 4.9732 REMARK 3 L33: 5.4734 L12: 2.6670 REMARK 3 L13: -2.5745 L23: -1.7762 REMARK 3 S TENSOR REMARK 3 S11: -0.2880 S12: 0.4660 S13: 0.0187 REMARK 3 S21: -0.5076 S22: 0.2941 S23: -0.2419 REMARK 3 S31: 0.1406 S32: -0.0004 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1607 B 1619 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9658 -21.5354 20.8607 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.0905 REMARK 3 T33: 0.0778 T12: -0.0335 REMARK 3 T13: -0.0379 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5814 L22: 1.3800 REMARK 3 L33: 0.4344 L12: 0.5145 REMARK 3 L13: 0.0017 L23: 0.7032 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.3294 S13: -0.0483 REMARK 3 S21: -0.2159 S22: 0.1052 S23: 0.0374 REMARK 3 S31: -0.0658 S32: -0.0145 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1620 B 1654 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5344 -30.0018 21.2775 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0120 REMARK 3 T33: 0.0224 T12: -0.0035 REMARK 3 T13: -0.0042 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.9482 L22: 1.2076 REMARK 3 L33: 2.1383 L12: -0.2970 REMARK 3 L13: -0.0373 L23: 0.4076 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0900 S13: -0.1217 REMARK 3 S21: -0.0467 S22: 0.0081 S23: 0.1058 REMARK 3 S31: -0.0400 S32: -0.0564 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1655 B 1671 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6435 -34.0365 29.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.0086 REMARK 3 T33: 0.0194 T12: 0.0035 REMARK 3 T13: -0.0022 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.0355 L22: 2.7373 REMARK 3 L33: 5.0668 L12: 0.3006 REMARK 3 L13: -1.3281 L23: 0.1946 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.1507 S13: -0.0662 REMARK 3 S21: 0.0317 S22: 0.0094 S23: -0.1799 REMARK 3 S31: 0.0178 S32: 0.1270 S33: 0.0455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 7.2, 0.2 M LITHIUM REMARK 280 SULFATE, 25 % PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1673 REMARK 465 HIS A 1674 REMARK 465 HIS A 1675 REMARK 465 HIS A 1676 REMARK 465 HIS A 1677 REMARK 465 HIS A 1678 REMARK 465 HIS B 1673 REMARK 465 HIS B 1674 REMARK 465 HIS B 1675 REMARK 465 HIS B 1676 REMARK 465 HIS B 1677 REMARK 465 HIS B 1678 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A1672 CA C O CB CG CD REMARK 470 PRO B1672 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B1544 CB TYR B1544 CG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1534 -113.23 -112.94 REMARK 500 SER A1534 -128.56 -134.40 REMARK 500 SER A1543 -100.57 -144.65 REMARK 500 SER A1543 -100.71 -144.65 REMARK 500 THR A1576 76.88 -117.36 REMARK 500 HIS A1588 -69.51 -135.35 REMARK 500 SER B1534 -113.27 -111.60 REMARK 500 SER B1534 -122.44 -138.57 REMARK 500 SER B1543 -99.44 -148.53 REMARK 500 SER B1543 -99.93 -148.53 REMARK 500 THR B1576 76.08 -115.85 REMARK 500 HIS B1588 -68.29 -135.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 3GXB A 1495 1671 UNP P04275 VWF_HUMAN 1495 1671 DBREF 3GXB B 1495 1671 UNP P04275 VWF_HUMAN 1495 1671 SEQADV 3GXB PRO A 1672 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1673 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1674 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1675 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1676 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1677 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS A 1678 UNP P04275 EXPRESSION TAG SEQADV 3GXB PRO B 1672 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1673 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1674 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1675 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1676 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1677 UNP P04275 EXPRESSION TAG SEQADV 3GXB HIS B 1678 UNP P04275 EXPRESSION TAG SEQRES 1 A 184 MET VAL LEU ASP VAL ALA PHE VAL LEU GLU GLY SER ASP SEQRES 2 A 184 LYS ILE GLY GLU ALA ASP PHE ASN ARG SER LYS GLU PHE SEQRES 3 A 184 MET GLU GLU VAL ILE GLN ARG MET ASP VAL GLY GLN ASP SEQRES 4 A 184 SER ILE HIS VAL THR VAL LEU GLN TYR SER TYR MET VAL SEQRES 5 A 184 THR VAL GLU TYR PRO PHE SER GLU ALA GLN SER LYS GLY SEQRES 6 A 184 ASP ILE LEU GLN ARG VAL ARG GLU ILE ARG TYR GLN GLY SEQRES 7 A 184 GLY ASN ARG THR ASN THR GLY LEU ALA LEU ARG TYR LEU SEQRES 8 A 184 SER ASP HIS SER PHE LEU VAL SER GLN GLY ASP ARG GLU SEQRES 9 A 184 GLN ALA PRO ASN LEU VAL TYR MET VAL THR GLY ASN PRO SEQRES 10 A 184 ALA SER ASP GLU ILE LYS ARG LEU PRO GLY ASP ILE GLN SEQRES 11 A 184 VAL VAL PRO ILE GLY VAL GLY PRO ASN ALA ASN VAL GLN SEQRES 12 A 184 GLU LEU GLU ARG ILE GLY TRP PRO ASN ALA PRO ILE LEU SEQRES 13 A 184 ILE GLN ASP PHE GLU THR LEU PRO ARG GLU ALA PRO ASP SEQRES 14 A 184 LEU VAL LEU GLN ARG CYS CYS SER PRO HIS HIS HIS HIS SEQRES 15 A 184 HIS HIS SEQRES 1 B 184 MET VAL LEU ASP VAL ALA PHE VAL LEU GLU GLY SER ASP SEQRES 2 B 184 LYS ILE GLY GLU ALA ASP PHE ASN ARG SER LYS GLU PHE SEQRES 3 B 184 MET GLU GLU VAL ILE GLN ARG MET ASP VAL GLY GLN ASP SEQRES 4 B 184 SER ILE HIS VAL THR VAL LEU GLN TYR SER TYR MET VAL SEQRES 5 B 184 THR VAL GLU TYR PRO PHE SER GLU ALA GLN SER LYS GLY SEQRES 6 B 184 ASP ILE LEU GLN ARG VAL ARG GLU ILE ARG TYR GLN GLY SEQRES 7 B 184 GLY ASN ARG THR ASN THR GLY LEU ALA LEU ARG TYR LEU SEQRES 8 B 184 SER ASP HIS SER PHE LEU VAL SER GLN GLY ASP ARG GLU SEQRES 9 B 184 GLN ALA PRO ASN LEU VAL TYR MET VAL THR GLY ASN PRO SEQRES 10 B 184 ALA SER ASP GLU ILE LYS ARG LEU PRO GLY ASP ILE GLN SEQRES 11 B 184 VAL VAL PRO ILE GLY VAL GLY PRO ASN ALA ASN VAL GLN SEQRES 12 B 184 GLU LEU GLU ARG ILE GLY TRP PRO ASN ALA PRO ILE LEU SEQRES 13 B 184 ILE GLN ASP PHE GLU THR LEU PRO ARG GLU ALA PRO ASP SEQRES 14 B 184 LEU VAL LEU GLN ARG CYS CYS SER PRO HIS HIS HIS HIS SEQRES 15 B 184 HIS HIS MODRES 3GXB ASN A 1515 ASN GLYCOSYLATION SITE MODRES 3GXB ASN A 1574 ASN GLYCOSYLATION SITE MODRES 3GXB ASN B 1515 ASN GLYCOSYLATION SITE MODRES 3GXB ASN B 1574 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG A4574 14 HET NAG B4574 14 HET SO4 B 1 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *405(H2 O) HELIX 1 1 GLY A 1510 ARG A 1527 1 18 HELIX 2 2 SER A 1557 GLU A 1567 1 11 HELIX 3 3 ASN A 1577 HIS A 1588 1 12 HELIX 4 4 SER A 1589 VAL A 1592 5 4 HELIX 5 5 GLN A 1594 ALA A 1600 5 7 HELIX 6 6 ASN A 1635 TRP A 1644 1 10 HELIX 7 7 THR A 1656 CYS A 1670 1 15 HELIX 8 8 ILE B 1509 MET B 1528 1 20 HELIX 9 9 SER B 1557 ILE B 1568 1 12 HELIX 10 10 ASN B 1577 HIS B 1588 1 12 HELIX 11 11 SER B 1589 VAL B 1592 5 4 HELIX 12 12 GLN B 1594 ALA B 1600 5 7 HELIX 13 13 ASN B 1635 TRP B 1644 1 10 HELIX 14 14 THR B 1656 SER B 1671 1 16 SHEET 1 A 6 VAL A1546 TYR A1550 0 SHEET 2 A 6 ILE A1535 TYR A1542 -1 N GLN A1541 O THR A1547 SHEET 3 A 6 LEU A1497 GLU A1504 1 N VAL A1499 O HIS A1536 SHEET 4 A 6 ASN A1602 THR A1608 1 O TYR A1605 N ALA A1500 SHEET 5 A 6 ILE A1623 VAL A1630 1 O VAL A1626 N VAL A1604 SHEET 6 A 6 ILE A1649 ILE A1651 1 O ILE A1649 N PRO A1627 SHEET 1 B 6 VAL B1546 TYR B1550 0 SHEET 2 B 6 ILE B1535 TYR B1542 -1 N GLN B1541 O THR B1547 SHEET 3 B 6 LEU B1497 GLU B1504 1 N LEU B1497 O HIS B1536 SHEET 4 B 6 ASN B1602 THR B1608 1 O VAL B1607 N VAL B1502 SHEET 5 B 6 ILE B1623 VAL B1630 1 O VAL B1626 N VAL B1604 SHEET 6 B 6 ILE B1649 ILE B1651 1 O ILE B1649 N PRO B1627 SSBOND 1 CYS A 1669 CYS A 1670 1555 1555 2.05 SSBOND 2 CYS B 1669 CYS B 1670 1555 1555 2.04 LINK ND2 ASN A1515 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A1574 C1 NAG A4574 1555 1555 1.44 LINK ND2 ASN B1515 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B1574 C1 NAG B4574 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CISPEP 1 TRP A 1644 PRO A 1645 0 3.20 CISPEP 2 TRP A 1644 PRO A 1645 0 7.22 CISPEP 3 TRP B 1644 PRO B 1645 0 8.46 CRYST1 55.110 60.810 56.350 90.00 99.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018146 0.000000 0.002903 0.00000 SCALE2 0.000000 0.016445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017972 0.00000