PDB Short entry for 3GZC HEADER LYASE 07-APR-09 3GZC TITLE STRUCTURE OF HUMAN SELENOCYSTEINE LYASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENOCYSTEINE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 8-445; COMPND 5 SYNONYM: HSCL; COMPND 6 EC: 4.4.1.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCL, SCLY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS SCLY, SELENOCYSTEINE, LYASE, HUMAN, PYRIDOXAL-5'-PHOSPHATE, PLP, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PYRIDOXAL KEYWDS 3 PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.COLLINS,M.HOGBOM,C.ARROWSMITH,H.BERGLUND,A.EDWARDS,M.EHN,S.FLODIN, AUTHOR 2 A.FLORES,S.GRASLUND,B.M.HALLBERG,M.HAMMARSTROM,T.KARLBERG, AUTHOR 3 T.KOTENYOVA,P.NILSSON-EHLE,P.NORDLUND,T.NYMAN,D.OGG,C.PERSSON, AUTHOR 4 J.SAGEMARK,P.STENMARK,M.SUNDSTROM,A.G.THORSELL,J.UPPENBERG,S.VAN DEN AUTHOR 5 BERG,J.WEIGELT,L.HOLMBERG-SCHIAVONE,H.SCHULER,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 4 01-NOV-23 3GZC 1 REMARK SEQADV LINK REVDAT 3 13-JUN-12 3GZC 1 JRNL REVDAT 2 13-JUL-11 3GZC 1 VERSN REVDAT 1 28-APR-09 3GZC 0 SPRSDE 28-APR-09 3GZC 2HDY JRNL AUTH R.COLLINS,A.L.JOHANSSON,T.KARLBERG,N.MARKOVA,S.VAN DEN BERG, JRNL AUTH 2 K.OLESEN,M.HAMMARSTROM,A.FLORES,H.SCHULER,L.H.SCHIAVONE, JRNL AUTH 3 P.BRZEZINSKI,E.S.ARNER,M.HOGBOM JRNL TITL BIOCHEMICAL DISCRIMINATION BETWEEN SELENIUM AND SULFUR 1: A JRNL TITL 2 SINGLE RESIDUE PROVIDES SELENIUM SPECIFICITY TO HUMAN JRNL TITL 3 SELENOCYSTEINE LYASE. JRNL REF PLOS ONE V. 7 30581 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22295093 JRNL DOI 10.1371/JOURNAL.PONE.0030581 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6351 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4288 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8622 ; 1.698 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10461 ; 1.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 801 ; 6.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;33.440 ;23.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1056 ;18.043 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;20.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 975 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7099 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1227 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1351 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4528 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2983 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3340 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 395 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5138 ; 1.121 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1622 ; 0.216 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6472 ; 1.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2617 ; 2.420 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2150 ; 3.416 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0230 -11.9470 17.1020 REMARK 3 T TENSOR REMARK 3 T11: -0.1868 T22: -0.1379 REMARK 3 T33: -0.1147 T12: -0.0241 REMARK 3 T13: 0.0188 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.7773 L22: 0.9896 REMARK 3 L33: 1.3384 L12: 0.0567 REMARK 3 L13: 0.1141 L23: -0.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0023 S13: 0.1079 REMARK 3 S21: -0.0340 S22: -0.0275 S23: 0.0465 REMARK 3 S31: -0.0901 S32: 0.0497 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 351 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7730 -32.2250 5.1560 REMARK 3 T TENSOR REMARK 3 T11: -0.0568 T22: -0.1053 REMARK 3 T33: -0.0814 T12: -0.0483 REMARK 3 T13: -0.0480 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.6729 L22: 2.0524 REMARK 3 L33: 1.3566 L12: -0.3392 REMARK 3 L13: 0.7924 L23: -0.1574 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: -0.1106 S13: -0.2107 REMARK 3 S21: -0.2069 S22: 0.0360 S23: 0.2682 REMARK 3 S31: 0.3401 S32: -0.1822 S33: -0.1543 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 308 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9710 -14.7040 40.9230 REMARK 3 T TENSOR REMARK 3 T11: -0.1132 T22: -0.0854 REMARK 3 T33: -0.0204 T12: -0.0440 REMARK 3 T13: 0.0845 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.0942 L22: 1.3712 REMARK 3 L33: 1.6486 L12: -0.2245 REMARK 3 L13: -0.2451 L23: -0.3502 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.1087 S13: -0.0002 REMARK 3 S21: 0.2157 S22: 0.0733 S23: 0.3194 REMARK 3 S31: -0.1053 S32: -0.2067 S33: -0.1606 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 309 B 438 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8510 -9.7960 62.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.0629 REMARK 3 T33: -0.0770 T12: -0.1147 REMARK 3 T13: 0.0868 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.9842 L22: 1.8003 REMARK 3 L33: 2.0908 L12: 0.5027 REMARK 3 L13: 0.7974 L23: 0.6918 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.4040 S13: 0.2327 REMARK 3 S21: 0.5995 S22: -0.0854 S23: 0.0590 REMARK 3 S31: -0.0925 S32: 0.0392 S33: -0.0484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1P3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 10% PEG 6000, PH 6.7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.60900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.28900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.90650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.28900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.60900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.90650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 6 REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 SER A 27 REMARK 465 PRO A 28 REMARK 465 SER A 120 REMARK 465 LYS A 121 REMARK 465 GLY A 122 REMARK 465 HIS A 123 REMARK 465 THR A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 SER A 129 REMARK 465 PRO A 130 REMARK 465 VAL A 131 REMARK 465 LYS A 132 REMARK 465 ALA A 445 REMARK 465 SER B 6 REMARK 465 MET B 7 REMARK 465 GLY B 8 REMARK 465 ARG B 9 REMARK 465 ASP B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 PRO B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 CYS B 22 REMARK 465 GLY B 23 REMARK 465 LYS B 24 REMARK 465 HIS B 25 REMARK 465 ASN B 26 REMARK 465 SER B 27 REMARK 465 PRO B 28 REMARK 465 SER B 120 REMARK 465 LYS B 121 REMARK 465 GLY B 122 REMARK 465 HIS B 123 REMARK 465 THR B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 SER B 129 REMARK 465 PRO B 130 REMARK 465 VAL B 131 REMARK 465 LYS B 132 REMARK 465 GLN B 444 REMARK 465 ALA B 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 547 O HOH A 710 2.12 REMARK 500 O HOH A 472 O HOH B 791 2.16 REMARK 500 O HOH A 699 O HOH A 805 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 326 CB VAL A 326 CG2 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 220 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 367 CG - CD - NE ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 367 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 264 42.48 -80.70 REMARK 500 GLU A 275 -60.20 -150.04 REMARK 500 ARG A 293 78.47 -158.09 REMARK 500 HIS A 392 33.90 -92.03 REMARK 500 TYR B 65 -137.59 -73.88 REMARK 500 ARG B 264 38.08 -78.36 REMARK 500 GLU B 275 -68.03 -145.24 REMARK 500 LEU B 368 49.31 -91.69 REMARK 500 SER B 390 -128.48 -103.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLR A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLR B 500 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANT AT THIS POSITION DBREF 3GZC A 8 445 UNP Q96I15 SCLY_HUMAN 8 445 DBREF 3GZC B 8 445 UNP Q96I15 SCLY_HUMAN 8 445 SEQADV 3GZC SER A 6 UNP Q96I15 EXPRESSION TAG SEQADV 3GZC MET A 7 UNP Q96I15 EXPRESSION TAG SEQADV 3GZC THR A 175 UNP Q96I15 ALA 175 SEE REMARK 999 SEQADV 3GZC SER B 6 UNP Q96I15 EXPRESSION TAG SEQADV 3GZC MET B 7 UNP Q96I15 EXPRESSION TAG SEQADV 3GZC THR B 175 UNP Q96I15 ALA 175 SEE REMARK 999 SEQRES 1 A 440 SER MET GLY ARG ASP ALA PRO ALA PRO ALA ALA SER GLN SEQRES 2 A 440 PRO SER GLY CYS GLY LYS HIS ASN SER PRO GLU ARG LYS SEQRES 3 A 440 VAL TYR MET ASP TYR ASN ALA THR THR PRO LEU GLU PRO SEQRES 4 A 440 GLU VAL ILE GLN ALA MET THR LYS ALA MET TRP GLU ALA SEQRES 5 A 440 TRP GLY ASN PRO SER SER PRO TYR SER ALA GLY ARG LYS SEQRES 6 A 440 ALA LYS ASP ILE ILE ASN ALA ALA ARG GLU SER LEU ALA SEQRES 7 A 440 LYS MET ILE GLY GLY LYS PRO GLN ASP ILE ILE PHE THR SEQRES 8 A 440 SER GLY GLY THR GLU SER ASN ASN LEU VAL ILE HIS SER SEQRES 9 A 440 VAL VAL LYS HIS PHE HIS ALA ASN GLN THR SER LYS GLY SEQRES 10 A 440 HIS THR GLY GLY HIS HIS SER PRO VAL LYS GLY ALA LYS SEQRES 11 A 440 PRO HIS PHE ILE THR SER SER VAL GLU HIS ASP SER ILE SEQRES 12 A 440 ARG LEU PRO LEU GLU HIS LEU VAL GLU GLU GLN VAL ALA SEQRES 13 A 440 ALA VAL THR PHE VAL PRO VAL SER LYS VAL SER GLY GLN SEQRES 14 A 440 THR GLU VAL ASP ASP ILE LEU ALA ALA VAL ARG PRO THR SEQRES 15 A 440 THR ARG LEU VAL THR ILE MET LEU ALA ASN ASN GLU THR SEQRES 16 A 440 GLY ILE VAL MET PRO VAL PRO GLU ILE SER GLN ARG ILE SEQRES 17 A 440 LYS ALA LEU ASN GLN GLU ARG VAL ALA ALA GLY LEU PRO SEQRES 18 A 440 PRO ILE LEU VAL HIS THR ASP ALA ALA GLN ALA LEU GLY SEQRES 19 A 440 LYS GLN ARG VAL ASP VAL GLU ASP LEU GLY VAL ASP PHE SEQRES 20 A 440 LEU THR ILE VAL GLY HIS LYS PHE TYR GLY PRO ARG ILE SEQRES 21 A 440 GLY ALA LEU TYR ILE ARG GLY LEU GLY GLU PHE THR PRO SEQRES 22 A 440 LEU TYR PRO MET LEU PHE GLY GLY GLY GLN GLU ARG ASN SEQRES 23 A 440 PHE ARG PRO GLY THR GLU ASN THR PRO MET ILE ALA GLY SEQRES 24 A 440 LEU GLY LYS ALA ALA GLU LEU VAL THR GLN ASN CYS GLU SEQRES 25 A 440 ALA TYR GLU ALA HIS MET ARG ASP VAL ARG ASP TYR LEU SEQRES 26 A 440 GLU GLU ARG LEU GLU ALA GLU PHE GLY GLN LYS ARG ILE SEQRES 27 A 440 HIS LEU ASN SER GLN PHE PRO GLY THR GLN ARG LEU PRO SEQRES 28 A 440 ASN THR CYS ASN PHE SER ILE ARG GLY PRO ARG LEU GLN SEQRES 29 A 440 GLY HIS VAL VAL LEU ALA GLN CYS ARG VAL LEU MET ALA SEQRES 30 A 440 SER VAL GLY ALA ALA CYS HIS SER ASP HIS GLY ASP GLN SEQRES 31 A 440 PRO SER PRO VAL LEU LEU SER TYR GLY VAL PRO PHE ASP SEQRES 32 A 440 VAL ALA ARG ASN ALA LEU ARG LEU SER VAL GLY ARG SER SEQRES 33 A 440 THR THR ARG ALA GLU VAL ASP LEU VAL VAL GLN ASP LEU SEQRES 34 A 440 LYS GLN ALA VAL ALA GLN LEU GLU ASP GLN ALA SEQRES 1 B 440 SER MET GLY ARG ASP ALA PRO ALA PRO ALA ALA SER GLN SEQRES 2 B 440 PRO SER GLY CYS GLY LYS HIS ASN SER PRO GLU ARG LYS SEQRES 3 B 440 VAL TYR MET ASP TYR ASN ALA THR THR PRO LEU GLU PRO SEQRES 4 B 440 GLU VAL ILE GLN ALA MET THR LYS ALA MET TRP GLU ALA SEQRES 5 B 440 TRP GLY ASN PRO SER SER PRO TYR SER ALA GLY ARG LYS SEQRES 6 B 440 ALA LYS ASP ILE ILE ASN ALA ALA ARG GLU SER LEU ALA SEQRES 7 B 440 LYS MET ILE GLY GLY LYS PRO GLN ASP ILE ILE PHE THR SEQRES 8 B 440 SER GLY GLY THR GLU SER ASN ASN LEU VAL ILE HIS SER SEQRES 9 B 440 VAL VAL LYS HIS PHE HIS ALA ASN GLN THR SER LYS GLY SEQRES 10 B 440 HIS THR GLY GLY HIS HIS SER PRO VAL LYS GLY ALA LYS SEQRES 11 B 440 PRO HIS PHE ILE THR SER SER VAL GLU HIS ASP SER ILE SEQRES 12 B 440 ARG LEU PRO LEU GLU HIS LEU VAL GLU GLU GLN VAL ALA SEQRES 13 B 440 ALA VAL THR PHE VAL PRO VAL SER LYS VAL SER GLY GLN SEQRES 14 B 440 THR GLU VAL ASP ASP ILE LEU ALA ALA VAL ARG PRO THR SEQRES 15 B 440 THR ARG LEU VAL THR ILE MET LEU ALA ASN ASN GLU THR SEQRES 16 B 440 GLY ILE VAL MET PRO VAL PRO GLU ILE SER GLN ARG ILE SEQRES 17 B 440 LYS ALA LEU ASN GLN GLU ARG VAL ALA ALA GLY LEU PRO SEQRES 18 B 440 PRO ILE LEU VAL HIS THR ASP ALA ALA GLN ALA LEU GLY SEQRES 19 B 440 LYS GLN ARG VAL ASP VAL GLU ASP LEU GLY VAL ASP PHE SEQRES 20 B 440 LEU THR ILE VAL GLY HIS LYS PHE TYR GLY PRO ARG ILE SEQRES 21 B 440 GLY ALA LEU TYR ILE ARG GLY LEU GLY GLU PHE THR PRO SEQRES 22 B 440 LEU TYR PRO MET LEU PHE GLY GLY GLY GLN GLU ARG ASN SEQRES 23 B 440 PHE ARG PRO GLY THR GLU ASN THR PRO MET ILE ALA GLY SEQRES 24 B 440 LEU GLY LYS ALA ALA GLU LEU VAL THR GLN ASN CYS GLU SEQRES 25 B 440 ALA TYR GLU ALA HIS MET ARG ASP VAL ARG ASP TYR LEU SEQRES 26 B 440 GLU GLU ARG LEU GLU ALA GLU PHE GLY GLN LYS ARG ILE SEQRES 27 B 440 HIS LEU ASN SER GLN PHE PRO GLY THR GLN ARG LEU PRO SEQRES 28 B 440 ASN THR CYS ASN PHE SER ILE ARG GLY PRO ARG LEU GLN SEQRES 29 B 440 GLY HIS VAL VAL LEU ALA GLN CYS ARG VAL LEU MET ALA SEQRES 30 B 440 SER VAL GLY ALA ALA CYS HIS SER ASP HIS GLY ASP GLN SEQRES 31 B 440 PRO SER PRO VAL LEU LEU SER TYR GLY VAL PRO PHE ASP SEQRES 32 B 440 VAL ALA ARG ASN ALA LEU ARG LEU SER VAL GLY ARG SER SEQRES 33 B 440 THR THR ARG ALA GLU VAL ASP LEU VAL VAL GLN ASP LEU SEQRES 34 B 440 LYS GLN ALA VAL ALA GLN LEU GLU ASP GLN ALA HET PLR A 500 15 HET PLR B 500 15 HETNAM PLR (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN HETNAM 2 PLR PHOSPHATE HETSYN PLR 4'-DEOXYPYRIDOXINE PHOSPHATE FORMUL 3 PLR 2(C8 H12 N O5 P) FORMUL 5 HOH *457(H2 O) HELIX 1 1 GLU A 43 ALA A 57 1 15 HELIX 2 2 TYR A 65 GLY A 87 1 23 HELIX 3 3 LYS A 89 GLN A 91 5 3 HELIX 4 4 GLY A 98 THR A 119 1 22 HELIX 5 5 HIS A 145 GLU A 158 1 14 HELIX 6 6 GLU A 176 ALA A 183 1 8 HELIX 7 7 PRO A 205 GLY A 224 1 20 HELIX 8 8 ASP A 244 GLY A 249 1 6 HELIX 9 9 HIS A 258 PHE A 260 5 3 HELIX 10 10 GLY A 287 PHE A 292 5 6 HELIX 11 11 ASN A 298 GLY A 339 1 42 HELIX 12 12 GLN A 369 CYS A 377 1 9 HELIX 13 13 ALA A 386 GLY A 393 5 8 HELIX 14 14 SER A 397 TYR A 403 1 7 HELIX 15 15 PRO A 406 ASN A 412 1 7 HELIX 16 16 THR A 423 GLN A 444 1 22 HELIX 17 17 GLU B 43 ALA B 57 1 15 HELIX 18 18 TYR B 65 GLY B 87 1 23 HELIX 19 19 LYS B 89 GLN B 91 5 3 HELIX 20 20 GLY B 98 GLN B 118 1 21 HELIX 21 21 HIS B 145 GLU B 158 1 14 HELIX 22 22 GLU B 176 ALA B 182 1 7 HELIX 23 23 PRO B 205 GLY B 224 1 20 HELIX 24 24 ASP B 244 GLY B 249 1 6 HELIX 25 25 HIS B 258 PHE B 260 5 3 HELIX 26 26 GLN B 288 PHE B 292 5 5 HELIX 27 27 ASN B 298 GLY B 339 1 42 HELIX 28 28 GLN B 369 CYS B 377 1 9 HELIX 29 29 SER B 397 TYR B 403 1 7 HELIX 30 30 PRO B 406 ASN B 412 1 7 HELIX 31 31 THR B 423 ASP B 443 1 21 SHEET 1 A 2 VAL A 32 TYR A 33 0 SHEET 2 A 2 LEU A 380 MET A 381 1 O MET A 381 N VAL A 32 SHEET 1 B 7 ILE A 93 THR A 96 0 SHEET 2 B 7 GLY A 266 ILE A 270 -1 O LEU A 268 N ILE A 94 SHEET 3 B 7 PHE A 252 VAL A 256 -1 N LEU A 253 O TYR A 269 SHEET 4 B 7 LEU A 229 ASP A 233 1 N THR A 232 O THR A 254 SHEET 5 B 7 THR A 188 THR A 192 1 N VAL A 191 O HIS A 231 SHEET 6 B 7 HIS A 137 SER A 141 1 N ILE A 139 O THR A 192 SHEET 7 B 7 ALA A 162 VAL A 166 1 O VAL A 166 N THR A 140 SHEET 1 C 3 ILE A 343 LEU A 345 0 SHEET 2 C 3 THR A 358 ILE A 363 -1 O SER A 362 N HIS A 344 SHEET 3 C 3 ALA A 413 SER A 417 -1 O LEU A 414 N PHE A 361 SHEET 1 D 2 VAL B 32 TYR B 33 0 SHEET 2 D 2 LEU B 380 MET B 381 1 O MET B 381 N VAL B 32 SHEET 1 E 7 ILE B 93 THR B 96 0 SHEET 2 E 7 GLY B 266 ILE B 270 -1 O LEU B 268 N ILE B 94 SHEET 3 E 7 PHE B 252 VAL B 256 -1 N ILE B 255 O ALA B 267 SHEET 4 E 7 LEU B 229 ASP B 233 1 N THR B 232 O THR B 254 SHEET 5 E 7 THR B 188 THR B 192 1 N VAL B 191 O HIS B 231 SHEET 6 E 7 HIS B 137 SER B 141 1 N ILE B 139 O LEU B 190 SHEET 7 E 7 ALA B 162 VAL B 166 1 O THR B 164 N THR B 140 SHEET 1 F 3 ILE B 343 LEU B 345 0 SHEET 2 F 3 THR B 358 ILE B 363 -1 O SER B 362 N HIS B 344 SHEET 3 F 3 ALA B 413 SER B 417 -1 O LEU B 416 N CYS B 359 SHEET 1 G 2 CYS B 388 HIS B 389 0 SHEET 2 G 2 ASP B 394 GLN B 395 -1 O GLN B 395 N CYS B 388 LINK NZ LYS A 259 C4A PLR A 500 1555 1555 1.34 LINK NZ LYS B 259 C4A PLR B 500 1555 1555 1.33 SITE 1 AC1 14 GLY A 99 THR A 100 HIS A 145 SER A 147 SITE 2 AC1 14 ASP A 233 ALA A 235 GLN A 236 VAL A 256 SITE 3 AC1 14 HIS A 258 LYS A 259 HOH A 461 HOH A 470 SITE 4 AC1 14 HOH A 596 THR B 296 SITE 1 AC2 13 THR A 296 GLY B 99 THR B 100 HIS B 145 SITE 2 AC2 13 SER B 147 ASP B 233 ALA B 235 GLN B 236 SITE 3 AC2 13 HIS B 258 LYS B 259 HOH B 459 HOH B 569 SITE 4 AC2 13 HOH B 666 CRYST1 59.218 85.813 188.578 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005303 0.00000