PDB Short entry for 3H0T HEADER IMMUNE SYSTEM/ANTIMICROBIAL PROTEIN 10-APR-09 3H0T TITLE HEPCIDIN-FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT, LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT, HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEPCIDIN; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: UNP RESIDUES 60-84; COMPND 13 SYNONYM: LIVER-EXPRESSED ANTIMICROBIAL PEPTIDE, LEAP-1, PUTATIVE COMPND 14 LIVER TUMOR REGRESSOR, PLTR, HEPCIDIN-25, HEPC25, HEPCIDIN-20, COMPND 15 HEPC20; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: HAMP, HEPC, HEPCIDIN, LEAP1; SOURCE 18 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS PEPTIDE-FAB COMPLEX, ANTIBIOTIC, ANTIMICROBIAL, CLEAVAGE ON PAIR OF KEYWDS 2 BASIC RESIDUES, DISEASE MUTATION, DISULFIDE BOND, FUNGICIDE, KEYWDS 3 HORMONE, SECRETED, IMMUNE SYSTEM-ANTIMICROBIAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.SYED,V.LI REVDAT 4 06-SEP-23 3H0T 1 REMARK REVDAT 3 13-OCT-09 3H0T 1 JRNL REVDAT 2 08-SEP-09 3H0T 1 JRNL REVDAT 1 23-JUN-09 3H0T 0 JRNL AUTH J.B.JORDAN,L.POPPE,M.HANIU,T.ARVEDSON,R.SYED,V.LI,H.KOHNO, JRNL AUTH 2 H.KIM,P.D.SCHNIER,T.S.HARVEY,L.P.MIRANDA,J.CHEETHAM,B.J.SASU JRNL TITL HEPCIDIN REVISITED, DISULFIDE CONNECTIVITY, DYNAMICS, AND JRNL TITL 2 STRUCTURE. JRNL REF J.BIOL.CHEM. V. 284 24155 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19553669 JRNL DOI 10.1074/JBC.M109.017764 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 41776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17000 REMARK 3 B22 (A**2) : 2.69000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3548 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4848 ; 2.245 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 7.461 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;35.894 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;15.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.605 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2670 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1502 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2403 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 317 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2356 ; 1.484 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3747 ; 2.422 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 3.529 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1101 ; 5.268 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 86.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 8FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES,70% MPD, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 87.03850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.08450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 87.03850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.08450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -10.53823 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.77841 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 224 REMARK 465 CYS B 225 REMARK 465 ALA B 226 REMARK 465 ALA B 227 REMARK 465 ASP B 228 REMARK 465 GLU B 229 REMARK 465 VAL B 230 REMARK 465 ASP B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 ASP C 1 REMARK 465 THR C 2 REMARK 465 THR C 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS C 3 CG ND1 CD2 CE1 NE2 REMARK 470 PHE C 4 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 24 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 349 O HOH B 397 2.08 REMARK 500 O HOH B 315 O HOH B 357 2.11 REMARK 500 OE1 GLN B 68 O HOH B 420 2.16 REMARK 500 OE1 GLU B 157 O HOH B 386 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 138 CB CYS A 138 SG 0.105 REMARK 500 VAL A 199 CB VAL A 199 CG2 0.151 REMARK 500 SER B 139 CA SER B 139 CB 0.119 REMARK 500 ALA B 177 CA ALA B 177 CB 0.139 REMARK 500 TYR B 185 CE2 TYR B 185 CD2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 139 CB - CG - CD2 ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 142 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 VAL A 206 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 CYS B 22 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 CYS B 149 CB - CA - C ANGL. DEV. = 8.3 DEGREES REMARK 500 CYS B 205 CA - CB - SG ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 168.49 -49.95 REMARK 500 GLU A 51 63.43 36.74 REMARK 500 ASP A 52 -40.07 71.23 REMARK 500 SER A 53 0.15 -159.46 REMARK 500 SER A 93 -155.08 -152.25 REMARK 500 ASP A 95 -158.29 -142.86 REMARK 500 ASP A 155 -121.31 52.54 REMARK 500 ASN A 174 -2.08 77.97 REMARK 500 THR A 213 35.70 -86.14 REMARK 500 CYS A 215 118.39 52.14 REMARK 500 SER B 15 -16.58 85.85 REMARK 500 SER B 44 -42.15 101.57 REMARK 500 SER B 57 -1.26 62.51 REMARK 500 CYS C 13 -169.03 -107.64 REMARK 500 CYS C 14 96.23 -42.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 3H0T C 1 25 UNP P81172 HEPC_HUMAN 60 84 DBREF 3H0T A 1 216 PDB 3H0T 3H0T 1 216 DBREF 3H0T B 1 237 PDB 3H0T 3H0T 1 237 SEQRES 1 A 216 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 A 216 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 A 216 GLY SER ILE ALA SER TYR TYR VAL GLN TRP TYR GLN GLN SEQRES 4 A 216 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 A 216 SER GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 216 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 A 216 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 A 216 GLN SER TYR ASP SER SER ASN VAL VAL PHE GLY GLY GLY SEQRES 9 A 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 A 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 A 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 A 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 A 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 A 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 A 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 A 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 A 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 237 GLN VAL GLN LEU GLN GLN SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 237 PRO SER GLN THR LEU SER LEU THR CYS ALA ILE SER GLY SEQRES 3 B 237 ASP SER VAL SER SER ASN SER ALA ALA TRP ASN TRP ILE SEQRES 4 B 237 ARG GLN SER PRO SER ARG GLY LEU GLU TRP LEU GLY ARG SEQRES 5 B 237 THR TYR TYR ARG SER LYS TRP PHE ASN ASP TYR ALA VAL SEQRES 6 B 237 SER VAL GLN SER ARG ILE THR ILE ASN PRO ASP THR SER SEQRES 7 B 237 LYS ASN GLN PHE SER LEU GLN LEU ASN SER VAL THR PRO SEQRES 8 B 237 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG GLY ILE VAL SEQRES 9 B 237 PHE SER TYR ALA MET ASP VAL TRP GLY GLN GLY THR THR SEQRES 10 B 237 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 B 237 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 B 237 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 B 237 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 B 237 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 B 237 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 B 237 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 B 237 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 B 237 PRO LYS SER CYS ALA ALA ASP GLU VAL ASP HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS SEQRES 1 C 25 ASP THR HIS PHE PRO ILE CYS ILE PHE CYS CYS GLY CYS SEQRES 2 C 25 CYS HIS ARG SER LYS CYS GLY MET CYS CYS LYS THR FORMUL 4 HOH *366(H2 O) HELIX 1 1 SER A 28 TYR A 32 5 5 HELIX 2 2 TYR A 50 GLN A 54 5 5 HELIX 3 3 LYS A 82 GLU A 86 5 5 HELIX 4 4 SER A 125 ALA A 131 1 7 HELIX 5 5 THR A 185 SER A 191 1 7 HELIX 6 6 ALA B 64 SER B 69 1 6 HELIX 7 7 THR B 90 THR B 94 5 5 HELIX 8 8 SER B 136 LYS B 138 5 3 HELIX 9 9 SER B 165 ALA B 167 5 3 HELIX 10 10 SER B 196 LEU B 198 5 3 HELIX 11 11 LYS B 210 ASN B 213 5 4 SHEET 1 A 4 LEU A 4 THR A 5 0 SHEET 2 A 4 VAL A 18 ARG A 24 -1 O THR A 23 N THR A 5 SHEET 3 A 4 SER A 73 ILE A 78 -1 O ILE A 78 N VAL A 18 SHEET 4 A 4 PHE A 63 ASP A 68 -1 N SER A 64 O THR A 77 SHEET 1 B 5 SER A 9 GLU A 12 0 SHEET 2 B 5 THR A 105 VAL A 109 1 O LYS A 106 N VAL A 10 SHEET 3 B 5 ALA A 87 TYR A 94 -1 N ALA A 87 O LEU A 107 SHEET 4 B 5 GLN A 35 GLN A 39 -1 N GLN A 39 O ASP A 88 SHEET 5 B 5 THR A 46 ILE A 49 -1 O THR A 46 N GLN A 38 SHEET 1 C 4 SER A 9 GLU A 12 0 SHEET 2 C 4 THR A 105 VAL A 109 1 O LYS A 106 N VAL A 10 SHEET 3 C 4 ALA A 87 TYR A 94 -1 N ALA A 87 O LEU A 107 SHEET 4 C 4 VAL A 99 PHE A 101 -1 O VAL A 100 N SER A 93 SHEET 1 D 4 SER A 118 PHE A 122 0 SHEET 2 D 4 ALA A 134 PHE A 143 -1 O SER A 141 N SER A 118 SHEET 3 D 4 TYR A 176 LEU A 184 -1 O SER A 180 N CYS A 138 SHEET 4 D 4 VAL A 163 THR A 165 -1 N GLU A 164 O TYR A 181 SHEET 1 E 4 SER A 118 PHE A 122 0 SHEET 2 E 4 ALA A 134 PHE A 143 -1 O SER A 141 N SER A 118 SHEET 3 E 4 TYR A 176 LEU A 184 -1 O SER A 180 N CYS A 138 SHEET 4 E 4 SER A 169 LYS A 170 -1 N SER A 169 O ALA A 177 SHEET 1 F 4 SER A 157 VAL A 159 0 SHEET 2 F 4 THR A 149 ALA A 154 -1 N ALA A 154 O SER A 157 SHEET 3 F 4 TYR A 195 HIS A 201 -1 O GLN A 198 N ALA A 151 SHEET 4 F 4 SER A 204 VAL A 210 -1 O VAL A 206 N VAL A 199 SHEET 1 G 4 GLN B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 G 4 GLN B 81 LEU B 86 -1 O PHE B 82 N CYS B 22 SHEET 4 G 4 ILE B 71 THR B 72 -1 N THR B 72 O GLN B 85 SHEET 1 H 4 GLN B 3 SER B 7 0 SHEET 2 H 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 H 4 GLN B 81 LEU B 86 -1 O PHE B 82 N CYS B 22 SHEET 4 H 4 PRO B 75 ASP B 76 -1 N ASP B 76 O GLN B 81 SHEET 1 I 6 LEU B 11 VAL B 12 0 SHEET 2 I 6 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 I 6 ALA B 95 ILE B 103 -1 N ALA B 95 O VAL B 118 SHEET 4 I 6 ALA B 35 SER B 42 -1 N ILE B 39 O TYR B 98 SHEET 5 I 6 GLY B 46 TYR B 55 -1 O LEU B 50 N TRP B 38 SHEET 6 I 6 TRP B 59 TYR B 63 -1 O PHE B 60 N TYR B 54 SHEET 1 J 4 LEU B 11 VAL B 12 0 SHEET 2 J 4 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 J 4 ALA B 95 ILE B 103 -1 N ALA B 95 O VAL B 118 SHEET 4 J 4 ALA B 108 TRP B 112 -1 O ASP B 110 N ARG B 101 SHEET 1 K 4 SER B 129 LEU B 133 0 SHEET 2 K 4 THR B 144 TYR B 154 -1 O LEU B 150 N PHE B 131 SHEET 3 K 4 TYR B 185 PRO B 194 -1 O LEU B 187 N VAL B 151 SHEET 4 K 4 HIS B 173 THR B 174 -1 N HIS B 173 O VAL B 190 SHEET 1 L 4 THR B 140 SER B 141 0 SHEET 2 L 4 THR B 144 TYR B 154 -1 O THR B 144 N SER B 141 SHEET 3 L 4 TYR B 185 PRO B 194 -1 O LEU B 187 N VAL B 151 SHEET 4 L 4 VAL B 178 LEU B 179 -1 N VAL B 178 O SER B 186 SHEET 1 M 3 THR B 160 TRP B 163 0 SHEET 2 M 3 ILE B 204 HIS B 209 -1 O ASN B 208 N THR B 160 SHEET 3 M 3 THR B 214 LYS B 219 -1 O VAL B 216 N VAL B 207 SHEET 1 N 2 CYS C 7 CYS C 10 0 SHEET 2 N 2 GLY C 20 CYS C 23 -1 O CYS C 22 N ILE C 8 SSBOND 1 CYS A 22 CYS A 91 1555 1555 2.12 SSBOND 2 CYS A 138 CYS A 197 1555 1555 1.99 SSBOND 3 CYS B 22 CYS B 99 1555 1555 2.22 SSBOND 4 CYS B 149 CYS B 205 1555 1555 2.16 SSBOND 5 CYS C 7 CYS C 23 1555 1555 2.04 SSBOND 6 CYS C 10 CYS C 13 1555 1555 2.04 SSBOND 7 CYS C 11 CYS C 19 1555 1555 2.07 SSBOND 8 CYS C 14 CYS C 22 1555 1555 2.03 CISPEP 1 TYR A 144 PRO A 145 0 3.31 CISPEP 2 GLU A 214 CYS A 215 0 -15.07 CISPEP 3 CYS A 215 SER A 216 0 6.90 CISPEP 4 PHE B 155 PRO B 156 0 -8.43 CISPEP 5 GLU B 157 PRO B 158 0 1.81 CISPEP 6 CYS C 14 HIS C 15 0 -9.64 CRYST1 174.077 52.169 65.630 90.00 99.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005745 0.000000 0.000934 0.00000 SCALE2 0.000000 0.019168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015437 0.00000