PDB Short entry for 3H2U HEADER CELL ADHESION 14-APR-09 3H2U TITLE HUMAN RAVER1 RRM1, RRM2, AND RRM3 DOMAINS IN COMPLEX WITH HUMAN TITLE 2 VINCULIN TAIL DOMAIN VT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAVER-1; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: RRM 1, RRM 2, AND RRM 3 DOMAINS; COMPND 10 SYNONYM: RIBONUCLEOPROTEIN PTB-BINDING 1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: RAVER1, KIAA1978; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOCAL ADHESION, ACTIN CYTOSKELETON, RNP MOTIF, RNA BINDING, KEYWDS 2 ALTERNATIVE SPLICING, CYTOPLASM, NUCLEUS, PHOSPHOPROTEIN, RNA- KEYWDS 3 BINDING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.H.LEE,E.S.RANGARAJAN,S.D.YOGESHA,T.IZARD REVDAT 2 06-SEP-23 3H2U 1 REMARK REVDAT 1 28-JUL-09 3H2U 0 JRNL AUTH J.H.LEE,E.S.RANGARAJAN,S.D.YOGESHA,T.IZARD JRNL TITL RAVER1 INTERACTIONS WITH VINCULIN AND RNA SUGGEST A JRNL TITL 2 FEED-FORWARD PATHWAY IN DIRECTING MRNA TO FOCAL ADHESIONS JRNL REF STRUCTURE V. 17 833 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19523901 JRNL DOI 10.1016/J.STR.2009.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 1.3.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6363 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2711 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6031 REMARK 3 BIN R VALUE (WORKING SET) : 0.2701 REMARK 3 BIN FREE R VALUE : 0.2894 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 332 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.84641 REMARK 3 B22 (A**2) : -6.46322 REMARK 3 B33 (A**2) : 15.30963 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.484 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7234 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 9714 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1561 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 194 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 1047 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 7234 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 192 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.34 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1RKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 7.5), 200 MM SODIUM REMARK 280 NITRATE, AND 16% PEG-3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.37700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.01350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.45300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.01350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.37700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.45300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 879 REMARK 465 GLU A 880 REMARK 465 LYS A 881 REMARK 465 TRP A 1064 REMARK 465 TYR A 1065 REMARK 465 GLN A 1066 REMARK 465 LEU B 318 REMARK 465 ASN B 319 REMARK 465 ARG B 320 REMARK 465 GLY B 321 REMARK 465 GLU C 879 REMARK 465 GLU C 880 REMARK 465 LYS C 881 REMARK 465 ASP C 882 REMARK 465 LYS C 889 REMARK 465 ALA C 890 REMARK 465 GLY C 891 REMARK 465 THR C 1050 REMARK 465 ASP C 1051 REMARK 465 ALA C 1052 REMARK 465 GLY C 1053 REMARK 465 TRP C 1064 REMARK 465 TYR C 1065 REMARK 465 GLN C 1066 REMARK 465 ASN D 319 REMARK 465 ARG D 320 REMARK 465 GLY D 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 209 N GLY B 211 1.80 REMARK 500 OD1 ASP D 234 N ALA D 237 1.88 REMARK 500 O ASP D 234 CD1 LEU D 253 2.11 REMARK 500 OG1 THR C 973 O LYS C 1047 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 889 CB LYS A 889 CG -0.218 REMARK 500 GLU A 892 CG GLU A 892 CD -0.181 REMARK 500 GLU A 892 CD GLU A 892 OE1 -0.109 REMARK 500 GLU A 892 CD GLU A 892 OE2 -0.169 REMARK 500 VAL A 893 CA VAL A 893 CB -0.204 REMARK 500 VAL A 893 CB VAL A 893 CG1 -0.272 REMARK 500 VAL A 893 CB VAL A 893 CG2 -0.303 REMARK 500 VAL A 893 C VAL A 893 O -0.165 REMARK 500 ILE A 894 CA ILE A 894 CB -0.246 REMARK 500 ILE A 894 CB ILE A 894 CG2 -0.317 REMARK 500 ILE A 894 C ILE A 894 O -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 886 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 VAL A 893 CG1 - CB - CG2 ANGL. DEV. = -16.4 DEGREES REMARK 500 ILE A 894 CG1 - CB - CG2 ANGL. DEV. = -18.8 DEGREES REMARK 500 PRO A1063 C - N - CD ANGL. DEV. = -28.5 DEGREES REMARK 500 PRO C 886 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 883 137.65 -35.60 REMARK 500 LYS A 889 -141.60 -169.72 REMARK 500 GLU A 892 61.91 100.68 REMARK 500 GLN A 983 -71.83 -52.76 REMARK 500 VAL A 984 3.54 -48.50 REMARK 500 CYS A 985 -4.29 -140.51 REMARK 500 LYS A1061 64.86 -118.46 REMARK 500 GLU B 120 -3.21 82.03 REMARK 500 ASP B 131 -94.03 -94.99 REMARK 500 ARG B 168 -71.97 -78.80 REMARK 500 ALA B 244 -1.50 -49.40 REMARK 500 VAL B 245 -49.41 -141.70 REMARK 500 CYS B 251 114.51 -175.11 REMARK 500 GLN B 257 42.07 -97.95 REMARK 500 GLN B 260 -176.08 -60.55 REMARK 500 LEU B 287 123.74 -175.92 REMARK 500 PRO B 301 152.52 -48.07 REMARK 500 THR B 316 28.84 -54.61 REMARK 500 VAL C 984 2.87 -49.44 REMARK 500 SER C1012 151.81 -42.95 REMARK 500 ALA C1044 5.77 -65.09 REMARK 500 TRP C1058 79.19 -105.60 REMARK 500 GLU D 120 -4.33 71.55 REMARK 500 ASP D 131 -80.50 -97.11 REMARK 500 ALA D 132 60.00 -100.22 REMARK 500 CYS D 161 108.01 -162.07 REMARK 500 ARG D 168 -72.57 -68.86 REMARK 500 ALA D 244 2.32 -56.25 REMARK 500 VAL D 245 -42.24 -142.40 REMARK 500 CYS D 251 108.85 -179.31 REMARK 500 GLN D 260 178.10 -46.97 REMARK 500 PRO D 301 162.28 -45.82 REMARK 500 THR D 316 47.23 -60.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 892 VAL A 893 146.40 REMARK 500 THR B 208 ASP B 209 -143.20 REMARK 500 ALA B 210 GLY B 211 140.62 REMARK 500 THR D 208 ASP D 209 -142.51 REMARK 500 ASP D 209 ALA D 210 -109.45 REMARK 500 ASP D 234 VAL D 235 131.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKE RELATED DB: PDB REMARK 900 RELATED ID: 1TR2 RELATED DB: PDB REMARK 900 RELATED ID: 3H2V RELATED DB: PDB DBREF 3H2U A 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2U B 39 321 UNP Q8IY67 RAVR1_HUMAN 39 321 DBREF 3H2U C 879 1066 UNP B4DTM7 B4DTM7_HUMAN 140 327 DBREF 3H2U D 39 321 UNP Q8IY67 RAVR1_HUMAN 39 321 SEQRES 1 A 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 A 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 A 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 A 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 A 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 A 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 A 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 A 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 A 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 A 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 A 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 A 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 A 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 A 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 A 188 LYS THR PRO TRP TYR GLN SEQRES 1 B 283 LEU ASP PRO GLU GLU ILE ARG LYS ARG LEU GLU HIS THR SEQRES 2 B 283 GLU ARG GLN PHE ARG ASN ARG ARG LYS ILE LEU ILE ARG SEQRES 3 B 283 GLY LEU PRO GLY ASP VAL THR ASN GLN GLU VAL HIS ASP SEQRES 4 B 283 LEU LEU SER ASP TYR GLU LEU LYS TYR CYS PHE VAL ASP SEQRES 5 B 283 LYS TYR LYS GLY THR ALA PHE VAL THR LEU LEU ASN GLY SEQRES 6 B 283 GLU GLN ALA GLU ALA ALA ILE ASN ALA PHE HIS GLN SER SEQRES 7 B 283 ARG LEU ARG GLU ARG GLU LEU SER VAL GLN LEU GLN PRO SEQRES 8 B 283 THR ASP ALA LEU LEU CYS VAL ALA ASN LEU PRO PRO SER SEQRES 9 B 283 LEU THR GLN GLN GLN PHE GLU GLU LEU VAL ARG PRO PHE SEQRES 10 B 283 GLY SER LEU GLU ARG CYS PHE LEU VAL TYR SER GLU ARG SEQRES 11 B 283 THR GLY GLN SER LYS GLY TYR GLY PHE ALA GLU TYR MET SEQRES 12 B 283 LYS LYS ASP SER ALA ALA ARG ALA LYS SER ASP LEU LEU SEQRES 13 B 283 GLY LYS PRO LEU GLY PRO ARG THR LEU TYR VAL HIS TRP SEQRES 14 B 283 THR ASP ALA GLY GLN LEU THR PRO ALA LEU LEU HIS SER SEQRES 15 B 283 ARG CYS LEU CYS VAL ASP ARG LEU PRO PRO GLY PHE ASN SEQRES 16 B 283 ASP VAL ASP ALA LEU CYS ARG ALA LEU SER ALA VAL HIS SEQRES 17 B 283 SER PRO THR PHE CYS GLN LEU ALA CYS GLY GLN ASP GLY SEQRES 18 B 283 GLN LEU LYS GLY PHE ALA VAL LEU GLU TYR GLU THR ALA SEQRES 19 B 283 GLU MET ALA GLU GLU ALA GLN GLN GLN ALA ASP GLY LEU SEQRES 20 B 283 SER LEU GLY GLY SER HIS LEU ARG VAL SER PHE CYS ALA SEQRES 21 B 283 PRO GLY PRO PRO GLY ARG SER MET LEU ALA ALA LEU ILE SEQRES 22 B 283 ALA ALA GLN ALA THR ALA LEU ASN ARG GLY SEQRES 1 C 188 GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY SEQRES 2 C 188 GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG GLN SEQRES 3 C 188 LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS GLY ASN SEQRES 4 C 188 ASP ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET SEQRES 5 C 188 ALA GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR SEQRES 6 C 188 LYS ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS SEQRES 7 C 188 ALA SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA SEQRES 8 C 188 LYS GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU SEQRES 9 C 188 GLN VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU SEQRES 10 C 188 LYS ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG SEQRES 11 C 188 THR ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU SEQRES 12 C 188 MET LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL SEQRES 13 C 188 LYS GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS SEQRES 14 C 188 ILE ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG SEQRES 15 C 188 LYS THR PRO TRP TYR GLN SEQRES 1 D 283 LEU ASP PRO GLU GLU ILE ARG LYS ARG LEU GLU HIS THR SEQRES 2 D 283 GLU ARG GLN PHE ARG ASN ARG ARG LYS ILE LEU ILE ARG SEQRES 3 D 283 GLY LEU PRO GLY ASP VAL THR ASN GLN GLU VAL HIS ASP SEQRES 4 D 283 LEU LEU SER ASP TYR GLU LEU LYS TYR CYS PHE VAL ASP SEQRES 5 D 283 LYS TYR LYS GLY THR ALA PHE VAL THR LEU LEU ASN GLY SEQRES 6 D 283 GLU GLN ALA GLU ALA ALA ILE ASN ALA PHE HIS GLN SER SEQRES 7 D 283 ARG LEU ARG GLU ARG GLU LEU SER VAL GLN LEU GLN PRO SEQRES 8 D 283 THR ASP ALA LEU LEU CYS VAL ALA ASN LEU PRO PRO SER SEQRES 9 D 283 LEU THR GLN GLN GLN PHE GLU GLU LEU VAL ARG PRO PHE SEQRES 10 D 283 GLY SER LEU GLU ARG CYS PHE LEU VAL TYR SER GLU ARG SEQRES 11 D 283 THR GLY GLN SER LYS GLY TYR GLY PHE ALA GLU TYR MET SEQRES 12 D 283 LYS LYS ASP SER ALA ALA ARG ALA LYS SER ASP LEU LEU SEQRES 13 D 283 GLY LYS PRO LEU GLY PRO ARG THR LEU TYR VAL HIS TRP SEQRES 14 D 283 THR ASP ALA GLY GLN LEU THR PRO ALA LEU LEU HIS SER SEQRES 15 D 283 ARG CYS LEU CYS VAL ASP ARG LEU PRO PRO GLY PHE ASN SEQRES 16 D 283 ASP VAL ASP ALA LEU CYS ARG ALA LEU SER ALA VAL HIS SEQRES 17 D 283 SER PRO THR PHE CYS GLN LEU ALA CYS GLY GLN ASP GLY SEQRES 18 D 283 GLN LEU LYS GLY PHE ALA VAL LEU GLU TYR GLU THR ALA SEQRES 19 D 283 GLU MET ALA GLU GLU ALA GLN GLN GLN ALA ASP GLY LEU SEQRES 20 D 283 SER LEU GLY GLY SER HIS LEU ARG VAL SER PHE CYS ALA SEQRES 21 D 283 PRO GLY PRO PRO GLY ARG SER MET LEU ALA ALA LEU ILE SEQRES 22 D 283 ALA ALA GLN ALA THR ALA LEU ASN ARG GLY FORMUL 5 HOH *41(H2 O) HELIX 1 1 ASN A 895 LYS A 911 1 17 HELIX 2 2 ASN A 917 VAL A 937 1 21 HELIX 3 3 GLY A 942 CYS A 972 1 31 HELIX 4 4 ASP A 974 ARG A 987 1 14 HELIX 5 5 ARG A 987 LEU A 1006 1 20 HELIX 6 6 SER A 1012 SER A 1045 1 34 HELIX 7 7 ASP B 40 ASN B 57 1 18 HELIX 8 8 THR B 71 LEU B 79 1 9 HELIX 9 9 ASN B 102 HIS B 114 1 13 HELIX 10 10 THR B 144 ARG B 153 1 10 HELIX 11 11 LYS B 182 LEU B 194 1 13 HELIX 12 12 ASP B 234 LEU B 242 1 9 HELIX 13 13 THR B 271 ASP B 283 1 13 HELIX 14 14 PRO B 302 THR B 316 1 15 HELIX 15 15 ASN C 895 ARG C 910 1 16 HELIX 16 16 ASN C 917 VAL C 937 1 21 HELIX 17 17 GLY C 942 GLN C 971 1 30 HELIX 18 18 ASP C 974 ARG C 987 1 14 HELIX 19 19 ARG C 987 LEU C 1006 1 20 HELIX 20 20 SER C 1012 ALA C 1044 1 33 HELIX 21 21 ASP D 40 ASN D 57 1 18 HELIX 22 22 THR D 71 LEU D 79 1 9 HELIX 23 23 ASN D 102 HIS D 114 1 13 HELIX 24 24 THR D 144 ARG D 153 1 10 HELIX 25 25 PRO D 154 GLY D 156 5 3 HELIX 26 26 LYS D 182 LEU D 194 1 13 HELIX 27 27 THR D 214 HIS D 219 1 6 HELIX 28 28 VAL D 235 LEU D 242 1 8 HELIX 29 29 THR D 271 ASP D 283 1 13 HELIX 30 30 PRO D 302 THR D 316 1 15 SHEET 1 A 4 LEU B 84 VAL B 89 0 SHEET 2 A 4 THR B 95 LEU B 100 -1 O THR B 99 N LYS B 85 SHEET 3 A 4 LYS B 60 ARG B 64 -1 N ILE B 61 O VAL B 98 SHEET 4 A 4 SER B 124 LEU B 127 -1 O GLN B 126 N LEU B 62 SHEET 1 B 2 ARG B 117 LEU B 118 0 SHEET 2 B 2 ARG B 121 GLU B 122 -1 O ARG B 121 N LEU B 118 SHEET 1 C 4 LEU B 158 TYR B 165 0 SHEET 2 C 4 SER B 172 TYR B 180 -1 O GLU B 179 N GLU B 159 SHEET 3 C 4 LEU B 133 ALA B 137 -1 N LEU B 134 O ALA B 178 SHEET 4 C 4 TYR B 204 THR B 208 -1 O TYR B 204 N ALA B 137 SHEET 1 D 2 PRO B 197 LEU B 198 0 SHEET 2 D 2 ARG B 201 THR B 202 -1 O ARG B 201 N LEU B 198 SHEET 1 E 4 PHE B 250 CYS B 255 0 SHEET 2 E 4 LEU B 261 GLU B 268 -1 O LYS B 262 N ALA B 254 SHEET 3 E 4 CYS B 222 ASP B 226 -1 N LEU B 223 O LEU B 267 SHEET 4 E 4 ARG B 293 PHE B 296 -1 O SER B 295 N CYS B 224 SHEET 1 F 2 SER B 286 LEU B 287 0 SHEET 2 F 2 SER B 290 HIS B 291 -1 O SER B 290 N LEU B 287 SHEET 1 G 4 TYR D 86 ASP D 90 0 SHEET 2 G 4 THR D 95 THR D 99 -1 O THR D 99 N TYR D 86 SHEET 3 G 4 LYS D 60 ARG D 64 -1 N ILE D 61 O VAL D 98 SHEET 4 G 4 SER D 124 LEU D 127 -1 O GLN D 126 N LEU D 62 SHEET 1 H 2 ARG D 117 LEU D 118 0 SHEET 2 H 2 ARG D 121 GLU D 122 -1 O ARG D 121 N LEU D 118 SHEET 1 I 4 LEU D 158 TYR D 165 0 SHEET 2 I 4 SER D 172 TYR D 180 -1 O GLU D 179 N GLU D 159 SHEET 3 I 4 LEU D 133 ALA D 137 -1 N LEU D 134 O ALA D 178 SHEET 4 I 4 TYR D 204 TRP D 207 -1 O TYR D 204 N ALA D 137 SHEET 1 J 2 PRO D 197 LEU D 198 0 SHEET 2 J 2 ARG D 201 THR D 202 -1 O ARG D 201 N LEU D 198 SHEET 1 K 4 PHE D 250 ALA D 254 0 SHEET 2 K 4 LYS D 262 GLU D 268 -1 O LYS D 262 N ALA D 254 SHEET 3 K 4 CYS D 222 ASP D 226 -1 N VAL D 225 O ALA D 265 SHEET 4 K 4 ARG D 293 PHE D 296 -1 O SER D 295 N CYS D 224 SHEET 1 L 2 SER D 286 LEU D 287 0 SHEET 2 L 2 SER D 290 HIS D 291 -1 O SER D 290 N LEU D 287 SSBOND 1 CYS B 239 CYS B 251 1555 1555 2.03 SSBOND 2 CYS D 239 CYS D 251 1555 1555 2.03 CISPEP 1 ALA A 890 GLY A 891 0 -20.97 CISPEP 2 GLY A 891 GLU A 892 0 -4.35 CISPEP 3 ASP B 209 ALA B 210 0 19.73 CISPEP 4 ASP B 258 GLY B 259 0 -8.57 CISPEP 5 ALA D 210 GLY D 211 0 6.04 CRYST1 86.754 94.906 186.027 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005376 0.00000