PDB Short entry for 3H59 HEADER TRANSFERASE 21-APR-09 3H59 TITLE HEPATITIS C VIRUS POLYMERASE NS5B WITH THIAZINE INHIBITOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 2421-2989; COMPND 5 SYNONYM: NS5B, P68; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11105; SOURCE 4 STRAIN: BK; SOURCE 5 GENE: NS5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HCV, HEPATITIS, NS5B, TRANSFERASE RNA-DEPENDENT RNA KEYWDS 2 POLYMERASE, ACETYLATION, APOPTOSIS, ATP-BINDING, CAPSID KEYWDS 3 PROTEIN, CELL MEMBRANE, CYTOPLASM, DISULFIDE BOND, KEYWDS 4 ENDOPLASMIC RETICULUM, ENVELOPE PROTEIN, FUSION PROTEIN, KEYWDS 5 GLYCOPROTEIN, HELICASE, HOST-VIRUS INTERACTION, HYDROLASE, KEYWDS 6 INTERFERON ANTIVIRAL SYSTEM EVASION, LIPID DROPLET, KEYWDS 7 LIPOPROTEIN, MEMBRANE, METAL-BINDING, MITOCHONDRION, KEYWDS 8 MULTIFUNCTIONAL ENZYME, NUCLEOTIDE-BINDING, KEYWDS 9 NUCLEOTIDYLTRANSFERASE, NUCLEUS, ONCOGENE, PALMITATE, KEYWDS 10 PHOSPHOPROTEIN, PROTEASE, RIBONUCLEOPROTEIN, RNA KEYWDS 11 REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, KEYWDS 12 SECRETED, SERINE PROTEASE, SH3-BINDING, THIOL PROTEASE, KEYWDS 13 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSFERASE, KEYWDS 14 TRANSMEMBRANE, UBL CONJUGATION, VIRAL NUCLEOPROTEIN, KEYWDS 15 VIRION, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR S.F.HARRIS,M.GHATE REVDAT 2 03-NOV-09 3H59 1 JRNL REVDAT 1 08-SEP-09 3H59 0 JRNL AUTH J.DE VICENTE,R.T.HENDRICKS,D.B.SMITH,J.B.FELL, JRNL AUTH 2 J.FISCHER,S.R.SPENCER,P.J.STENGEL,P.MOHR, JRNL AUTH 3 J.E.ROBINSON,J.F.BLAKE,R.K.HILGENKAMP,C.YEE,J.ZHAO, JRNL AUTH 4 T.R.ELWORTHY,J.TRACY,E.CHIN,J.LI,A.LUI,B.WANG, JRNL AUTH 5 C.OSHIRO,S.F.HARRIS,M.GHATE,V.J.LEVEQUE,I.NAJERA, JRNL AUTH 6 S.LE POGAM,S.RAJYAGURU,G.AO-IEONG,L.ALEXANDROVA, JRNL AUTH 7 B.FITCH,M.BRANDL,M.MASJEDIZADEH,S.Y.WU,S.DE KECZER, JRNL AUTH 8 T.VORONIN JRNL TITL NON-NUCLEOSIDE INHIBITORS OF HCV POLYMERASE NS5B. JRNL TITL 2 PART 3: SYNTHESIS AND OPTIMIZATION STUDIES OF JRNL TITL 3 BENZOTHIAZINE-SUBSTITUTED TETRAMIC ACIDS JRNL REF BIOORG.MED.CHEM.LETT. V. 19 5648 2009 JRNL REFN ISSN 0960-894X JRNL PMID 19700319 JRNL DOI 10.1016/J.BMCL.2009.08.023 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 61529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 738 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9053 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6144 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12323 ; 1.338 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14959 ; 0.956 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1136 ; 5.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 364 ;33.965 ;22.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1535 ;14.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 72 ;13.691 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1383 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10038 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1838 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1895 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6130 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4317 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4480 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 596 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.319 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5823 ; 0.681 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2258 ; 0.139 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9125 ; 1.094 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3759 ; 1.629 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3198 ; 2.495 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3H59 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA CITRATE PH 4.9, 26% PEG REMARK 280 4000, 7.5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.59750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.20850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.59750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.20850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 SER A 563 REMARK 465 LEU A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 PRO B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 SER B 563 REMARK 465 LEU B 564 REMARK 465 SER B 565 REMARK 465 ARG B 566 REMARK 465 ALA B 567 REMARK 465 ARG B 568 REMARK 465 PRO B 569 REMARK 465 ARG B 570 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 737 O HOH B 853 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 311 CB CYS A 311 SG -0.112 REMARK 500 CYS B 311 CB CYS B 311 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 260 -58.06 -125.35 REMARK 500 SER A 347 50.10 73.17 REMARK 500 ALA A 348 61.26 -152.37 REMARK 500 ILE A 424 -62.09 -100.52 REMARK 500 LEU B 260 -63.62 -122.34 REMARK 500 SER B 347 62.66 66.98 REMARK 500 ALA B 348 57.94 -156.75 REMARK 500 ILE B 424 -61.17 -99.92 REMARK 500 TYR B 555 31.73 -145.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H59 A 571 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H59 B 571 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G86 RELATED DB: PDB REMARK 900 RELATED ID: 2GIQ RELATED DB: PDB REMARK 900 RELATED ID: 3H5S RELATED DB: PDB REMARK 900 RELATED ID: 3H5U RELATED DB: PDB DBREF 3H59 A 2 570 UNP P26663 POLG_HCVBK 2421 2989 DBREF 3H59 B 2 570 UNP P26663 POLG_HCVBK 2421 2989 SEQADV 3H59 MET A -5 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A -4 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A -3 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A -2 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A -1 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A 0 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS A 1 UNP P26663 EXPRESSION TAG SEQADV 3H59 MET B -5 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B -4 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B -3 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B -2 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B -1 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B 0 UNP P26663 EXPRESSION TAG SEQADV 3H59 HIS B 1 UNP P26663 EXPRESSION TAG SEQRES 1 A 576 MET HIS HIS HIS HIS HIS HIS MET SER TYR THR TRP THR SEQRES 2 A 576 GLY ALA LEU ILE THR PRO CYS ALA ALA GLU GLU SER LYS SEQRES 3 A 576 LEU PRO ILE ASN ALA LEU SER ASN SER LEU LEU ARG HIS SEQRES 4 A 576 HIS ASN MET VAL TYR ALA THR THR SER ARG SER ALA GLY SEQRES 5 A 576 LEU ARG GLN LYS LYS VAL THR PHE ASP ARG LEU GLN VAL SEQRES 6 A 576 LEU ASP ASP HIS TYR ARG ASP VAL LEU LYS GLU MET LYS SEQRES 7 A 576 ALA LYS ALA SER THR VAL LYS ALA LYS LEU LEU SER VAL SEQRES 8 A 576 GLU GLU ALA CYS LYS LEU THR PRO PRO HIS SER ALA LYS SEQRES 9 A 576 SER LYS PHE GLY TYR GLY ALA LYS ASP VAL ARG ASN LEU SEQRES 10 A 576 SER SER LYS ALA VAL ASN HIS ILE HIS SER VAL TRP LYS SEQRES 11 A 576 ASP LEU LEU GLU ASP THR VAL THR PRO ILE ASP THR THR SEQRES 12 A 576 ILE MET ALA LYS ASN GLU VAL PHE CYS VAL GLN PRO GLU SEQRES 13 A 576 LYS GLY GLY ARG LYS PRO ALA ARG LEU ILE VAL PHE PRO SEQRES 14 A 576 ASP LEU GLY VAL ARG VAL CYS GLU LYS MET ALA LEU TYR SEQRES 15 A 576 ASP VAL VAL SER THR LEU PRO GLN VAL VAL MET GLY SER SEQRES 16 A 576 SER TYR GLY PHE GLN TYR SER PRO GLY GLN ARG VAL GLU SEQRES 17 A 576 PHE LEU VAL ASN THR TRP LYS SER LYS LYS ASN PRO MET SEQRES 18 A 576 GLY PHE SER TYR ASP THR ARG CYS PHE ASP SER THR VAL SEQRES 19 A 576 THR GLU ASN ASP ILE ARG VAL GLU GLU SER ILE TYR GLN SEQRES 20 A 576 CYS CYS ASP LEU ALA PRO GLU ALA ARG GLN ALA ILE LYS SEQRES 21 A 576 SER LEU THR GLU ARG LEU TYR ILE GLY GLY PRO LEU THR SEQRES 22 A 576 ASN SER LYS GLY GLN ASN CYS GLY TYR ARG ARG CYS ARG SEQRES 23 A 576 ALA SER GLY VAL LEU THR THR SER CYS GLY ASN THR LEU SEQRES 24 A 576 THR CYS TYR LEU LYS ALA SER ALA ALA CYS ARG ALA ALA SEQRES 25 A 576 LYS LEU GLN ASP CYS THR MET LEU VAL ASN GLY ASP ASP SEQRES 26 A 576 LEU VAL VAL ILE CYS GLU SER ALA GLY THR GLN GLU ASP SEQRES 27 A 576 ALA ALA SER LEU ARG VAL PHE THR GLU ALA MET THR ARG SEQRES 28 A 576 TYR SER ALA PRO PRO GLY ASP PRO PRO GLN PRO GLU TYR SEQRES 29 A 576 ASP LEU GLU LEU ILE THR SER CYS SER SER ASN VAL SER SEQRES 30 A 576 VAL ALA HIS ASP ALA SER GLY LYS ARG VAL TYR TYR LEU SEQRES 31 A 576 THR ARG ASP PRO THR THR PRO LEU ALA ARG ALA ALA TRP SEQRES 32 A 576 GLU THR ALA ARG HIS THR PRO VAL ASN SER TRP LEU GLY SEQRES 33 A 576 ASN ILE ILE MET TYR ALA PRO THR LEU TRP ALA ARG MET SEQRES 34 A 576 ILE LEU MET THR HIS PHE PHE SER ILE LEU LEU ALA GLN SEQRES 35 A 576 GLU GLN LEU GLU LYS ALA LEU ASP CYS GLN ILE TYR GLY SEQRES 36 A 576 ALA CYS TYR SER ILE GLU PRO LEU ASP LEU PRO GLN ILE SEQRES 37 A 576 ILE GLU ARG LEU HIS GLY LEU SER ALA PHE SER LEU HIS SEQRES 38 A 576 SER TYR SER PRO GLY GLU ILE ASN ARG VAL ALA SER CYS SEQRES 39 A 576 LEU ARG LYS LEU GLY VAL PRO PRO LEU ARG VAL TRP ARG SEQRES 40 A 576 HIS ARG ALA ARG SER VAL ARG ALA ARG LEU LEU SER GLN SEQRES 41 A 576 GLY GLY ARG ALA ALA THR CYS GLY LYS TYR LEU PHE ASN SEQRES 42 A 576 TRP ALA VAL LYS THR LYS LEU LYS LEU THR PRO ILE PRO SEQRES 43 A 576 ALA ALA SER ARG LEU ASP LEU SER GLY TRP PHE VAL ALA SEQRES 44 A 576 GLY TYR SER GLY GLY ASP ILE TYR HIS SER LEU SER ARG SEQRES 45 A 576 ALA ARG PRO ARG SEQRES 1 B 576 MET HIS HIS HIS HIS HIS HIS MET SER TYR THR TRP THR SEQRES 2 B 576 GLY ALA LEU ILE THR PRO CYS ALA ALA GLU GLU SER LYS SEQRES 3 B 576 LEU PRO ILE ASN ALA LEU SER ASN SER LEU LEU ARG HIS SEQRES 4 B 576 HIS ASN MET VAL TYR ALA THR THR SER ARG SER ALA GLY SEQRES 5 B 576 LEU ARG GLN LYS LYS VAL THR PHE ASP ARG LEU GLN VAL SEQRES 6 B 576 LEU ASP ASP HIS TYR ARG ASP VAL LEU LYS GLU MET LYS SEQRES 7 B 576 ALA LYS ALA SER THR VAL LYS ALA LYS LEU LEU SER VAL SEQRES 8 B 576 GLU GLU ALA CYS LYS LEU THR PRO PRO HIS SER ALA LYS SEQRES 9 B 576 SER LYS PHE GLY TYR GLY ALA LYS ASP VAL ARG ASN LEU SEQRES 10 B 576 SER SER LYS ALA VAL ASN HIS ILE HIS SER VAL TRP LYS SEQRES 11 B 576 ASP LEU LEU GLU ASP THR VAL THR PRO ILE ASP THR THR SEQRES 12 B 576 ILE MET ALA LYS ASN GLU VAL PHE CYS VAL GLN PRO GLU SEQRES 13 B 576 LYS GLY GLY ARG LYS PRO ALA ARG LEU ILE VAL PHE PRO SEQRES 14 B 576 ASP LEU GLY VAL ARG VAL CYS GLU LYS MET ALA LEU TYR SEQRES 15 B 576 ASP VAL VAL SER THR LEU PRO GLN VAL VAL MET GLY SER SEQRES 16 B 576 SER TYR GLY PHE GLN TYR SER PRO GLY GLN ARG VAL GLU SEQRES 17 B 576 PHE LEU VAL ASN THR TRP LYS SER LYS LYS ASN PRO MET SEQRES 18 B 576 GLY PHE SER TYR ASP THR ARG CYS PHE ASP SER THR VAL SEQRES 19 B 576 THR GLU ASN ASP ILE ARG VAL GLU GLU SER ILE TYR GLN SEQRES 20 B 576 CYS CYS ASP LEU ALA PRO GLU ALA ARG GLN ALA ILE LYS SEQRES 21 B 576 SER LEU THR GLU ARG LEU TYR ILE GLY GLY PRO LEU THR SEQRES 22 B 576 ASN SER LYS GLY GLN ASN CYS GLY TYR ARG ARG CYS ARG SEQRES 23 B 576 ALA SER GLY VAL LEU THR THR SER CYS GLY ASN THR LEU SEQRES 24 B 576 THR CYS TYR LEU LYS ALA SER ALA ALA CYS ARG ALA ALA SEQRES 25 B 576 LYS LEU GLN ASP CYS THR MET LEU VAL ASN GLY ASP ASP SEQRES 26 B 576 LEU VAL VAL ILE CYS GLU SER ALA GLY THR GLN GLU ASP SEQRES 27 B 576 ALA ALA SER LEU ARG VAL PHE THR GLU ALA MET THR ARG SEQRES 28 B 576 TYR SER ALA PRO PRO GLY ASP PRO PRO GLN PRO GLU TYR SEQRES 29 B 576 ASP LEU GLU LEU ILE THR SER CYS SER SER ASN VAL SER SEQRES 30 B 576 VAL ALA HIS ASP ALA SER GLY LYS ARG VAL TYR TYR LEU SEQRES 31 B 576 THR ARG ASP PRO THR THR PRO LEU ALA ARG ALA ALA TRP SEQRES 32 B 576 GLU THR ALA ARG HIS THR PRO VAL ASN SER TRP LEU GLY SEQRES 33 B 576 ASN ILE ILE MET TYR ALA PRO THR LEU TRP ALA ARG MET SEQRES 34 B 576 ILE LEU MET THR HIS PHE PHE SER ILE LEU LEU ALA GLN SEQRES 35 B 576 GLU GLN LEU GLU LYS ALA LEU ASP CYS GLN ILE TYR GLY SEQRES 36 B 576 ALA CYS TYR SER ILE GLU PRO LEU ASP LEU PRO GLN ILE SEQRES 37 B 576 ILE GLU ARG LEU HIS GLY LEU SER ALA PHE SER LEU HIS SEQRES 38 B 576 SER TYR SER PRO GLY GLU ILE ASN ARG VAL ALA SER CYS SEQRES 39 B 576 LEU ARG LYS LEU GLY VAL PRO PRO LEU ARG VAL TRP ARG SEQRES 40 B 576 HIS ARG ALA ARG SER VAL ARG ALA ARG LEU LEU SER GLN SEQRES 41 B 576 GLY GLY ARG ALA ALA THR CYS GLY LYS TYR LEU PHE ASN SEQRES 42 B 576 TRP ALA VAL LYS THR LYS LEU LYS LEU THR PRO ILE PRO SEQRES 43 B 576 ALA ALA SER ARG LEU ASP LEU SER GLY TRP PHE VAL ALA SEQRES 44 B 576 GLY TYR SER GLY GLY ASP ILE TYR HIS SER LEU SER ARG SEQRES 45 B 576 ALA ARG PRO ARG HET H59 A 571 38 HET H59 B 571 38 HETNAM H59 N-{3-[(5S)-5-(1,1-DIMETHYLPROPYL)-1-(4-FLUORO-3- HETNAM 2 H59 METHYLBENZYL)-4-HYDROXY-2-OXO-2,5-DIHYDRO-1H-PYRROL-3- HETNAM 3 H59 YL]-1,1-DIOXIDO-4H-1,4-BENZOTHIAZIN-7- HETNAM 4 H59 YL}METHANESULFONAMIDE FORMUL 3 H59 2(C26 H30 F N3 O6 S2) FORMUL 5 HOH *738(H2 O) HELIX 1 1 LEU A 26 LEU A 31 1 6 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 GLY A 188 1 25 HELIX 10 10 SER A 189 TYR A 195 5 7 HELIX 11 11 SER A 196 LYS A 211 1 16 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 GLN A 241 1 13 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 THR A 286 LYS A 307 1 22 HELIX 16 16 GLY A 328 TYR A 346 1 19 HELIX 17 17 ASP A 359 ILE A 363 5 5 HELIX 18 18 PRO A 388 ARG A 401 1 14 HELIX 19 19 ASN A 406 ALA A 416 1 11 HELIX 20 20 THR A 418 ILE A 424 1 7 HELIX 21 21 ILE A 424 GLN A 436 1 13 HELIX 22 22 GLU A 455 LEU A 457 5 3 HELIX 23 23 ASP A 458 GLY A 468 1 11 HELIX 24 24 LEU A 469 SER A 473 5 5 HELIX 25 25 SER A 478 GLY A 493 1 16 HELIX 26 26 PRO A 496 SER A 513 1 18 HELIX 27 27 GLY A 515 PHE A 526 1 12 HELIX 28 28 ASN A 527 VAL A 530 5 4 HELIX 29 29 ILE A 539 LEU A 545 5 7 HELIX 30 30 LEU B 26 LEU B 31 1 6 HELIX 31 31 HIS B 33 ASN B 35 5 3 HELIX 32 32 THR B 41 ARG B 43 5 3 HELIX 33 33 SER B 44 THR B 53 1 10 HELIX 34 34 ASP B 61 SER B 76 1 16 HELIX 35 35 SER B 84 LYS B 90 1 7 HELIX 36 36 GLY B 104 ASN B 110 1 7 HELIX 37 37 SER B 112 ASP B 129 1 18 HELIX 38 38 ASP B 164 GLY B 188 1 25 HELIX 39 39 SER B 189 TYR B 195 5 7 HELIX 40 40 SER B 196 SER B 210 1 15 HELIX 41 41 CYS B 223 VAL B 228 1 6 HELIX 42 42 THR B 229 GLN B 241 1 13 HELIX 43 43 ALA B 246 LEU B 260 1 15 HELIX 44 44 THR B 286 ALA B 306 1 21 HELIX 45 45 GLY B 328 TYR B 346 1 19 HELIX 46 46 ASP B 359 ILE B 363 5 5 HELIX 47 47 PRO B 388 ARG B 401 1 14 HELIX 48 48 ASN B 406 TYR B 415 1 10 HELIX 49 49 THR B 418 ILE B 424 1 7 HELIX 50 50 ILE B 424 GLN B 436 1 13 HELIX 51 51 GLU B 455 LEU B 457 5 3 HELIX 52 52 ASP B 458 GLY B 468 1 11 HELIX 53 53 LEU B 469 SER B 473 5 5 HELIX 54 54 SER B 478 GLY B 493 1 16 HELIX 55 55 PRO B 496 GLN B 514 1 19 HELIX 56 56 GLY B 515 PHE B 526 1 12 HELIX 57 57 ASN B 527 VAL B 530 5 4 HELIX 58 58 ILE B 539 ARG B 544 5 6 SHEET 1 A 5 TYR A 4 TRP A 6 0 SHEET 2 A 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 A 5 GLY A 264 THR A 267 -1 N LEU A 266 O CYS A 274 SHEET 4 A 5 THR A 136 ALA A 140 1 N THR A 136 O THR A 267 SHEET 5 A 5 LEU A 159 PHE A 162 -1 O PHE A 162 N THR A 137 SHEET 1 B 2 VAL A 37 ALA A 39 0 SHEET 2 B 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 C 3 PRO A 214 TYR A 219 0 SHEET 2 C 3 ASP A 319 GLU A 325 -1 O CYS A 324 N MET A 215 SHEET 3 C 3 GLN A 309 ASN A 316 -1 N GLN A 309 O GLU A 325 SHEET 1 D 2 ASN A 369 HIS A 374 0 SHEET 2 D 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 E 2 LEU A 443 ILE A 447 0 SHEET 2 E 2 ALA A 450 ILE A 454 -1 O ILE A 454 N LEU A 443 SHEET 1 F 5 TYR B 4 TRP B 6 0 SHEET 2 F 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 F 5 GLY B 264 THR B 267 -1 N LEU B 266 O CYS B 274 SHEET 4 F 5 THR B 136 ALA B 140 1 N ILE B 138 O THR B 267 SHEET 5 F 5 LEU B 159 PRO B 163 -1 O PHE B 162 N THR B 137 SHEET 1 G 2 VAL B 37 ALA B 39 0 SHEET 2 G 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 H 3 PRO B 214 TYR B 219 0 SHEET 2 H 3 ASP B 319 GLU B 325 -1 O VAL B 322 N PHE B 217 SHEET 3 H 3 GLN B 309 ASN B 316 -1 N ASN B 316 O ASP B 319 SHEET 1 I 2 ASN B 369 HIS B 374 0 SHEET 2 I 2 ARG B 380 THR B 385 -1 O THR B 385 N ASN B 369 SHEET 1 J 3 LEU B 443 ILE B 447 0 SHEET 2 J 3 ALA B 450 ILE B 454 -1 O TYR B 452 N CYS B 445 SHEET 3 J 3 TYR B 561 HIS B 562 1 O HIS B 562 N CYS B 451 SSBOND 1 CYS A 303 CYS A 311 1555 1555 2.89 SITE 1 AC1 20 PHE A 193 PRO A 197 ARG A 200 ASN A 291 SITE 2 AC1 20 ASN A 316 GLY A 317 ASP A 318 CYS A 366 SITE 3 AC1 20 GLY A 410 MET A 414 TYR A 415 GLN A 446 SITE 4 AC1 20 ILE A 447 TYR A 448 GLY A 449 SER A 556 SITE 5 AC1 20 HOH A 577 HOH A 626 HOH A 717 HOH A 822 SITE 1 AC2 22 PHE B 193 PRO B 197 ARG B 200 SER B 288 SITE 2 AC2 22 ASN B 291 ASN B 316 GLY B 317 ASP B 318 SITE 3 AC2 22 CYS B 366 SER B 368 LEU B 384 GLY B 410 SITE 4 AC2 22 MET B 414 TYR B 415 GLN B 446 ILE B 447 SITE 5 AC2 22 TYR B 448 GLY B 449 SER B 556 HOH B 605 SITE 6 AC2 22 HOH B 669 HOH B 720 CRYST1 86.855 106.417 127.195 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007862 0.00000