PDB Short entry for 3H5K HEADER HYDROLASE 22-APR-09 3H5K TITLE CRYSTAL STRUCTURE OF THE RIBOSOME INACTIVATING PROTEIN PDL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-INACTIVATING PROTEIN PD-L1/PD-L2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RRNA N-GLYCOSIDASE PD-L1/PD-L2; COMPND 5 EC: 3.2.2.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYTOLACCA DIOICA; SOURCE 3 ORGANISM_COMMON: BELLA SOMBRA TREE; SOURCE 4 ORGANISM_TAXID: 29725 KEYWDS PROTEIN, RIBOSOME INACTIVATION, DISULFIDE BOND, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, PLANT DEFENSE, PROTEIN SYNTHESIS INHIBITOR, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.RUGGIERO,A.DI MARO,V.SEVERINO,A.CHAMBERY,R.BERISIO REVDAT 3 29-JUL-20 3H5K 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 13-JUL-11 3H5K 1 VERSN REVDAT 1 13-OCT-09 3H5K 0 JRNL AUTH A.RUGGIERO,A.DI MARO,V.SEVERINO,A.CHAMBERY,R.BERISIO JRNL TITL CRYSTAL STRUCTURE OF PD-L1, A RIBOSOME INACTIVATING PROTEIN JRNL TITL 2 FROM PHYTOLACCA DIOICA L. LEAVES WITH THE PROPERTY TO INDUCE JRNL TITL 3 DNA CLEAVAGE JRNL REF BIOPOLYMERS V. 91 1135 2009 JRNL REFN ISSN 0006-3525 JRNL PMID 19452522 JRNL DOI 10.1002/BIP.21260 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 83817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 806 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.009 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.200 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86690 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, 24%(W/V) POLYETHYLENE GLYCOL 8000, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.50550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.36750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.50550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.36750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -1.45 -141.33 REMARK 500 THR A 93 -118.34 -65.41 REMARK 500 ASN A 117 47.28 -82.57 REMARK 500 VAL A 173 -73.04 -108.65 REMARK 500 CYS B 105 57.45 -110.74 REMARK 500 ASN B 117 41.36 -75.31 REMARK 500 VAL B 173 -71.65 -106.66 REMARK 500 LEU B 228 -165.28 -118.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QET RELATED DB: PDB REMARK 900 STRUCTURE OF THE MUTANT S211A OF THE RIBOSOME INACTIVATING PROTEIN REMARK 900 PDL4 FROM P. DIOICA IN COMPLEX WITH ADENINE REMARK 900 RELATED ID: 2Z4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD TYPE PD-L4 FROM PHYTOLACCA DIOICA LEAVES REMARK 900 RELATED ID: 2Z53 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE S211A MUTANT OF THE RIBOSOME INACTIVATING REMARK 900 PROTEIN PDL4 FROM P. DIOICA LEAVES DBREF 3H5K A 1 261 UNP P84853 RIPL1_PHYDI 1 261 DBREF 3H5K B 1 261 UNP P84853 RIPL1_PHYDI 1 261 SEQRES 1 A 261 ILE ASN THR ILE THR TYR ASP ALA GLY ASN THR THR ILE SEQRES 2 A 261 ASN LYS TYR ALA THR PHE MET GLU SER LEU ARG ASN GLU SEQRES 3 A 261 ALA LYS ASP PRO SER LEU GLN CYS TYR GLY ILE PRO MET SEQRES 4 A 261 LEU PRO ASN ASN SER SER THR ILE LYS TYR LEU LEU VAL SEQRES 5 A 261 LYS LEU GLN GLY ALA SER GLN LYS THR ILE THR LEU MET SEQRES 6 A 261 LEU ARG ARG ASN ASN LEU TYR VAL MET GLY TYR SER ASP SEQRES 7 A 261 PRO PHE ASN GLY ASN CYS ARG TYR HIS ILE PHE ASN ASP SEQRES 8 A 261 ILE THR GLY THR GLU ARG THR ASN VAL GLU ASN THR LEU SEQRES 9 A 261 CYS SER SER SER SER SER ARG ASP ALA LYS PRO ILE ASN SEQRES 10 A 261 TYR ASN SER LEU TYR SER THR LEU GLU LYS LYS ALA GLU SEQRES 11 A 261 VAL ASN SER ARG SER GLN VAL GLN LEU GLY ILE GLN ILE SEQRES 12 A 261 LEU SER SER ASP ILE GLY LYS ILE SER GLY GLN SER SER SEQRES 13 A 261 PHE THR ASP LYS THR GLU ALA LYS PHE LEU LEU VAL ALA SEQRES 14 A 261 ILE GLN MET VAL SER GLU ALA ALA ARG PHE LYS TYR ILE SEQRES 15 A 261 GLU ASN GLN VAL LYS THR ASN PHE ASN ARG ASP PHE SER SEQRES 16 A 261 PRO ASN ASP LYS ILE LEU ASP LEU GLU GLU ASN TRP GLY SEQRES 17 A 261 LYS ILE SER THR ALA ILE HIS ASP ALA THR ASN GLY ALA SEQRES 18 A 261 LEU PRO LYS PRO LEU GLU LEU LYS ASN ALA ASP GLY THR SEQRES 19 A 261 LYS TRP ILE VAL LEU ARG VAL ASP GLU ILE LYS PRO ASP SEQRES 20 A 261 MET GLY LEU LEU ASN TYR VAL ASN GLY THR CYS GLN THR SEQRES 21 A 261 THR SEQRES 1 B 261 ILE ASN THR ILE THR TYR ASP ALA GLY ASN THR THR ILE SEQRES 2 B 261 ASN LYS TYR ALA THR PHE MET GLU SER LEU ARG ASN GLU SEQRES 3 B 261 ALA LYS ASP PRO SER LEU GLN CYS TYR GLY ILE PRO MET SEQRES 4 B 261 LEU PRO ASN ASN SER SER THR ILE LYS TYR LEU LEU VAL SEQRES 5 B 261 LYS LEU GLN GLY ALA SER GLN LYS THR ILE THR LEU MET SEQRES 6 B 261 LEU ARG ARG ASN ASN LEU TYR VAL MET GLY TYR SER ASP SEQRES 7 B 261 PRO PHE ASN GLY ASN CYS ARG TYR HIS ILE PHE ASN ASP SEQRES 8 B 261 ILE THR GLY THR GLU ARG THR ASN VAL GLU ASN THR LEU SEQRES 9 B 261 CYS SER SER SER SER SER ARG ASP ALA LYS PRO ILE ASN SEQRES 10 B 261 TYR ASN SER LEU TYR SER THR LEU GLU LYS LYS ALA GLU SEQRES 11 B 261 VAL ASN SER ARG SER GLN VAL GLN LEU GLY ILE GLN ILE SEQRES 12 B 261 LEU SER SER ASP ILE GLY LYS ILE SER GLY GLN SER SER SEQRES 13 B 261 PHE THR ASP LYS THR GLU ALA LYS PHE LEU LEU VAL ALA SEQRES 14 B 261 ILE GLN MET VAL SER GLU ALA ALA ARG PHE LYS TYR ILE SEQRES 15 B 261 GLU ASN GLN VAL LYS THR ASN PHE ASN ARG ASP PHE SER SEQRES 16 B 261 PRO ASN ASP LYS ILE LEU ASP LEU GLU GLU ASN TRP GLY SEQRES 17 B 261 LYS ILE SER THR ALA ILE HIS ASP ALA THR ASN GLY ALA SEQRES 18 B 261 LEU PRO LYS PRO LEU GLU LEU LYS ASN ALA ASP GLY THR SEQRES 19 B 261 LYS TRP ILE VAL LEU ARG VAL ASP GLU ILE LYS PRO ASP SEQRES 20 B 261 MET GLY LEU LEU ASN TYR VAL ASN GLY THR CYS GLN THR SEQRES 21 B 261 THR MODRES 3H5K ASN A 10 ASN GLYCOSYLATION SITE MODRES 3H5K ASN B 10 ASN GLYCOSYLATION SITE HET NAG A 263 14 HET EDO A 264 4 HET NAG B 262 14 HET EDO B 265 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *806(H2 O) HELIX 1 1 THR A 12 LYS A 28 1 17 HELIX 2 2 ALA A 57 GLN A 59 5 3 HELIX 3 3 GLY A 94 CYS A 105 1 12 HELIX 4 4 LEU A 121 ALA A 129 1 9 HELIX 5 5 SER A 133 VAL A 137 5 5 HELIX 6 6 GLY A 140 SER A 152 1 13 HELIX 7 7 THR A 158 VAL A 173 1 16 HELIX 8 8 VAL A 173 PHE A 179 1 7 HELIX 9 9 PHE A 179 ASN A 189 1 11 HELIX 10 10 ASN A 197 ASP A 216 1 20 HELIX 11 11 VAL A 241 LYS A 245 1 5 HELIX 12 12 PRO A 246 MET A 248 5 3 HELIX 13 13 THR B 12 LYS B 28 1 17 HELIX 14 14 ALA B 57 GLN B 59 5 3 HELIX 15 15 THR B 93 CYS B 105 1 13 HELIX 16 16 LEU B 121 ALA B 129 1 9 HELIX 17 17 SER B 133 VAL B 137 5 5 HELIX 18 18 GLY B 140 SER B 152 1 13 HELIX 19 19 THR B 158 PHE B 179 1 22 HELIX 20 20 PHE B 179 ASN B 189 1 11 HELIX 21 21 ASN B 197 ALA B 217 1 21 HELIX 22 22 VAL B 241 LYS B 245 1 5 HELIX 23 23 PRO B 246 MET B 248 5 3 SHEET 1 A 6 THR A 3 ASP A 7 0 SHEET 2 A 6 TYR A 49 GLN A 55 1 O LYS A 53 N TYR A 6 SHEET 3 A 6 THR A 61 ARG A 67 -1 O ILE A 62 N LEU A 54 SHEET 4 A 6 VAL A 73 PHE A 80 -1 O MET A 74 N MET A 65 SHEET 5 A 6 ASN A 83 ILE A 88 -1 O HIS A 87 N TYR A 76 SHEET 6 A 6 ARG A 111 ALA A 113 1 O ASP A 112 N CYS A 84 SHEET 1 B 2 GLN A 33 CYS A 34 0 SHEET 2 B 2 ILE A 37 PRO A 38 -1 O ILE A 37 N CYS A 34 SHEET 1 C 2 ALA A 221 LYS A 229 0 SHEET 2 C 2 LYS A 235 ARG A 240 -1 O TRP A 236 N LEU A 228 SHEET 1 D 6 THR B 3 ASP B 7 0 SHEET 2 D 6 TYR B 49 GLN B 55 1 O LYS B 53 N TYR B 6 SHEET 3 D 6 THR B 61 ARG B 67 -1 O ILE B 62 N LEU B 54 SHEET 4 D 6 VAL B 73 PHE B 80 -1 O GLY B 75 N MET B 65 SHEET 5 D 6 ASN B 83 ILE B 88 -1 O HIS B 87 N TYR B 76 SHEET 6 D 6 ARG B 111 ALA B 113 1 O ASP B 112 N CYS B 84 SHEET 1 E 2 GLN B 33 CYS B 34 0 SHEET 2 E 2 ILE B 37 PRO B 38 -1 O ILE B 37 N CYS B 34 SHEET 1 F 2 ALA B 221 LYS B 229 0 SHEET 2 F 2 LYS B 235 ARG B 240 -1 O TRP B 236 N LEU B 228 SSBOND 1 CYS A 34 CYS A 258 1555 1555 2.05 SSBOND 2 CYS A 84 CYS A 105 1555 1555 2.05 SSBOND 3 CYS B 34 CYS B 258 1555 1555 2.06 SSBOND 4 CYS B 84 CYS B 105 1555 1555 2.05 LINK ND2 ASN A 10 C1 NAG A 263 1555 1555 1.44 LINK ND2 ASN B 10 C1 NAG B 262 1555 1555 1.44 CRYST1 161.011 34.735 120.630 90.00 127.99 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006211 0.000000 0.004850 0.00000 SCALE2 0.000000 0.028789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010518 0.00000