PDB Short entry for 3H5Q HEADER TRANSFERASE 22-APR-09 3H5Q TITLE CRYSTAL STRUCTURE OF A PUTATIVE PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYNP; COMPND 5 EC: 2.4.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: PDP, PYN, SACOL2128; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS STRUCTURAL GENOMICS, GLYCOSYLTRANSFERASE, TRANSFERASE, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,M.ZIMMERMAN,M.CYMBOROWSKI,T.SKARINA,O.ONOPRIYENKO, AUTHOR 2 W.F.ANDERSON,A.SAVCHENKO,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 4 13-APR-22 3H5Q 1 AUTHOR JRNL REVDAT 3 13-OCT-21 3H5Q 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3H5Q 1 VERSN REVDAT 1 26-MAY-09 3H5Q 0 JRNL AUTH I.A.SHUMILIN,M.ZIMMERMAN,M.CYMBOROWSKI,T.SKARINA, JRNL AUTH 2 O.ONOPRIYENKO,W.F.ANDERSON,A.SAVCHENKO,W.MINOR, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PYRIMIDINE-NUCLEOSIDE JRNL TITL 2 PHOSPHORYLASE FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 32390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3361 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2192 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4554 ; 1.696 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5451 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 5.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.138 ;26.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;13.234 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3733 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 567 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2170 ; 0.958 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 905 ; 0.289 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3501 ; 1.714 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 3.136 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1047 ; 5.135 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2480 0.0830 25.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0178 REMARK 3 T33: 0.1540 T12: -0.0036 REMARK 3 T13: 0.0458 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.2434 L22: 0.1618 REMARK 3 L33: 0.3895 L12: 0.0381 REMARK 3 L13: 0.0193 L23: -0.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0608 S13: -0.0001 REMARK 3 S21: 0.0564 S22: -0.0099 S23: -0.0026 REMARK 3 S31: 0.0249 S32: 0.0198 S33: 0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3H5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : 0.43600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M AMMONIUM SULFATE, 25% REMARK 280 PEG5K MME, 10MM THYMIDINE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 103.18200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 468 O HOH A 732 2.15 REMARK 500 OD1 ASP A 89 O HOH A 768 2.17 REMARK 500 O HOH A 708 O HOH A 788 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 406 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -176.13 67.24 REMARK 500 ASP A 89 83.09 -64.93 REMARK 500 ASP A 103 20.12 80.86 REMARK 500 SER A 110 -163.48 -124.52 REMARK 500 ARG A 112 -104.11 -108.92 REMARK 500 ASN A 156 48.21 -148.14 REMARK 500 THR A 158 58.84 38.54 REMARK 500 ASN A 249 -81.13 -112.61 REMARK 500 ALA A 418 -156.71 -156.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 436 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00692 RELATED DB: TARGETDB DBREF 3H5Q A 1 433 UNP Q5HE64 PDP_STAAC 1 433 SEQADV 3H5Q SER A -2 UNP Q5HE64 EXPRESSION TAG SEQADV 3H5Q ASN A -1 UNP Q5HE64 EXPRESSION TAG SEQADV 3H5Q ALA A 0 UNP Q5HE64 EXPRESSION TAG SEQADV 3H5Q VAL A 56 UNP Q5HE64 ALA 56 ENGINEERED MUTATION SEQRES 1 A 436 SER ASN ALA MSE ARG MSE ILE ASP ILE ILE GLU LYS LYS SEQRES 2 A 436 ARG ASP GLY HIS THR LEU THR THR GLU GLU ILE ASN PHE SEQRES 3 A 436 PHE ILE GLY GLY TYR VAL LYS GLY ASP ILE PRO ASP TYR SEQRES 4 A 436 GLN ALA SER SER LEU ALA MSE ALA ILE TYR PHE GLN ASP SEQRES 5 A 436 MSE ASN ASP ASP GLU ARG VAL ALA LEU THR MSE ALA MSE SEQRES 6 A 436 VAL ASN SER GLY ASP MSE ILE ASP LEU SER ASP ILE LYS SEQRES 7 A 436 GLY VAL LYS VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 436 ASP THR THR THR LEU VAL LEU ALA PRO LEU VAL ALA ALA SEQRES 9 A 436 VAL ASP VAL PRO VAL ALA LYS MSE SER GLY ARG GLY LEU SEQRES 10 A 436 GLY HIS THR GLY GLY THR ILE ASP LYS LEU GLU ALA ILE SEQRES 11 A 436 ASP GLY PHE HIS VAL GLU ILE ASP GLU ALA THR PHE VAL SEQRES 12 A 436 LYS LEU VAL ASN GLU ASN LYS VAL ALA VAL VAL GLY GLN SEQRES 13 A 436 SER GLY ASN LEU THR PRO ALA ASP LYS LYS LEU TYR ALA SEQRES 14 A 436 LEU ARG ASP VAL THR GLY THR VAL ASN SER ILE PRO LEU SEQRES 15 A 436 ILE ALA SER SER ILE MSE SER LYS LYS ILE ALA ALA GLY SEQRES 16 A 436 ALA ASP ALA ILE VAL LEU ASP VAL LYS THR GLY SER GLY SEQRES 17 A 436 ALA PHE MSE LYS THR LEU GLU ASP ALA GLU ALA LEU ALA SEQRES 18 A 436 HIS ALA MSE VAL ARG ILE GLY ASN ASN VAL GLY ARG ASN SEQRES 19 A 436 THR MSE ALA ILE ILE SER ASP MSE ASN GLN PRO LEU GLY SEQRES 20 A 436 ARG ALA ILE GLY ASN ALA LEU GLU LEU GLN GLU ALA ILE SEQRES 21 A 436 ASP THR LEU LYS GLY GLN GLY PRO LYS ASP LEU THR GLU SEQRES 22 A 436 LEU VAL LEU THR LEU GLY SER GLN MSE VAL VAL LEU ALA SEQRES 23 A 436 ASN LYS ALA GLU THR LEU GLU GLU ALA ARG ALA LEU LEU SEQRES 24 A 436 ILE GLU ALA ILE ASN SER GLY ALA ALA LEU GLU LYS PHE SEQRES 25 A 436 LYS THR PHE ILE LYS ASN GLN GLY GLY ASP GLU THR VAL SEQRES 26 A 436 ILE ASP HIS PRO GLU ARG LEU PRO GLN ALA GLN TYR GLN SEQRES 27 A 436 ILE GLU TYR LYS ALA LYS LYS SER GLY TYR VAL THR GLU SEQRES 28 A 436 LEU VAL SER ASN ASP ILE GLY VAL ALA SER MSE MSE LEU SEQRES 29 A 436 GLY ALA GLY ARG LEU THR LYS GLU ASP ASP ILE ASP LEU SEQRES 30 A 436 ALA VAL GLY ILE VAL LEU ASN LYS LYS ILE GLY ASP LYS SEQRES 31 A 436 VAL GLU GLU GLY GLU SER LEU LEU THR ILE HIS SER ASN SEQRES 32 A 436 ARG GLN ASP VAL ASP ASP VAL VAL LYS LYS LEU ASP SER SEQRES 33 A 436 SER ILE THR ILE ALA ASP HIS VAL VAL SER PRO THR LEU SEQRES 34 A 436 ILE HIS LYS ILE ILE THR GLU MODRES 3H5Q MSE A 1 MET SELENOMETHIONINE MODRES 3H5Q MSE A 3 MET SELENOMETHIONINE MODRES 3H5Q MSE A 43 MET SELENOMETHIONINE MODRES 3H5Q MSE A 50 MET SELENOMETHIONINE MODRES 3H5Q MSE A 60 MET SELENOMETHIONINE MODRES 3H5Q MSE A 62 MET SELENOMETHIONINE MODRES 3H5Q MSE A 68 MET SELENOMETHIONINE MODRES 3H5Q MSE A 109 MET SELENOMETHIONINE MODRES 3H5Q MSE A 185 MET SELENOMETHIONINE MODRES 3H5Q MSE A 208 MET SELENOMETHIONINE MODRES 3H5Q MSE A 221 MET SELENOMETHIONINE MODRES 3H5Q MSE A 233 MET SELENOMETHIONINE MODRES 3H5Q MSE A 239 MET SELENOMETHIONINE MODRES 3H5Q MSE A 279 MET SELENOMETHIONINE MODRES 3H5Q MSE A 359 MET SELENOMETHIONINE MODRES 3H5Q MSE A 360 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 3 8 HET MSE A 43 8 HET MSE A 50 8 HET MSE A 60 13 HET MSE A 62 8 HET MSE A 68 8 HET MSE A 109 8 HET MSE A 185 8 HET MSE A 208 8 HET MSE A 221 8 HET MSE A 233 8 HET MSE A 239 8 HET MSE A 279 8 HET MSE A 359 8 HET MSE A 360 8 HET THM A 434 17 HET SO4 A 435 5 HET SO4 A 436 5 HETNAM MSE SELENOMETHIONINE HETNAM THM THYMIDINE HETNAM SO4 SULFATE ION HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 THM C10 H14 N2 O5 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *406(H2 O) HELIX 1 1 SER A -2 ASP A 12 1 15 HELIX 2 2 THR A 17 LYS A 30 1 14 HELIX 3 3 PRO A 34 ASP A 49 1 16 HELIX 4 4 ASN A 51 ASN A 64 1 14 HELIX 5 5 THR A 90 VAL A 102 1 13 HELIX 6 6 GLY A 119 GLU A 125 1 7 HELIX 7 7 ASP A 135 LYS A 147 1 13 HELIX 8 8 THR A 158 VAL A 170 1 13 HELIX 9 9 SER A 176 ALA A 191 1 16 HELIX 10 10 THR A 210 GLY A 229 1 20 HELIX 11 11 ASN A 249 LYS A 261 1 13 HELIX 12 12 PRO A 265 ALA A 283 1 19 HELIX 13 13 THR A 288 SER A 302 1 15 HELIX 14 14 GLY A 303 GLN A 316 1 14 HELIX 15 15 GLU A 320 HIS A 325 1 6 HELIX 16 16 PRO A 326 LEU A 329 5 4 HELIX 17 17 VAL A 350 LEU A 361 1 12 HELIX 18 18 VAL A 404 SER A 414 1 11 SHEET 1 A 4 VAL A 79 SER A 83 0 SHEET 2 A 4 ALA A 195 THR A 202 1 O ASP A 199 N HIS A 82 SHEET 3 A 4 THR A 232 ASP A 238 1 O ILE A 235 N VAL A 200 SHEET 4 A 4 ILE A 427 ILE A 431 -1 O ILE A 431 N ALA A 234 SHEET 1 B 2 VAL A 106 MSE A 109 0 SHEET 2 B 2 VAL A 148 VAL A 151 1 O VAL A 151 N LYS A 108 SHEET 1 C 4 ALA A 246 GLY A 248 0 SHEET 2 C 4 GLY A 377 LEU A 380 -1 O ILE A 378 N ILE A 247 SHEET 3 C 4 SER A 393 SER A 399 -1 O HIS A 398 N GLY A 377 SHEET 4 C 4 TYR A 334 LYS A 339 -1 N TYR A 338 O LEU A 394 SHEET 1 D 3 LYS A 387 VAL A 388 0 SHEET 2 D 3 GLY A 344 LEU A 349 -1 N GLY A 344 O VAL A 388 SHEET 3 D 3 ILE A 415 ALA A 418 -1 O ALA A 418 N TYR A 345 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.32 LINK C ARG A 2 N MSE A 3 1555 1555 1.32 LINK C MSE A 3 N ILE A 4 1555 1555 1.35 LINK C ALA A 42 N MSE A 43 1555 1555 1.35 LINK C MSE A 43 N ALA A 44 1555 1555 1.35 LINK C ASP A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ASN A 51 1555 1555 1.32 LINK C THR A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N ALA A 61 1555 1555 1.35 LINK C ALA A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N VAL A 63 1555 1555 1.32 LINK C ASP A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N ILE A 69 1555 1555 1.34 LINK C LYS A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N SER A 110 1555 1555 1.33 LINK C ILE A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N SER A 186 1555 1555 1.32 LINK C PHE A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N LYS A 209 1555 1555 1.32 LINK C ALA A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N VAL A 222 1555 1555 1.35 LINK C THR A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N ALA A 234 1555 1555 1.31 LINK C ASP A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N ASN A 240 1555 1555 1.32 LINK C GLN A 278 N MSE A 279 1555 1555 1.32 LINK C MSE A 279 N VAL A 280 1555 1555 1.33 LINK C SER A 358 N MSE A 359 1555 1555 1.33 LINK C MSE A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N LEU A 361 1555 1555 1.33 SITE 1 AC1 7 TYR A 165 ARG A 168 ILE A 180 SER A 183 SITE 2 AC1 7 LYS A 187 PHE A 207 HOH A 698 SITE 1 AC2 8 ARG A 245 PRO A 265 LYS A 266 ASP A 267 SITE 2 AC2 8 HOH A 442 HOH A 538 HOH A 690 HOH A 756 SITE 1 AC3 6 THR A 92 LYS A 108 SER A 110 THR A 120 SITE 2 AC3 6 HOH A 616 HOH A 699 CRYST1 51.591 40.885 105.578 90.00 97.19 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019380 0.000000 0.002440 0.00000 SCALE2 0.000000 0.024460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009550 0.00000