PDB Short entry for 3H60 HEADER HYDROLASE 23-APR-09 3H60 TITLE CATALYTIC DOMAIN OF HUMAN SERINE/THREONINE PHOSPHATASE 5 (PP5C)WITH TITLE 2 TWO MN2+ ATOMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 176-490; COMPND 5 SYNONYM: PP5C, PP5, PROTEIN PHOSPHATASE T, PP-T, PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST30 KEYWDS METALLOENZYMES, PHOSPHATASE, CYTOPLASM, HYDROLASE, IRON, MANGANESE, KEYWDS 2 METAL-BINDING, NUCLEUS, PROTEIN PHOSPHATASE, TPR REPEAT EXPDTA X-RAY DIFFRACTION AUTHOR I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI REVDAT 2 01-NOV-23 3H60 1 REMARK LINK REVDAT 1 29-SEP-09 3H60 0 JRNL AUTH I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI JRNL TITL STRUCTURAL BASIS OF SERINE/THREONINE PHOSPHATASE INHIBITION JRNL TITL 2 BY THE ARCHETYPAL SMALL MOLECULES CANTHARIDIN AND JRNL TITL 3 NORCANTHARIDIN JRNL REF J.MED.CHEM. V. 52 4838 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19601647 JRNL DOI 10.1021/JM900610K REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5184 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7012 ; 1.830 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 6.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.922 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;15.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3986 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3132 ; 1.189 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5064 ; 2.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2052 ; 3.474 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1948 ; 5.660 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.89225 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 65.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1S95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS-HCL, MPD 40%, PEG MME 5000 REMARK 280 20%, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.20700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.87750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.20700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.87750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG A 441 O HOH A 628 1.89 REMARK 500 CG ARG B 441 O HOH B 600 2.01 REMARK 500 OE1 GLN A 311 OE1 GLU A 316 2.04 REMARK 500 NE ARG A 441 O HOH A 628 2.08 REMARK 500 CG1 ILE B 267 O HOH B 598 2.12 REMARK 500 CD1 ILE B 267 O HOH B 598 2.17 REMARK 500 OD2 ASP A 364 NZ LYS A 368 2.19 REMARK 500 O HOH B 525 O HOH B 594 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 358 CB GLU A 358 CG 0.138 REMARK 500 GLU A 358 CG GLU A 358 CD 0.166 REMARK 500 GLU A 370 CB GLU A 370 CG 0.114 REMARK 500 GLU A 370 CG GLU A 370 CD 0.098 REMARK 500 VAL A 402 CB VAL A 402 CG2 -0.128 REMARK 500 GLU B 358 CB GLU B 358 CG 0.168 REMARK 500 GLU B 358 CG GLU B 358 CD 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 371 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 371 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 PRO A 380 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 441 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 441 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP B 409 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 441 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 441 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 269 58.17 -96.01 REMARK 500 ASP A 274 151.60 81.57 REMARK 500 ARG A 275 -61.41 70.12 REMARK 500 GLU A 305 53.54 -98.42 REMARK 500 TYR A 323 -111.00 -134.48 REMARK 500 LEU A 355 -158.87 -97.21 REMARK 500 SER A 403 -151.81 60.79 REMARK 500 SER A 426 -124.40 -126.91 REMARK 500 HIS A 427 -22.31 81.12 REMARK 500 ASP A 468 96.17 -166.81 REMARK 500 ASP B 183 44.61 73.15 REMARK 500 ASN B 269 55.48 -95.44 REMARK 500 ASP B 274 155.95 77.36 REMARK 500 ARG B 275 -61.60 71.39 REMARK 500 GLU B 305 56.10 -91.20 REMARK 500 TYR B 323 -121.21 -133.92 REMARK 500 SER B 403 -150.70 60.41 REMARK 500 SER B 426 -120.32 -127.75 REMARK 500 HIS B 427 -24.04 75.18 REMARK 500 ASN B 450 53.99 37.63 REMARK 500 ASP B 453 12.89 58.13 REMARK 500 ASP B 468 113.51 -164.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 21 O REMARK 620 2 ASP A 242 OD2 92.5 REMARK 620 3 ASP A 271 OD2 166.1 98.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 ASN A 303 OD1 95.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 89 O REMARK 620 2 ASP B 242 OD2 97.2 REMARK 620 3 ASP B 271 OD2 167.4 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 271 OD2 REMARK 620 2 ASN B 303 OD1 98.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H61 RELATED DB: PDB REMARK 900 RELATED ID: 3H62 RELATED DB: PDB REMARK 900 RELATED ID: 3H63 RELATED DB: PDB REMARK 900 RELATED ID: 3H64 RELATED DB: PDB REMARK 900 RELATED ID: 3H66 RELATED DB: PDB REMARK 900 RELATED ID: 3H67 RELATED DB: PDB REMARK 900 RELATED ID: 3H68 RELATED DB: PDB REMARK 900 RELATED ID: 3H69 RELATED DB: PDB DBREF 3H60 A 176 490 UNP P53041 PPP5_HUMAN 176 490 DBREF 3H60 B 176 490 UNP P53041 PPP5_HUMAN 176 490 SEQRES 1 A 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 A 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 A 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 A 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 A 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 A 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 A 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 A 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 A 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 A 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 A 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 A 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 A 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 A 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 A 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 A 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 A 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 A 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 A 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 A 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 A 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 A 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 A 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 A 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 A 315 ALA TYR ALA SEQRES 1 B 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 B 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 B 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 B 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 B 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 B 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 B 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 B 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 B 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 B 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 B 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 B 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 B 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 B 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 B 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 B 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 B 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 B 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 B 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 B 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 B 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 B 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 B 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 B 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 B 315 ALA TYR ALA HET MN A 500 1 HET MN A 501 1 HET MN B 500 1 HET MN B 501 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *432(H2 O) HELIX 1 1 THR A 187 ASP A 200 1 14 HELIX 2 2 HIS A 205 LYS A 222 1 18 HELIX 3 3 GLN A 246 GLY A 258 1 13 HELIX 4 4 PHE A 278 TYR A 293 1 16 HELIX 5 5 THR A 306 GLY A 314 1 9 HELIX 6 6 GLY A 314 TYR A 323 1 10 HELIX 7 7 THR A 324 GLU A 336 1 13 HELIX 8 8 THR A 362 ILE A 369 1 8 HELIX 9 9 GLY A 379 SER A 387 1 9 HELIX 10 10 GLY A 407 ASN A 419 1 13 HELIX 11 11 HIS A 438 GLY A 440 5 3 HELIX 12 12 ASN A 450 GLN A 454 5 5 HELIX 13 13 THR B 187 ASP B 200 1 14 HELIX 14 14 HIS B 205 LYS B 222 1 18 HELIX 15 15 GLN B 246 GLY B 258 1 13 HELIX 16 16 PHE B 278 TYR B 293 1 16 HELIX 17 17 THR B 306 GLY B 314 1 9 HELIX 18 18 GLY B 314 TYR B 323 1 10 HELIX 19 19 THR B 324 GLU B 336 1 13 HELIX 20 20 THR B 362 ILE B 369 1 8 HELIX 21 21 GLY B 379 SER B 387 1 9 HELIX 22 22 GLY B 407 ASN B 419 1 13 HELIX 23 23 HIS B 438 GLY B 440 5 3 HELIX 24 24 ASN B 450 GLN B 454 5 5 SHEET 1 A 6 LEU A 226 THR A 229 0 SHEET 2 A 6 ALA A 341 ILE A 344 1 O CYS A 343 N VAL A 227 SHEET 3 A 6 VAL A 348 MET A 351 -1 O ILE A 350 N GLN A 342 SHEET 4 A 6 TYR A 422 ARG A 425 1 O ILE A 424 N LEU A 349 SHEET 5 A 6 CYS A 442 VAL A 445 1 O VAL A 443 N ARG A 425 SHEET 6 A 6 TYR A 434 ALA A 437 -1 N ALA A 437 O CYS A 442 SHEET 1 B 5 PHE A 297 LEU A 300 0 SHEET 2 B 5 TYR A 266 ASN A 269 1 N PHE A 268 O HIS A 298 SHEET 3 B 5 LYS A 236 CYS A 240 1 N CYS A 240 O ILE A 267 SHEET 4 B 5 ALA A 459 GLN A 465 -1 O ILE A 462 N VAL A 239 SHEET 5 B 5 ASP A 468 PHE A 476 -1 O HIS A 474 N TYR A 461 SHEET 1 C 3 ASP A 388 PRO A 389 0 SHEET 2 C 3 CYS A 404 PHE A 406 1 O PHE A 406 N ASP A 388 SHEET 3 C 3 ARG A 395 ILE A 397 -1 N SER A 396 O GLN A 405 SHEET 1 D 6 LEU B 226 THR B 229 0 SHEET 2 D 6 ALA B 341 ILE B 344 1 O CYS B 343 N THR B 229 SHEET 3 D 6 VAL B 348 MET B 351 -1 O ILE B 350 N GLN B 342 SHEET 4 D 6 TYR B 422 ARG B 425 1 O ILE B 424 N LEU B 349 SHEET 5 D 6 CYS B 442 VAL B 445 1 O VAL B 443 N ARG B 425 SHEET 6 D 6 TYR B 434 ALA B 437 -1 N ALA B 437 O CYS B 442 SHEET 1 E 5 PHE B 297 LEU B 300 0 SHEET 2 E 5 TYR B 266 ASN B 269 1 N PHE B 268 O HIS B 298 SHEET 3 E 5 LYS B 236 CYS B 240 1 N CYS B 240 O ILE B 267 SHEET 4 E 5 ALA B 459 GLN B 465 -1 O ILE B 462 N VAL B 239 SHEET 5 E 5 ASP B 468 PHE B 476 -1 O HIS B 474 N TYR B 461 SHEET 1 F 3 ASP B 388 PRO B 389 0 SHEET 2 F 3 CYS B 404 PHE B 406 1 O PHE B 406 N ASP B 388 SHEET 3 F 3 ARG B 395 ILE B 397 -1 N SER B 396 O GLN B 405 LINK O HOH A 21 MN MN A 501 1555 1555 2.25 LINK OD2 ASP A 242 MN MN A 501 1555 1555 1.95 LINK OD2 ASP A 271 MN MN A 500 1555 1555 2.41 LINK OD2 ASP A 271 MN MN A 501 1555 1555 2.07 LINK OD1 ASN A 303 MN MN A 500 1555 1555 2.05 LINK O HOH B 89 MN MN B 501 1555 1555 2.16 LINK OD2 ASP B 242 MN MN B 501 1555 1555 1.99 LINK OD2 ASP B 271 MN MN B 500 1555 1555 2.38 LINK OD2 ASP B 271 MN MN B 501 1555 1555 2.05 LINK OD1 ASN B 303 MN MN B 500 1555 1555 2.02 SITE 1 AC1 5 ASP A 271 ASN A 303 HIS A 352 HIS A 427 SITE 2 AC1 5 MN A 501 SITE 1 AC2 5 HOH A 21 ASP A 242 HIS A 244 ASP A 271 SITE 2 AC2 5 MN A 500 SITE 1 AC3 5 ASP B 271 ASN B 303 HIS B 352 HIS B 427 SITE 2 AC3 5 MN B 501 SITE 1 AC4 5 HOH B 89 ASP B 242 HIS B 244 ASP B 271 SITE 2 AC4 5 MN B 500 CRYST1 154.414 41.755 105.432 90.00 97.07 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006476 0.000000 0.000804 0.00000 SCALE2 0.000000 0.023949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009557 0.00000