PDB Short entry for 3HDM HEADER TRANSFERASE 07-MAY-09 3HDM TITLE CRYSTAL STRUCTURE OF SERUM AND GLUCOCORTICOID-REGULATED KINASE 1 IN TITLE 2 COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE SGK1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERUM/GLUCOCORTICOID-REGULATED KINASE 1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SGK, SGK1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: GATWAY GST TAGGED EXPRESSION VECTOR KEYWDS AGC PROTEIN KINASE, APOPTOSIS, ATP-BINDING, ENDOPLASMIC RETICULUM, KEYWDS 2 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHORYLATION, SERINE/THREONINE- KEYWDS 3 PROTEIN KINASE, TRANSFERASE, KINASE, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,M.HAMMOND REVDAT 4 13-OCT-21 3HDM 1 REMARK SEQADV REVDAT 3 13-JUL-11 3HDM 1 VERSN REVDAT 2 28-JUL-09 3HDM 1 JRNL REVDAT 1 30-JUN-09 3HDM 0 JRNL AUTH M.HAMMOND,D.G.WASHBURN,H.T.HOANG,S.MANNS,J.S.FRAZEE, JRNL AUTH 2 H.NAKAMURA,J.R.PATTERSON,W.TRIZNA,C.WU,L.M.AZZARANO, JRNL AUTH 3 R.NAGILLA,M.NORD,R.TREJO,M.S.HEAD,B.ZHAO,A.M.SMALLWOOD, JRNL AUTH 4 K.HIGHTOWER,N.J.LAPING,C.G.SCHNACKENBERG,S.K.THOMPSON JRNL TITL DESIGN AND SYNTHESIS OF ORALLY BIOAVAILABLE SERUM AND JRNL TITL 2 GLUCOCORTICOID-REGULATED KINASE 1 (SGK1) INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 19 4441 2009 JRNL REFN ISSN 0960-894X JRNL PMID 19497745 JRNL DOI 10.1016/J.BMCL.2009.05.051 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 10407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -2.04000 REMARK 3 B12 (A**2) : 0.68000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.856 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.349 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2361 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3209 ; 1.020 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 5.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;37.838 ;23.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;13.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1855 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 935 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1579 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1467 ; 0.326 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2288 ; 0.584 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1021 ; 0.597 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 921 ; 0.912 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0432 43.7136 70.9606 REMARK 3 T TENSOR REMARK 3 T11: 0.4628 T22: 0.0263 REMARK 3 T33: -0.0435 T12: -0.2303 REMARK 3 T13: 0.0409 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.3513 L22: 7.1848 REMARK 3 L33: 5.9798 L12: 1.5092 REMARK 3 L13: -0.9775 L23: -1.3553 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: 0.7197 S13: 0.5366 REMARK 3 S21: -1.2382 S22: 0.1279 S23: -0.1401 REMARK 3 S31: -0.6105 S32: 0.3002 S33: -0.2145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2626 23.2676 75.3443 REMARK 3 T TENSOR REMARK 3 T11: -0.1018 T22: -0.3239 REMARK 3 T33: -0.1425 T12: 0.0580 REMARK 3 T13: -0.0794 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 3.9876 L22: 2.2577 REMARK 3 L33: 4.9125 L12: 0.3321 REMARK 3 L13: 0.5326 L23: 1.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: 0.0145 S13: -0.2528 REMARK 3 S21: -0.1402 S22: -0.1627 S23: 0.1396 REMARK 3 S31: -0.5832 S32: 0.0624 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7433 32.9616 68.4380 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: 0.0067 REMARK 3 T33: -0.0164 T12: -0.0773 REMARK 3 T13: 0.0824 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 18.5060 L22: 38.8050 REMARK 3 L33: 37.1296 L12: 24.4439 REMARK 3 L13: 26.0384 L23: 32.6006 REMARK 3 S TENSOR REMARK 3 S11: 0.2702 S12: 1.5697 S13: -2.8653 REMARK 3 S21: -0.2064 S22: 2.9465 S23: 1.4456 REMARK 3 S31: -0.7838 S32: -2.3119 S33: -3.2167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.51267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.25633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.38450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.12817 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 125.64083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.51267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 50.25633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.12817 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.38450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 125.64083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 ILE A 60 REMARK 465 SER A 61 REMARK 465 GLN A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 PRO A 66 REMARK 465 GLU A 67 REMARK 465 LEU A 68 REMARK 465 MET A 69 REMARK 465 ASN A 70 REMARK 465 ALA A 71 REMARK 465 ASN A 72 REMARK 465 PRO A 73 REMARK 465 ALA A 74 REMARK 465 PRO A 75 REMARK 465 PRO A 76 REMARK 465 PRO A 77 REMARK 465 ALA A 78 REMARK 465 PRO A 79 REMARK 465 SER A 80 REMARK 465 LYS A 136 REMARK 465 LYS A 137 REMARK 465 LYS A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 HIS A 142 REMARK 465 ILE A 143 REMARK 465 MET A 144 REMARK 465 SER A 145 REMARK 465 GLU A 146 REMARK 465 ARG A 147 REMARK 465 ASN A 148 REMARK 465 PRO A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 LEU A 382 REMARK 465 ARG A 383 REMARK 465 HIS A 384 REMARK 465 PHE A 385 REMARK 465 ASP A 386 REMARK 465 PRO A 387 REMARK 465 GLU A 388 REMARK 465 PHE A 389 REMARK 465 THR A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 PRO A 393 REMARK 465 VAL A 394 REMARK 465 PRO A 395 REMARK 465 ASN A 396 REMARK 465 ALA A 397 REMARK 465 ILE A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 PRO A 402 REMARK 465 ASP A 403 REMARK 465 SER A 404 REMARK 465 VAL A 405 REMARK 465 LEU A 406 REMARK 465 VAL A 407 REMARK 465 THR A 408 REMARK 465 ALA A 409 REMARK 465 SER A 410 REMARK 465 VAL A 411 REMARK 465 LYS A 412 REMARK 465 GLU A 413 REMARK 465 ALA A 414 REMARK 465 ALA A 415 REMARK 465 GLU A 416 REMARK 465 ALA A 417 REMARK 465 PHE A 418 REMARK 465 LEU A 419 REMARK 465 GLY A 420 REMARK 465 PHE A 421 REMARK 465 SER A 422 REMARK 465 TYR A 423 REMARK 465 ALA A 424 REMARK 465 PRO A 425 REMARK 465 PRO A 426 REMARK 465 THR A 427 REMARK 465 ASP A 428 REMARK 465 SER A 429 REMARK 465 PHE A 430 REMARK 465 LEU A 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 VAL A 149 CG1 CG2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 SER A 377 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 101 -63.28 -91.61 REMARK 500 LYS A 132 35.74 -74.99 REMARK 500 HIS A 156 142.09 -170.26 REMARK 500 THR A 168 -161.24 -114.62 REMARK 500 ARG A 192 -52.58 69.02 REMARK 500 ARG A 221 -53.42 84.66 REMARK 500 ASP A 222 46.03 -144.85 REMARK 500 ASP A 344 12.14 -143.67 REMARK 500 ASP A 345 -124.94 54.87 REMARK 500 ASN A 375 32.86 -73.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMG A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HDN RELATED DB: PDB DBREF 3HDM A 60 431 UNP O00141 SGK1_HUMAN 60 431 SEQADV 3HDM GLY A 59 UNP O00141 EXPRESSION TAG SEQADV 3HDM ALA A 74 UNP O00141 SER 74 ENGINEERED MUTATION SEQADV 3HDM ALA A 78 UNP O00141 SER 78 ENGINEERED MUTATION SEQADV 3HDM ALA A 397 UNP O00141 SER 397 ENGINEERED MUTATION SEQADV 3HDM ALA A 401 UNP O00141 SER 401 ENGINEERED MUTATION SEQRES 1 A 373 GLY ILE SER GLN PRO GLN GLU PRO GLU LEU MET ASN ALA SEQRES 2 A 373 ASN PRO ALA PRO PRO PRO ALA PRO SER GLN GLN ILE ASN SEQRES 3 A 373 LEU GLY PRO SER SER ASN PRO HIS ALA LYS PRO SER ASP SEQRES 4 A 373 PHE HIS PHE LEU LYS VAL ILE GLY LYS GLY SER PHE GLY SEQRES 5 A 373 LYS VAL LEU LEU ALA ARG HIS LYS ALA GLU GLU VAL PHE SEQRES 6 A 373 TYR ALA VAL LYS VAL LEU GLN LYS LYS ALA ILE LEU LYS SEQRES 7 A 373 LYS LYS GLU GLU LYS HIS ILE MET SER GLU ARG ASN VAL SEQRES 8 A 373 LEU LEU LYS ASN VAL LYS HIS PRO PHE LEU VAL GLY LEU SEQRES 9 A 373 HIS PHE SER PHE GLN THR ALA ASP LYS LEU TYR PHE VAL SEQRES 10 A 373 LEU ASP TYR ILE ASN GLY GLY GLU LEU PHE TYR HIS LEU SEQRES 11 A 373 GLN ARG GLU ARG CYS PHE LEU GLU PRO ARG ALA ARG PHE SEQRES 12 A 373 TYR ALA ALA GLU ILE ALA SER ALA LEU GLY TYR LEU HIS SEQRES 13 A 373 SER LEU ASN ILE VAL TYR ARG ASP LEU LYS PRO GLU ASN SEQRES 14 A 373 ILE LEU LEU ASP SER GLN GLY HIS ILE VAL LEU THR ASP SEQRES 15 A 373 PHE GLY LEU CYS LYS GLU ASN ILE GLU HIS ASN SER THR SEQRES 16 A 373 THR SER THR PHE CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 373 GLU VAL LEU HIS LYS GLN PRO TYR ASP ARG THR VAL ASP SEQRES 18 A 373 TRP TRP CYS LEU GLY ALA VAL LEU TYR GLU MET LEU TYR SEQRES 19 A 373 GLY LEU PRO PRO PHE TYR SER ARG ASN THR ALA GLU MET SEQRES 20 A 373 TYR ASP ASN ILE LEU ASN LYS PRO LEU GLN LEU LYS PRO SEQRES 21 A 373 ASN ILE THR ASN SER ALA ARG HIS LEU LEU GLU GLY LEU SEQRES 22 A 373 LEU GLN LYS ASP ARG THR LYS ARG LEU GLY ALA LYS ASP SEQRES 23 A 373 ASP PHE MET GLU ILE LYS SER HIS VAL PHE PHE SER LEU SEQRES 24 A 373 ILE ASN TRP ASP ASP LEU ILE ASN LYS LYS ILE THR PRO SEQRES 25 A 373 PRO PHE ASN PRO ASN VAL SER GLY PRO ASN ASP LEU ARG SEQRES 26 A 373 HIS PHE ASP PRO GLU PHE THR GLU GLU PRO VAL PRO ASN SEQRES 27 A 373 ALA ILE GLY LYS ALA PRO ASP SER VAL LEU VAL THR ALA SEQRES 28 A 373 SER VAL LYS GLU ALA ALA GLU ALA PHE LEU GLY PHE SER SEQRES 29 A 373 TYR ALA PRO PRO THR ASP SER PHE LEU HET MMG A 500 24 HETNAM MMG 4-(5-PHENYL-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)BENZOIC ACID FORMUL 2 MMG C20 H14 N2 O2 FORMUL 3 HOH *8(H2 O) HELIX 1 1 LYS A 94 SER A 96 5 3 HELIX 2 2 LYS A 132 ILE A 134 5 3 HELIX 3 3 GLU A 183 ARG A 190 1 8 HELIX 4 4 LEU A 195 LEU A 216 1 22 HELIX 5 5 LYS A 224 GLU A 226 5 3 HELIX 6 6 CYS A 244 ILE A 248 5 5 HELIX 7 7 ALA A 265 HIS A 270 1 6 HELIX 8 8 ASP A 275 GLY A 293 1 19 HELIX 9 9 ASN A 301 LYS A 312 1 12 HELIX 10 10 THR A 321 LEU A 332 1 12 HELIX 11 11 ASP A 345 SER A 351 1 7 HELIX 12 12 HIS A 352 SER A 356 5 5 HELIX 13 13 ASN A 359 ASN A 365 1 7 SHEET 1 A 5 PHE A 98 GLY A 105 0 SHEET 2 A 5 LYS A 111 HIS A 117 -1 O ARG A 116 N HIS A 99 SHEET 3 A 5 PHE A 123 GLN A 130 -1 O TYR A 124 N ALA A 115 SHEET 4 A 5 LYS A 171 ASP A 177 -1 O LEU A 172 N LEU A 129 SHEET 5 A 5 LEU A 162 GLN A 167 -1 N HIS A 163 O VAL A 175 SHEET 1 B 2 ILE A 228 LEU A 230 0 SHEET 2 B 2 ILE A 236 LEU A 238 -1 O VAL A 237 N LEU A 229 SSBOND 1 CYS A 193 CYS A 258 1555 12555 2.75 SITE 1 AC1 10 ILE A 104 GLY A 107 VAL A 112 ALA A 125 SITE 2 AC1 10 LYS A 127 LEU A 176 ASP A 177 ILE A 179 SITE 3 AC1 10 GLU A 183 THR A 239 CRYST1 96.978 96.978 150.769 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010312 0.005953 0.000000 0.00000 SCALE2 0.000000 0.011907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006633 0.00000