PDB Short entry for 3HP6 HEADER TRANSFERASE/DNA 03-JUN-09 3HP6 TITLE CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS F710Y MUTANT BOUND TO G:T MISMATCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, LARGE FRAGMENT; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 297-876; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3'; COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3'; COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: DPO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE DNA TEMPLATE STRAND; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE DNA PRIMER STRAND KEYWDS PROTEIN-DNA COMPLEX, DNA POLYMERASE I, DNA REPLICATION, DNA-BINDING, KEYWDS 2 DNA-DIRECTED DNA POLYMERASE, HYDROLASE, NUCLEASE, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU,L.S.BEESE REVDAT 6 06-SEP-23 3HP6 1 REMARK REVDAT 5 13-OCT-21 3HP6 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3HP6 1 COMPND REMARK DBREF HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 01-NOV-17 3HP6 1 REMARK REVDAT 2 29-JUN-11 3HP6 1 JRNL REVDAT 1 23-JUN-10 3HP6 0 JRNL AUTH E.Y.WU,L.S.BEESE JRNL TITL THE STRUCTURE OF A HIGH FIDELITY DNA POLYMERASE BOUND TO A JRNL TITL 2 MISMATCHED NUCLEOTIDE REVEALS AN "AJAR" INTERMEDIATE JRNL TITL 3 CONFORMATION IN THE NUCLEOTIDE SELECTION MECHANISM. JRNL REF J.BIOL.CHEM. V. 286 19758 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454515 JRNL DOI 10.1074/JBC.M110.191130 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 139376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 6014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 505 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9312 REMARK 3 NUCLEIC ACID ATOMS : 848 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 869 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10620 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14559 ; 1.455 ; 2.089 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1180 ; 5.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 462 ;33.434 ;24.134 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1768 ;14.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 78 ;15.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1634 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7652 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5832 ; 0.769 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9419 ; 1.425 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4788 ; 2.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5130 ; 3.601 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY. REMARK 4 REMARK 4 3HP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 42.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2HVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 0.1M REMARK 280 MES, 2.5% V/V MPD, 10MM MAGNESIUM SULFATE, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A COMPLEX OF ENZYME AND DNA. THERE REMARK 300 ARE TWO BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAINS A,B,C AND REMARK 300 CHAINS D,E,F). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG D 200 O2B D3T D 202 1.70 REMARK 500 O HOH D 1137 O HOH D 1138 2.17 REMARK 500 NH2 ARG D 466 O HOH D 887 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 26 O3' DA E 26 C3' -0.036 REMARK 500 DG E 28 O3' DDG E 29 P 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 24 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT B 24 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC B 25 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA B 26 O4' - C1' - N9 ANGL. DEV. = 9.8 DEGREES REMARK 500 DC B 27 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC B 27 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 DC B 27 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG B 28 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA C 1 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 9 O5' - P - OP2 ANGL. DEV. = -6.4 DEGREES REMARK 500 DT C 10 C1' - O4' - C4' ANGL. DEV. = -7.2 DEGREES REMARK 500 DT C 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 25 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC E 25 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DC E 25 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA E 26 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC E 27 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG E 28 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F 1 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 2 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC F 4 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DT F 7 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA F 9 O5' - P - OP2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 64.61 62.98 REMARK 500 ASP A 402 102.72 -165.55 REMARK 500 ALA A 421 32.19 -81.21 REMARK 500 ILE A 588 -67.32 -107.43 REMARK 500 ILE A 628 -30.25 -145.39 REMARK 500 HIS A 829 -53.60 70.24 REMARK 500 ASP D 402 95.86 -160.54 REMARK 500 ALA D 421 48.12 -90.11 REMARK 500 LEU D 477 -72.80 -117.41 REMARK 500 GLU D 540 -62.27 -109.25 REMARK 500 LEU D 610 -54.99 -123.80 REMARK 500 ILE D 628 -27.28 -148.03 REMARK 500 HIS D 768 23.40 81.03 REMARK 500 HIS D 829 -51.68 74.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 D3T A 201 O2A REMARK 620 2 D3T A 201 O2B 91.6 REMARK 620 3 D3T A 201 O2G 88.4 94.3 REMARK 620 4 HOH A 249 O 89.3 101.2 164.4 REMARK 620 5 HOH A 930 O 177.4 91.0 91.0 90.6 REMARK 620 6 HOH A1064 O 86.8 175.7 81.7 82.8 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 147 O REMARK 620 2 HOH D 161 O 87.2 REMARK 620 3 D3T D 202 O2A 81.8 89.3 REMARK 620 4 D3T D 202 O1G 84.5 171.4 87.6 REMARK 620 5 HOH D 945 O 90.1 88.3 171.7 93.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HPO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I Y714S REMARK 900 MUTANT IN AJAR CONFORMATION BOUND TO G:T MISMATCH REMARK 900 RELATED ID: 3HT3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I V713P REMARK 900 MUTANT BOUND TO G:DCTP DBREF 3HP6 A 297 876 PDB 3HP6 3HP6 297 876 DBREF 3HP6 D 297 876 PDB 3HP6 3HP6 297 876 DBREF 3HP6 B 21 29 PDB 3HP6 3HP6 21 29 DBREF 3HP6 C 1 12 PDB 3HP6 3HP6 1 12 DBREF 3HP6 E 21 29 PDB 3HP6 3HP6 21 29 DBREF 3HP6 F 1 12 PDB 3HP6 3HP6 1 12 SEQADV 3HP6 ALA A 598 PDB 3HP6 ASP 598 ENGINEERED MUTATION SEQADV 3HP6 TYR A 710 PDB 3HP6 PHE 710 ENGINEERED MUTATION SEQADV 3HP6 ALA D 598 PDB 3HP6 ASP 598 ENGINEERED MUTATION SEQADV 3HP6 TYR D 710 PDB 3HP6 PHE 710 ENGINEERED MUTATION SEQRES 1 A 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 A 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 A 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 A 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 A 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 A 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 A 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 A 580 CME GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 A 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 A 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 A 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 A 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 A 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 A 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 A 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 A 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 A 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 A 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 A 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 A 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 A 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 A 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 A 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 A 580 ARG PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 A 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 A 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 A 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 A 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 A 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 A 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 A 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 A 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE SEQRES 33 A 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 A 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 A 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 A 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 A 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 A 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 A 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 A 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 A 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 A 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 A 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 A 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 A 580 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 D 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 D 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 D 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 D 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 D 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 D 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 D 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 D 580 CME GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 D 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 D 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 D 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 D 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 D 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 D 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 D 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 D 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 D 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 D 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 D 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 D 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 D 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 D 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 D 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 D 580 ARG PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 D 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 D 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 D 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 D 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 D 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 D 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 D 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 D 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE SEQRES 33 D 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 D 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 D 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 D 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 D 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 D 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 D 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 D 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 D 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 D 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 D 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 D 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 D 580 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DG DA DT DC DA DC DG DDG SEQRES 1 C 12 DA DC DG DC DC DG DT DG DA DT DC DG SEQRES 1 E 9 DC DG DA DT DC DA DC DG DDG SEQRES 1 F 12 DA DC DG DC DC DG DT DG DA DT DC DG MODRES 3HP6 CME A 388 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3HP6 CME D 388 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3HP6 DDG B 29 DG MODRES 3HP6 DDG E 29 DG HET CME A 388 10 HET CME D 388 10 HET DDG B 29 21 HET DDG E 29 21 HET GLC G 1 11 HET FRU G 2 12 HET GLC H 1 11 HET FRU H 2 12 HET SO4 A 2 5 HET MG A 200 1 HET D3T A 201 28 HET SO4 D 1 5 HET MG D 200 1 HET D3T D 202 28 HET SO4 D 878 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 DDG 2(C10 H14 N5 O6 P) FORMUL 7 GLC 2(C6 H12 O6) FORMUL 7 FRU 2(C6 H12 O6) FORMUL 9 SO4 3(O4 S 2-) FORMUL 10 MG 2(MG 2+) FORMUL 11 D3T 2(C10 H17 N2 O13 P3) FORMUL 16 HOH *869(H2 O) HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 GLU A 476 1 7 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 LEU A 564 1 8 HELIX 16 16 GLU A 569 THR A 586 1 18 HELIX 17 17 ILE A 588 VAL A 595 1 8 HELIX 18 18 LEU A 630 LYS A 635 1 6 HELIX 19 19 ILE A 636 GLN A 638 5 3 HELIX 20 20 GLN A 656 GLU A 667 1 12 HELIX 21 21 ASP A 668 ARG A 677 1 10 HELIX 22 22 ASP A 680 PHE A 690 1 11 HELIX 23 23 SER A 693 VAL A 697 5 5 HELIX 24 24 THR A 698 TYR A 710 1 13 HELIX 25 25 GLY A 711 GLY A 715 5 5 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 HELIX 32 32 THR D 308 ALA D 313 5 6 HELIX 33 33 ARG D 347 LEU D 352 1 6 HELIX 34 34 ASP D 354 ASP D 363 1 10 HELIX 35 35 ASP D 372 TRP D 382 1 11 HELIX 36 36 LEU D 394 ASP D 402 1 9 HELIX 37 37 PRO D 403 GLY D 406 5 4 HELIX 38 38 ASP D 409 MET D 416 1 8 HELIX 39 39 PRO D 424 GLY D 430 1 7 HELIX 40 40 LYS D 431 ARG D 435 5 5 HELIX 41 41 ASP D 439 ASN D 468 1 30 HELIX 42 42 GLN D 470 GLU D 476 1 7 HELIX 43 43 LEU D 477 GLY D 492 1 16 HELIX 44 44 ASP D 496 GLY D 523 1 28 HELIX 45 45 SER D 530 GLU D 540 1 11 HELIX 46 46 SER D 557 LEU D 564 1 8 HELIX 47 47 GLU D 569 THR D 586 1 18 HELIX 48 48 ILE D 588 VAL D 595 1 8 HELIX 49 49 LEU D 630 LYS D 635 1 6 HELIX 50 50 ILE D 636 GLN D 638 5 3 HELIX 51 51 GLN D 656 GLU D 667 1 12 HELIX 52 52 ASP D 668 ARG D 677 1 10 HELIX 53 53 ASP D 680 GLN D 691 1 12 HELIX 54 54 SER D 693 VAL D 697 5 5 HELIX 55 55 THR D 698 TYR D 710 1 13 HELIX 56 56 SER D 717 ASN D 726 1 10 HELIX 57 57 SER D 728 PHE D 743 1 16 HELIX 58 58 PHE D 743 GLY D 761 1 19 HELIX 59 59 PRO D 774 SER D 778 5 5 HELIX 60 60 ASN D 780 GLU D 818 1 39 HELIX 61 61 GLU D 840 GLN D 854 1 15 SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 G 6 THR D 302 LEU D 303 0 SHEET 2 G 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 G 6 GLY D 334 ASN D 339 -1 N VAL D 337 O PHE D 344 SHEET 4 G 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 G 6 LYS D 367 MET D 370 1 O SER D 369 N LEU D 318 SHEET 6 G 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 H 3 LYS D 601 VAL D 602 0 SHEET 2 H 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 H 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 I 2 LYS D 549 THR D 550 0 SHEET 2 I 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 J 2 ILE D 605 ASN D 607 0 SHEET 2 J 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 K 4 HIS D 823 GLN D 827 0 SHEET 2 K 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 K 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 K 4 VAL D 864 GLY D 869 -1 O ASP D 865 N ASP D 653 SHEET 1 L 2 TYR D 762 THR D 764 0 SHEET 2 L 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763 LINK C LEU A 387 N CME A 388 1555 1555 1.32 LINK C CME A 388 N GLY A 389 1555 1555 1.33 LINK C LEU D 387 N CME D 388 1555 1555 1.34 LINK C CME D 388 N GLY D 389 1555 1555 1.33 LINK O3' DG B 28 P DDG B 29 1555 1555 1.63 LINK O3' DG E 28 P DDG E 29 1555 1555 1.70 LINK C1 GLC G 1 O2 FRU G 2 1555 1555 1.42 LINK C1 GLC H 1 O2 FRU H 2 1555 1555 1.43 LINK MG MG A 200 O2A D3T A 201 1555 1555 2.12 LINK MG MG A 200 O2B D3T A 201 1555 1555 1.88 LINK MG MG A 200 O2G D3T A 201 1555 1555 2.04 LINK MG MG A 200 O HOH A 249 1555 1555 2.46 LINK MG MG A 200 O HOH A 930 1555 1555 2.09 LINK MG MG A 200 O HOH A1064 1555 1555 2.27 LINK O HOH D 147 MG MG D 200 1555 1555 2.02 LINK O HOH D 161 MG MG D 200 1555 1555 2.18 LINK MG MG D 200 O2A D3T D 202 1555 1555 2.03 LINK MG MG D 200 O1G D3T D 202 1555 1555 2.08 LINK MG MG D 200 O HOH D 945 1555 1555 2.07 CISPEP 1 GLU A 620 PRO A 621 0 1.48 CISPEP 2 GLU D 620 PRO D 621 0 -0.34 CRYST1 93.170 108.710 152.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006570 0.00000