PDB Short entry for 3HPD HEADER TRANSFERASE 04-JUN-09 3HPD TITLE STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE PROTEIN FROM PYROCOCCUS TITLE 2 HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYETHYLTHIAZOLE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4-METHYL-5-BETA-HYDROXYETHYLTHIAZOLE KINASE, THZ KINASE, TH COMPND 5 KINASE; COMPND 6 EC: 2.7.1.50; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODON PLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS ALPHA-BETA, ATP BINDING, KINASE, TRANSFERASE, ATP-BINDING, MAGNESIUM, KEYWDS 2 METAL-BINDING, NUCLEOTIDE-BINDING, THIAMINE BIOSYNTHESIS, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR J.JEYAKANTHAN,S.THAMOTHARAN,S.KURAMITSU,S.YOKOYAMA,T.H.TAHIROV,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 01-NOV-23 3HPD 1 REMARK REVDAT 2 13-JUL-11 3HPD 1 VERSN REVDAT 1 16-JUN-09 3HPD 0 SPRSDE 16-JUN-09 3HPD 1V8A JRNL AUTH J.JEYAKANTHAN,S.KURAMITSU,S.YOKOYAMA JRNL TITL STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE PROTEIN FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 853468.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 19747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2943 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.660 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.430 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 57.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PO4.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PO4.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (1 1 1), GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 19.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : 0.29200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1C3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.88M SODIUMCITRATE, 0.1M CHESS, PH REMARK 280 9.3, MICROBATCH METHOD, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 56.12100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 56.12100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 56.12100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 56.12100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 56.12100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 56.12100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 112.24200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 112.24200 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 112.24200 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 112.24200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 395 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 133 REMARK 465 THR A 134 REMARK 465 ARG A 135 REMARK 465 GLY A 136 REMARK 465 VAL A 137 REMARK 465 ASP A 138 REMARK 465 SER A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 TYR A 142 REMARK 465 LEU A 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 21 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 -169.47 -124.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001157.1 RELATED DB: TARGETDB DBREF 3HPD A 1 265 UNP O58877 THIM_PYRHO 1 265 SEQRES 1 A 265 MET LYS PHE ILE ILE GLU ALA LEU LYS ARG VAL ARG GLU SEQRES 2 A 265 ARG ARG PRO LEU VAL HIS ASN ILE THR ASN PHE VAL VAL SEQRES 3 A 265 MET ASN THR THR ALA ASN ALA LEU LEU ALA LEU GLY ALA SEQRES 4 A 265 SER PRO VAL MET ALA HIS ALA GLU GLU GLU LEU GLU GLU SEQRES 5 A 265 MET ILE ARG LEU ALA ASP ALA VAL VAL ILE ASN ILE GLY SEQRES 6 A 265 THR LEU ASP SER GLY TRP ARG ARG SER MET VAL LYS ALA SEQRES 7 A 265 THR GLU ILE ALA ASN GLU LEU GLY LYS PRO ILE VAL LEU SEQRES 8 A 265 ASP PRO VAL GLY ALA GLY ALA THR LYS PHE ARG THR ARG SEQRES 9 A 265 VAL SER LEU GLU ILE LEU SER ARG GLY VAL ASP VAL LEU SEQRES 10 A 265 LYS GLY ASN PHE GLY GLU ILE SER ALA LEU LEU GLY GLU SEQRES 11 A 265 GLU GLY LYS THR ARG GLY VAL ASP SER LEU GLU TYR GLY SEQRES 12 A 265 GLU GLU GLU ALA LYS LYS LEU THR MET ASN ALA ALA ARG SEQRES 13 A 265 GLU PHE ASN THR THR VAL ALA VAL THR GLY ALA VAL ASP SEQRES 14 A 265 TYR VAL SER ASP GLY ARG ARG THR PHE ALA VAL TYR ASN SEQRES 15 A 265 GLY HIS GLU LEU LEU GLY ARG VAL THR GLY THR GLY CYS SEQRES 16 A 265 MET VAL ALA ALA LEU THR GLY ALA PHE VAL ALA VAL THR SEQRES 17 A 265 GLU PRO LEU LYS ALA THR THR SER ALA LEU VAL THR PHE SEQRES 18 A 265 GLY ILE ALA ALA GLU LYS ALA TYR GLU GLU ALA LYS TYR SEQRES 19 A 265 PRO GLY SER PHE HIS VAL LYS LEU TYR ASP TRP LEU TYR SEQRES 20 A 265 ARG ILE ASN GLU ASN VAL ILE ARG THR TYR ALA LYS VAL SEQRES 21 A 265 ARG GLU VAL GLU LEU HET PO4 A 300 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *208(H2 O) HELIX 1 1 MET A 1 ARG A 15 1 15 HELIX 2 2 VAL A 26 GLY A 38 1 13 HELIX 3 3 GLU A 49 ALA A 57 1 9 HELIX 4 4 ASP A 68 GLY A 86 1 19 HELIX 5 5 THR A 99 GLY A 113 1 15 HELIX 6 6 PHE A 121 GLY A 132 1 12 HELIX 7 7 GLY A 143 PHE A 158 1 16 HELIX 8 8 HIS A 184 VAL A 190 5 7 HELIX 9 9 GLY A 192 ALA A 206 1 15 HELIX 10 10 GLU A 209 ALA A 232 1 24 HELIX 11 11 TYR A 234 ILE A 249 1 16 HELIX 12 12 ASN A 250 ALA A 258 1 9 SHEET 1 A 9 SER A 40 MET A 43 0 SHEET 2 A 9 LEU A 17 ILE A 21 1 N VAL A 18 O SER A 40 SHEET 3 A 9 ALA A 59 ASN A 63 1 O VAL A 61 N HIS A 19 SHEET 4 A 9 ILE A 89 ASP A 92 1 O VAL A 90 N ILE A 62 SHEET 5 A 9 VAL A 116 ASN A 120 1 O VAL A 116 N LEU A 91 SHEET 6 A 9 THR A 161 THR A 165 1 O THR A 161 N LEU A 117 SHEET 7 A 9 ASP A 169 SER A 172 -1 O SER A 172 N VAL A 162 SHEET 8 A 9 THR A 177 VAL A 180 -1 O VAL A 180 N ASP A 169 SHEET 9 A 9 VAL A 260 VAL A 263 -1 O VAL A 263 N THR A 177 SITE 1 AC1 7 GLY A 194 HOH A 361 HOH A 368 HOH A 454 SITE 2 AC1 7 HOH A 460 HOH A 461 HOH A 473 CRYST1 112.242 112.242 112.242 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008909 0.00000