PDB Short entry for 3HQR
HEADER    OXIDOREDUCTASE/TRANSCRIPTION            08-JUN-09   3HQR              
TITLE     PHD2:MN:NOG:HIF1-ALPHA SUBSTRATE COMPLEX                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: EGL NINE HOMOLOG 1;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PHD2 CATALYTIC DOMAIN, RESIDUES 181-426;                   
COMPND   5 SYNONYM: PROLYL HYDROXYLASE, HYPOXIA-INDUCIBLE FACTOR PROLYL         
COMPND   6 HYDROXYLASE 2, HIF-PROLYL HYDROXYLASE 2, HIF-PH2, HPH-2, PROLYL      
COMPND   7 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2, PHD2, SM-20;                
COMPND   8 EC: 1.14.11.-;                                                       
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MUTATION: YES;                                                       
COMPND  11 MOL_ID: 2;                                                           
COMPND  12 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA;                          
COMPND  13 CHAIN: S;                                                            
COMPND  14 FRAGMENT: C-TERMINAL DEGRADATION DOMAIN, RESIDUES 558-574;           
COMPND  15 SYNONYM: HIF-1 ALPHA, HIF1 ALPHA, ARNT-INTERACTING PROTEIN, MEMBER OF
COMPND  16 PAS PROTEIN 1, BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP1;              
COMPND  17 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PHD2;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET28A(+);                                
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  14 ORGANISM_COMMON: HUMAN;                                              
SOURCE  15 ORGANISM_TAXID: 9606;                                                
SOURCE  16 OTHER_DETAILS: PEPTIDE SYNTHESIS                                     
KEYWDS    DOUBLE STRANDED BETA-HELIX, ALTERNATIVE SPLICING, CONGENITAL          
KEYWDS   2 ERYTHROCYTOSIS, DIOXYGENASE, DISEASE MUTATION, IRON, METAL-BINDING,  
KEYWDS   3 OXIDOREDUCTASE, VITAMIN C, ZINC, ZINC-FINGER, ACTIVATOR, CYTOPLASM,  
KEYWDS   4 DNA-BINDING, HYDROXYLATION, ISOPEPTIDE BOND, NUCLEUS,                
KEYWDS   5 PHOSPHOPROTEIN, POLYMORPHISM, S-NITROSYLATION, TRANSCRIPTION,        
KEYWDS   6 TRANSCRIPTION REGULATION, UBL CONJUGATION, OXIDOREDUCTASE-           
KEYWDS   7 TRANSCRIPTION COMPLEX                                                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    R.CHOWDHURY,M.A.MCDONOUGH,C.J.SCHOFIELD                               
REVDAT   4   01-NOV-23 3HQR    1       REMARK                                   
REVDAT   3   10-NOV-21 3HQR    1       REMARK SEQADV                            
REVDAT   2   01-NOV-17 3HQR    1       REMARK                                   
REVDAT   1   28-JUL-09 3HQR    0                                                
JRNL        AUTH   R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN,  
JRNL        AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD                          
JRNL        TITL   STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO  
JRNL        TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES                       
JRNL        REF    STRUCTURE                     V.  17   981 2009              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   19604478                                                     
JRNL        DOI    10.1016/J.STR.2009.06.002                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   M.A.MCDONOUGH,V.LI,E.FLASHMAN,R.CHOWDHURY,C.MOHR,            
REMARK   1  AUTH 2 B.M.R.LIENARD,J.ZONDLO,N.J.OLDHAM,I.J.CLIFTON,J.LEWIS,       
REMARK   1  AUTH 3 L.A.MCNEILL,R.J.M.KURZEJA,K.S.HEWITSON,E.YANG,S.JORDAN,      
REMARK   1  AUTH 4 R.S.SYED,C.J.SCHOFIELD                                       
REMARK   1  TITL   CELLULAR OXYGEN SENSING: CRYSTAL STRUCTURE OF                
REMARK   1  TITL 2 HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE (PHD2)           
REMARK   1  REF    PROC.NATL.ACAD.SCI.USA        V. 103  9814 2006              
REMARK   1  REFN                   ISSN 0027-8424                               
REMARK   1  PMID   16782814                                                     
REMARK   1  DOI    10.1073/PNAS.0601283103                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.18                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 172620.000                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 97.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 13494                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.234                           
REMARK   3   FREE R VALUE                     : 0.248                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.500                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 613                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.010                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.00                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.15                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 95.10                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2114                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3080                       
REMARK   3   BIN FREE R VALUE                    : 0.3380                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 1.40                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 29                           
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.063                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1899                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 11                                      
REMARK   3   SOLVENT ATOMS            : 151                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 25.30                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 25.25                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -5.05000                                             
REMARK   3    B22 (A**2) : 1.46000                                              
REMARK   3    B33 (A**2) : 3.59000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.26                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.27                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.31                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.29                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.008                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.600                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 24.60                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.940                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.37                                                 
REMARK   3   BSOL        : 44.20                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_REP.PARAM                              
REMARK   3  PARAMETER FILE  3  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : OGA.PARAM                                      
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : OGA.TOP                                        
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3HQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000053467.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-JUN-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID23-2                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.87260                            
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : PT COATED MIRRORS IN A             
REMARK 200                                   KIRKPATRICK-BAEZ (KB) GEOMETRY     
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 15231                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.2                               
REMARK 200  DATA REDUNDANCY                : 4.500                              
REMARK 200  R MERGE                    (I) : 0.15700                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 7.8790                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.07                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.41900                            
REMARK 200  R SYM FOR SHELL            (I) : 0.42000                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.920                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER 1.3.2                                          
REMARK 200 STARTING MODEL: PDB ENTRY 2G19                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 25.91                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.66                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM MGCL2, PH 7.5,       
REMARK 280  HANGING DROP, TEMPERATURE 298K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       19.68950            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       36.11050            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       34.39900            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       36.11050            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       19.68950            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       34.39900            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 10810 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     PRO A   181                                                      
REMARK 465     ASN A   182                                                      
REMARK 465     GLY A   183                                                      
REMARK 465     GLY A   409                                                      
REMARK 465     VAL A   410                                                      
REMARK 465     ARG A   411                                                      
REMARK 465     VAL A   412                                                      
REMARK 465     GLU A   413                                                      
REMARK 465     LEU A   414                                                      
REMARK 465     ASN A   415                                                      
REMARK 465     LYS A   416                                                      
REMARK 465     PRO A   417                                                      
REMARK 465     SER A   418                                                      
REMARK 465     ASP A   419                                                      
REMARK 465     SER A   420                                                      
REMARK 465     VAL A   421                                                      
REMARK 465     GLY A   422                                                      
REMARK 465     LYS A   423                                                      
REMARK 465     ASP A   424                                                      
REMARK 465     VAL A   425                                                      
REMARK 465     PHE A   426                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 196    CD   OE1  OE2                                       
REMARK 470     LYS A 216    CG   CD   CE   NZ                                   
REMARK 470     GLU A 267    CD   OE1  OE2                                       
REMARK 470     ASN A 284    CG   OD1  ND2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    GLY A 406   N   -  CA  -  C   ANGL. DEV. = -18.9 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 197      -71.10   -136.42                                   
REMARK 500    PHE A 235      152.07    -44.22                                   
REMARK 500    SER A 245      150.31     65.60                                   
REMARK 500    ASP A 246      -69.69    -22.50                                   
REMARK 500    ASN A 284     -132.44     44.09                                   
REMARK 500    PRO A 304      -21.72    -36.90                                   
REMARK 500    ASP A 333       46.99     38.72                                   
REMARK 500    PRO A 358       47.73    -77.77                                   
REMARK 500    ASP A 369     -167.11    -71.00                                   
REMARK 500    PRO A 378      124.05    -38.67                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    TYR A 403         0.07    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 501  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 315   OD1                                                    
REMARK 620 2 OGA A 600   O2  110.1                                              
REMARK 620 3 OGA A 600   O2' 168.9  74.8                                        
REMARK 620 4 HOH A1011   O    90.3  97.0  79.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 600                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3HQU   RELATED DB: PDB                                   
REMARK 900 PHD2:FE:FG2:PARTIAL HIF1-ALPHA SUBSTRATE COMPLEX                     
REMARK 900 RELATED ID: 2G1M   RELATED DB: PDB                                   
REMARK 900 PHD2:INHIBITOR COMPLEX                                               
DBREF  3HQR A  181   426  UNP    Q9GZT9   EGLN1_HUMAN    181    426             
DBREF  3HQR S  558   574  UNP    Q16665   HIF1A_HUMAN    558    574             
SEQADV 3HQR ALA A  398  UNP  Q9GZT9    ARG   398 ENGINEERED MUTATION            
SEQRES   1 A  246  PRO ASN GLY GLN THR LYS PRO LEU PRO ALA LEU LYS LEU          
SEQRES   2 A  246  ALA LEU GLU TYR ILE VAL PRO CYS MET ASN LYS HIS GLY          
SEQRES   3 A  246  ILE CYS VAL VAL ASP ASP PHE LEU GLY LYS GLU THR GLY          
SEQRES   4 A  246  GLN GLN ILE GLY ASP GLU VAL ARG ALA LEU HIS ASP THR          
SEQRES   5 A  246  GLY LYS PHE THR ASP GLY GLN LEU VAL SER GLN LYS SER          
SEQRES   6 A  246  ASP SER SER LYS ASP ILE ARG GLY ASP LYS ILE THR TRP          
SEQRES   7 A  246  ILE GLU GLY LYS GLU PRO GLY CYS GLU THR ILE GLY LEU          
SEQRES   8 A  246  LEU MET SER SER MET ASP ASP LEU ILE ARG HIS CYS ASN          
SEQRES   9 A  246  GLY LYS LEU GLY SER TYR LYS ILE ASN GLY ARG THR LYS          
SEQRES  10 A  246  ALA MET VAL ALA CYS TYR PRO GLY ASN GLY THR GLY TYR          
SEQRES  11 A  246  VAL ARG HIS VAL ASP ASN PRO ASN GLY ASP GLY ARG CYS          
SEQRES  12 A  246  VAL THR CYS ILE TYR TYR LEU ASN LYS ASP TRP ASP ALA          
SEQRES  13 A  246  LYS VAL SER GLY GLY ILE LEU ARG ILE PHE PRO GLU GLY          
SEQRES  14 A  246  LYS ALA GLN PHE ALA ASP ILE GLU PRO LYS PHE ASP ARG          
SEQRES  15 A  246  LEU LEU PHE PHE TRP SER ASP ARG ARG ASN PRO HIS GLU          
SEQRES  16 A  246  VAL GLN PRO ALA TYR ALA THR ARG TYR ALA ILE THR VAL          
SEQRES  17 A  246  TRP TYR PHE ASP ALA ASP GLU ARG ALA ALA ALA LYS VAL          
SEQRES  18 A  246  LYS TYR LEU THR GLY GLU LYS GLY VAL ARG VAL GLU LEU          
SEQRES  19 A  246  ASN LYS PRO SER ASP SER VAL GLY LYS ASP VAL PHE              
SEQRES   1 S   17  ASP LEU GLU MET LEU ALA PRO TYR ILE PRO MET ASP ASP          
SEQRES   2 S   17  ASP PHE GLN LEU                                              
HET     MN  A 501       1                                                       
HET    OGA  A 600      10                                                       
HETNAM      MN MANGANESE (II) ION                                               
HETNAM     OGA N-OXALYLGLYCINE                                                  
FORMUL   3   MN    MN 2+                                                        
FORMUL   4  OGA    C4 H5 N O5                                                   
FORMUL   5  HOH   *151(H2 O)                                                    
HELIX    1   1 PRO A  189  TYR A  197  1                                   9    
HELIX    2   2 TYR A  197  GLY A  206  1                                  10    
HELIX    3   3 LEU A  214  THR A  232  1                                  19    
HELIX    4   4 SER A  247  ILE A  251  5                                   5    
HELIX    5   5 CYS A  266  CYS A  283  1                                  18    
HELIX    6   6 ASP A  335  GLY A  340  1                                   6    
HELIX    7   7 ALA A  393  THR A  405  1                                  13    
HELIX    8   8 ASP S  558  LEU S  562  5                                   5    
SHEET    1   A 7 ILE A 207  VAL A 210  0                                        
SHEET    2   A 7 LEU A 363  TRP A 367 -1  O  PHE A 365   N  CYS A 208           
SHEET    3   A 7 ARG A 322  TYR A 329 -1  N  ILE A 327   O  LEU A 364           
SHEET    4   A 7 ARG A 383  ASP A 392 -1  O  TYR A 390   N  VAL A 324           
SHEET    5   A 7 ALA A 298  TYR A 303 -1  N  MET A 299   O  THR A 387           
SHEET    6   A 7 LYS A 255  ILE A 259 -1  N  THR A 257   O  VAL A 300           
SHEET    7   A 7 THR A 236  ASP A 237 -1  N  THR A 236   O  ILE A 256           
SHEET    1   B 6 ILE A 207  VAL A 210  0                                        
SHEET    2   B 6 LEU A 363  TRP A 367 -1  O  PHE A 365   N  CYS A 208           
SHEET    3   B 6 ARG A 322  TYR A 329 -1  N  ILE A 327   O  LEU A 364           
SHEET    4   B 6 ARG A 383  ASP A 392 -1  O  TYR A 390   N  VAL A 324           
SHEET    5   B 6 ILE A 292  ARG A 295 -1  N  GLY A 294   O  PHE A 391           
SHEET    6   B 6 PHE S 572  GLN S 573 -1  O  PHE S 572   N  ARG A 295           
SHEET    1   C 4 THR A 308  HIS A 313  0                                        
SHEET    2   C 4 HIS A 374  ALA A 379 -1  O  ALA A 379   N  THR A 308           
SHEET    3   C 4 LEU A 343  ILE A 345 -1  N  ARG A 344   O  GLU A 375           
SHEET    4   C 4 ALA A 354  ILE A 356 -1  O  ILE A 356   N  LEU A 343           
SSBOND   1 CYS A  201    CYS A  208                          1555   1555  2.03  
LINK         OD1 ASP A 315                MN    MN A 501     1555   1555  1.96  
LINK        MN    MN A 501                 O2  OGA A 600     1555   1555  2.43  
LINK        MN    MN A 501                 O2' OGA A 600     1555   1555  2.01  
LINK        MN    MN A 501                 O   HOH A1011     1555   1555  2.20  
CISPEP   1 LYS A  186    PRO A  187          0        -1.27                     
SITE     1 AC1  5 HIS A 313  ASP A 315  HIS A 374  OGA A 600                    
SITE     2 AC1  5 HOH A1011                                                     
SITE     1 AC2 16 MET A 299  TYR A 310  HIS A 313  ASP A 315                    
SITE     2 AC2 16 ILE A 327  TYR A 329  LEU A 343  HIS A 374                    
SITE     3 AC2 16 VAL A 376  ARG A 383   MN A 501  HOH A1005                    
SITE     4 AC2 16 HOH A1006  HOH A1011  HOH A1056  PRO S 564                    
CRYST1   39.379   68.798   72.221  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.025394  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.014535  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.013846        0.00000