PDB Short entry for 3HW2 HEADER SIGNALING PROTEIN 17-JUN-09 3HW2 TITLE CRYSTAL STRUCTURE OF THE SIFA-SKIP(PH) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIFA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: PLESKRIN HOMOLOGY (PH) DOMAIN, UNP RESIDUES 771-876; COMPND 9 SYNONYM: SIFA AND KINESIN-INTERACTING PROTEIN, SALMONELLA-INDUCED COMPND 10 FILAMENTS A AND KINESIN-INTERACTING PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS SIFA, PROTEIN COMPLEX, SALMONELLA INFECTION, LATE EFFECTOR, KEYWDS 2 VIRULENCE, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.DIACOVICH,A.DUMONT,D.LAFITTE,E.SOPRANO,A.-A.GUILHON,C.BIGNON,J.- AUTHOR 2 P.GORVEL,Y.BOURNE,S.MERESSE REVDAT 5 01-NOV-23 3HW2 1 REMARK REVDAT 4 26-FEB-14 3HW2 1 REMARK REVDAT 3 13-JUL-11 3HW2 1 VERSN REVDAT 2 01-DEC-09 3HW2 1 JRNL REVDAT 1 03-NOV-09 3HW2 0 JRNL AUTH L.DIACOVICH,A.DUMONT,D.LAFITTE,E.SOPRANO,A.-A.GUILHON, JRNL AUTH 2 C.BIGNON,J.-P.GORVEL,Y.BOURNE,S.MERESSE JRNL TITL INTERACTION BETWEEN THE SIFA VIRULENCE FACTOR AND ITS HOST JRNL TITL 2 TARGET SKIP IS ESSENTIAL FOR SALMONELLA PATHOGENESIS JRNL REF J.BIOL.CHEM. V. 284 33151 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801640 JRNL DOI 10.1074/JBC.M109.034975 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 6424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.27000 REMARK 3 B22 (A**2) : -4.83000 REMARK 3 B33 (A**2) : 11.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.760 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.694 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 96.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4561 ; 1.338 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 7.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;36.081 ;24.494 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 613 ;18.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2526 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0542 30.7886 -8.0223 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.1295 REMARK 3 T33: 0.2054 T12: 0.0349 REMARK 3 T13: 0.0582 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 6.8029 L22: 7.7673 REMARK 3 L33: 5.0612 L12: -0.9298 REMARK 3 L13: 0.6282 L23: 2.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.2116 S12: 0.2383 S13: 1.1054 REMARK 3 S21: -0.2525 S22: -0.0294 S23: -0.1389 REMARK 3 S31: -0.2146 S32: 0.3911 S33: -0.1822 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9355 13.6960 -17.2564 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.3010 REMARK 3 T33: 0.5627 T12: 0.0374 REMARK 3 T13: -0.3842 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 6.8127 L22: 2.3589 REMARK 3 L33: 3.3025 L12: 1.3540 REMARK 3 L13: -2.9264 L23: -1.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.9923 S13: -0.1682 REMARK 3 S21: -0.7668 S22: 0.2402 S23: 1.0414 REMARK 3 S31: 0.3284 S32: 0.0003 S33: -0.2364 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 772 B 876 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8914 13.7961 2.2819 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1268 REMARK 3 T33: 0.1518 T12: -0.0226 REMARK 3 T13: -0.1005 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 10.4060 L22: 9.0748 REMARK 3 L33: 5.3317 L12: -1.3226 REMARK 3 L13: 0.7403 L23: 1.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: -0.5933 S13: -0.0865 REMARK 3 S21: 0.6981 S22: -0.0185 S23: -1.1378 REMARK 3 S31: 0.1205 S32: -0.5837 S33: -0.0800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7176 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3CXB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M NA ACETATE REMARK 280 TRIHYDRATE, 0.1 M TRIS-HCL, PH 8.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.89950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.43300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.89950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.43300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 GLU A 13 REMARK 465 ILE A 14 REMARK 465 LEU A 15 REMARK 465 THR A 16 REMARK 465 ASN A 17 REMARK 465 SER A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 SER A 329 REMARK 465 GLY A 330 REMARK 465 CYS A 331 REMARK 465 LEU A 332 REMARK 465 CYS A 333 REMARK 465 CYS A 334 REMARK 465 PHE A 335 REMARK 465 LEU A 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 TYR B 787 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 787 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 850 C - N - CA ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 29.04 -77.14 REMARK 500 LYS A 35 -17.30 -40.61 REMARK 500 SER A 40 -102.54 40.20 REMARK 500 GLU A 57 -39.22 -31.94 REMARK 500 HIS A 90 17.16 58.18 REMARK 500 GLU A 91 11.63 58.01 REMARK 500 ALA A 94 -20.20 -36.57 REMARK 500 GLU A 105 32.77 37.94 REMARK 500 ASN A 107 151.32 69.36 REMARK 500 ASN A 115 -147.92 -93.18 REMARK 500 SER A 140 -6.65 -54.44 REMARK 500 ILE A 173 104.01 -42.81 REMARK 500 ASP A 179 -16.85 -47.94 REMARK 500 LYS A 191 -147.49 -113.93 REMARK 500 LEU A 194 -78.94 47.25 REMARK 500 ASP A 195 -31.29 -27.72 REMARK 500 LEU A 221 52.38 -97.40 REMARK 500 ASN A 225 47.95 -91.67 REMARK 500 GLN A 246 57.70 -109.81 REMARK 500 GLU A 248 -138.30 58.62 REMARK 500 ILE A 249 118.38 -30.13 REMARK 500 PRO A 251 99.11 -50.43 REMARK 500 THR A 254 11.75 -65.22 REMARK 500 VAL A 265 29.62 -73.65 REMARK 500 ALA A 268 57.44 -92.88 REMARK 500 VAL A 277 46.86 -92.02 REMARK 500 SER A 283 -98.56 -87.43 REMARK 500 PRO A 307 -39.00 -39.52 REMARK 500 GLN A 327 -61.05 -98.66 REMARK 500 THR B 774 -67.91 -121.06 REMARK 500 THR B 785 -159.27 -142.16 REMARK 500 TYR B 787 -103.31 -98.52 REMARK 500 LYS B 790 -116.11 70.40 REMARK 500 GLU B 791 -175.68 174.51 REMARK 500 ASN B 802 -115.87 60.46 REMARK 500 THR B 812 -6.98 -140.02 REMARK 500 LEU B 818 146.48 -175.02 REMARK 500 ASN B 834 77.90 -63.21 REMARK 500 THR B 835 107.48 -33.43 REMARK 500 THR B 836 -90.30 -106.41 REMARK 500 ARG B 849 37.24 72.63 REMARK 500 LYS B 875 -61.16 -121.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 848 ARG B 849 144.31 REMARK 500 ARG B 849 PRO B 850 136.60 REMARK 500 PRO B 850 CYS B 851 134.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CXB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIFA AND SKIP DBREF 3HW2 A 1 336 UNP Q56061 SIFA_SALTY 1 336 DBREF 3HW2 B 772 876 UNP Q8IWE5 PKHM2_HUMAN 771 875 SEQRES 1 A 336 MET PRO ILE THR ILE GLY ASN GLY PHE LEU LYS SER GLU SEQRES 2 A 336 ILE LEU THR ASN SER PRO ARG ASN THR LYS GLU ALA TRP SEQRES 3 A 336 TRP LYS VAL LEU TRP GLU LYS ILE LYS ASP PHE PHE PHE SEQRES 4 A 336 SER THR GLY LYS ALA LYS ALA ASP ARG CYS LEU HIS GLU SEQRES 5 A 336 MET LEU PHE ALA GLU ARG ALA PRO THR ARG GLU ARG LEU SEQRES 6 A 336 THR GLU ILE PHE PHE GLU LEU LYS GLU LEU ALA CYS ALA SEQRES 7 A 336 SER GLN ARG ASP ARG PHE GLN VAL HIS ASN PRO HIS GLU SEQRES 8 A 336 ASN ASP ALA THR ILE ILE LEU ARG ILE MET ASP GLN ASN SEQRES 9 A 336 GLU GLU ASN GLU LEU LEU ARG ILE THR GLN ASN THR ASP SEQRES 10 A 336 THR PHE SER CYS GLU VAL MET GLY ASN LEU TYR PHE LEU SEQRES 11 A 336 MET LYS ASP ARG PRO ASP ILE LEU LYS SER HIS PRO GLN SEQRES 12 A 336 MET THR ALA MET ILE LYS ARG ARG TYR SER GLU ILE VAL SEQRES 13 A 336 ASP TYR PRO LEU PRO SER THR LEU CYS LEU ASN PRO ALA SEQRES 14 A 336 GLY ALA PRO ILE LEU SER VAL PRO LEU ASP ASN ILE GLU SEQRES 15 A 336 GLY TYR LEU TYR THR GLU LEU ARG LYS GLY HIS LEU ASP SEQRES 16 A 336 GLY TRP LYS ALA GLN GLU LYS ALA THR TYR LEU ALA ALA SEQRES 17 A 336 LYS ILE GLN SER GLY ILE GLU LYS THR THR ARG ILE LEU SEQRES 18 A 336 HIS HIS ALA ASN ILE SER GLU SER THR GLN GLN ASN ALA SEQRES 19 A 336 PHE LEU GLU THR MET ALA MET CYS GLY LEU LYS GLN LEU SEQRES 20 A 336 GLU ILE PRO PRO PRO HIS THR HIS ILE PRO ILE GLU LYS SEQRES 21 A 336 MET VAL LYS GLU VAL LEU LEU ALA ASP LYS THR PHE GLN SEQRES 22 A 336 ALA PHE LEU VAL THR ASP PRO SER THR SER GLN SER MET SEQRES 23 A 336 LEU ALA GLU ILE VAL GLU ALA ILE SER ASP GLN VAL PHE SEQRES 24 A 336 HIS ALA ILE PHE ARG ILE ASP PRO GLN ALA ILE GLN LYS SEQRES 25 A 336 MET ALA GLU GLU GLN LEU THR THR LEU HIS VAL ARG SER SEQRES 26 A 336 GLU GLN GLN SER GLY CYS LEU CYS CYS PHE LEU SEQRES 1 B 105 THR ILE THR LYS GLU GLY MET LEU HIS TYR LYS ALA GLY SEQRES 2 B 105 THR SER TYR LEU GLY LYS GLU HIS TRP LYS THR CYS PHE SEQRES 3 B 105 VAL VAL LEU SER ASN GLY ILE LEU TYR GLN TYR PRO ASP SEQRES 4 B 105 ARG THR ASP VAL ILE PRO LEU LEU SER VAL ASN MET GLY SEQRES 5 B 105 GLY GLU GLN CYS GLY GLY CYS ARG ARG ALA ASN THR THR SEQRES 6 B 105 ASP ARG PRO HIS ALA PHE GLN VAL ILE LEU SER ASP ARG SEQRES 7 B 105 PRO CYS LEU GLU LEU SER ALA GLU SER GLU ALA GLU MET SEQRES 8 B 105 ALA GLU TRP MET GLN HIS LEU CYS GLN ALA VAL SER LYS SEQRES 9 B 105 GLY HELIX 1 1 GLU A 24 LYS A 33 1 10 HELIX 2 2 PHE A 39 PHE A 55 1 17 HELIX 3 3 THR A 61 ALA A 76 1 16 HELIX 4 4 CYS A 77 ASP A 82 5 6 HELIX 5 5 ASN A 88 ASN A 92 5 5 HELIX 6 6 LEU A 178 ARG A 190 1 13 HELIX 7 7 LEU A 194 LEU A 221 1 28 HELIX 8 8 SER A 227 GLY A 243 1 17 HELIX 9 9 PRO A 257 ALA A 268 1 12 HELIX 10 10 PHE A 272 VAL A 277 1 6 HELIX 11 11 SER A 283 ARG A 304 1 22 HELIX 12 12 ASP A 306 VAL A 323 1 18 HELIX 13 13 ARG A 324 GLN A 327 5 4 HELIX 14 14 SER B 858 SER B 874 1 17 SHEET 1 A 8 PHE A 84 HIS A 87 0 SHEET 2 A 8 ILE A 96 MET A 101 -1 O ILE A 97 N HIS A 87 SHEET 3 A 8 GLU A 108 GLN A 114 -1 O ILE A 112 N LEU A 98 SHEET 4 A 8 THR A 118 VAL A 123 -1 O GLU A 122 N ARG A 111 SHEET 5 A 8 ASN A 126 LYS A 132 -1 O MET A 131 N PHE A 119 SHEET 6 A 8 CYS B 827 ARG B 832 -1 O ARG B 832 N TYR A 128 SHEET 7 A 8 HIS B 840 LEU B 846 -1 O ILE B 845 N GLY B 829 SHEET 8 A 8 CYS B 851 ALA B 856 -1 O LEU B 854 N PHE B 842 SHEET 1 B 3 THR A 145 SER A 153 0 SHEET 2 B 3 TYR A 158 ASN A 167 -1 O THR A 163 N LYS A 149 SHEET 3 B 3 LEU A 174 PRO A 177 -1 O LEU A 174 N LEU A 166 SHEET 1 C 4 ILE B 773 TYR B 781 0 SHEET 2 C 4 LYS B 794 SER B 801 -1 O LEU B 800 N LYS B 775 SHEET 3 C 4 ILE B 804 TYR B 808 -1 O TYR B 808 N PHE B 797 SHEET 4 C 4 LEU B 818 ASN B 821 -1 O VAL B 820 N LEU B 805 CISPEP 1 LEU A 247 GLU A 248 0 -4.18 CISPEP 2 ILE A 249 PRO A 250 0 -9.38 CISPEP 3 SER A 281 THR A 282 0 7.58 CISPEP 4 GLY B 784 THR B 785 0 2.94 CRYST1 91.799 110.866 44.274 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022587 0.00000