PDB Short entry for 3I62 HEADER HYDROLASE/RNA 06-JUL-09 3I62 TITLE STRUCTURE OF MSS116P BOUND TO SSRNA AND ADP-ALUMINUM FLUORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37 TO 597; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MSS116, YD9346.05C, YDR194C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: RNA FRAGMENT COMMERCIALLY AVAILABLE KEYWDS PROTEIN-RNA COMPLEX, RNA HELICASE, DEAD-BOX, ATP-BINDING, HELICASE, KEYWDS 2 HYDROLASE, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, KEYWDS 3 NUCLEOTIDE-BINDING, RNA-BINDING, TRANSIT PEPTIDE, TRANSLATION KEYWDS 4 REGULATION, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DEL CAMPO,A.M.LAMBOWITZ REVDAT 4 06-SEP-23 3I62 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3I62 1 VERSN REVDAT 2 29-SEP-09 3I62 1 JRNL REVDAT 1 08-SEP-09 3I62 0 JRNL AUTH M.DEL CAMPO,A.M.LAMBOWITZ JRNL TITL STRUCTURE OF THE YEAST DEAD BOX PROTEIN MSS116P REVEALS TWO JRNL TITL 2 WEDGES THAT CRIMP RNA JRNL REF MOL.CELL V. 35 598 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19748356 JRNL DOI 10.1016/J.MOLCEL.2009.07.032 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 42491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3994 REMARK 3 NUCLEIC ACID ATOMS : 190 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4315 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2907 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5874 ; 1.031 ; 2.044 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7164 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 5.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;33.390 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 772 ;11.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4549 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 798 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 75.6250 43.7560 28.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.4577 REMARK 3 T33: 0.0826 T12: -0.1322 REMARK 3 T13: 0.0400 T23: -0.1753 REMARK 3 L TENSOR REMARK 3 L11: 8.1212 L22: 5.7934 REMARK 3 L33: 5.0913 L12: -1.3286 REMARK 3 L13: 3.2297 L23: -3.7697 REMARK 3 S TENSOR REMARK 3 S11: 0.2099 S12: -1.6300 S13: 0.5327 REMARK 3 S21: 1.0248 S22: -0.1585 S23: 0.2287 REMARK 3 S31: -0.8432 S32: -0.0270 S33: -0.0515 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 80.4660 37.8050 10.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0148 REMARK 3 T33: 0.0830 T12: -0.0104 REMARK 3 T13: -0.0140 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0639 L22: 1.4779 REMARK 3 L33: 1.1429 L12: 0.5418 REMARK 3 L13: -0.3271 L23: -0.3123 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.1118 S13: 0.2523 REMARK 3 S21: 0.1636 S22: -0.0406 S23: -0.0400 REMARK 3 S31: -0.0938 S32: 0.1093 S33: 0.0393 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 564 REMARK 3 ORIGIN FOR THE GROUP (A): 65.4700 10.0390 12.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: 0.0247 REMARK 3 T33: 0.0942 T12: 0.0038 REMARK 3 T13: 0.0072 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.3188 L22: 1.6905 REMARK 3 L33: 0.7175 L12: 0.1706 REMARK 3 L13: -0.0460 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.1341 S13: -0.1999 REMARK 3 S21: 0.0870 S22: 0.0246 S23: 0.0885 REMARK 3 S31: 0.0581 S32: -0.0322 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 565 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): 81.4720 -10.6750 6.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1734 REMARK 3 T33: 0.3597 T12: 0.0955 REMARK 3 T13: 0.0730 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 8.9904 L22: 4.1677 REMARK 3 L33: 7.8896 L12: -5.1096 REMARK 3 L13: 6.5486 L23: -1.7412 REMARK 3 S TENSOR REMARK 3 S11: 0.4184 S12: 0.6859 S13: -0.2165 REMARK 3 S21: -0.2593 S22: -0.1220 S23: 0.0274 REMARK 3 S31: 0.3930 S32: 1.0280 S33: -0.2963 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): 81.9330 16.6460 -1.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.1766 REMARK 3 T33: 0.2725 T12: 0.0311 REMARK 3 T13: 0.0598 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 3.5077 L22: 9.4862 REMARK 3 L33: 1.4307 L12: 4.9338 REMARK 3 L13: -1.9862 L23: -3.6409 REMARK 3 S TENSOR REMARK 3 S11: -0.4805 S12: 0.4418 S13: -0.4513 REMARK 3 S21: -1.0026 S22: 0.2580 S23: -0.7722 REMARK 3 S31: 0.4028 S32: -0.1031 S33: 0.2225 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 900 A 900 REMARK 3 RESIDUE RANGE : A 1000 A 1000 REMARK 3 ORIGIN FOR THE GROUP (A): 66.4050 33.6520 16.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0591 REMARK 3 T33: 0.0747 T12: 0.0005 REMARK 3 T13: 0.0379 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 3.0072 L22: 2.0829 REMARK 3 L33: 5.1202 L12: 2.5014 REMARK 3 L13: 1.0023 L23: 0.9244 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: -0.3235 S13: 0.2490 REMARK 3 S21: 0.1408 S22: -0.2355 S23: 0.2033 REMARK 3 S31: -0.3216 S32: -0.3412 S33: 0.0161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0070 REMARK 200 STARTING MODEL: PDB ENTRY 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SUCCINATE, 15% PEG 3350 , PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.41300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.05550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.41300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.05550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 LEU A 37 REMARK 465 TYR A 38 REMARK 465 ASN A 39 REMARK 465 ASP A 40 REMARK 465 GLY A 41 REMARK 465 ASN A 42 REMARK 465 ARG A 43 REMARK 465 ASP A 44 REMARK 465 GLN A 45 REMARK 465 ARG A 46 REMARK 465 ASN A 47 REMARK 465 PHE A 48 REMARK 465 GLY A 49 REMARK 465 ARG A 50 REMARK 465 ASN A 51 REMARK 465 GLN A 52 REMARK 465 ARG A 53 REMARK 465 ASN A 54 REMARK 465 ASN A 55 REMARK 465 ASN A 56 REMARK 465 SER A 57 REMARK 465 ASN A 58 REMARK 465 ARG A 59 REMARK 465 TYR A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 465 PHE A 65 REMARK 465 ASN A 66 REMARK 465 SER A 67 REMARK 465 ARG A 68 REMARK 465 PRO A 69 REMARK 465 ARG A 70 REMARK 465 THR A 71 REMARK 465 ARG A 72 REMARK 465 SER A 73 REMARK 465 ARG A 74 REMARK 465 GLU A 75 REMARK 465 ASP A 76 REMARK 465 ASP A 77 REMARK 465 ASP A 78 REMARK 465 GLU A 79 REMARK 465 VAL A 80 REMARK 465 HIS A 81 REMARK 465 PHE A 82 REMARK 465 ASP A 83 REMARK 465 LYS A 84 REMARK 465 THR A 85 REMARK 465 THR A 86 REMARK 465 PHE A 87 REMARK 465 TYR A 597 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 LYS A 314 CE NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LYS A 409 CE NZ REMARK 470 LYS A 424 CD CE NZ REMARK 470 LYS A 482 CD CE NZ REMARK 470 ARG A 489 CD NE CZ NH1 NH2 REMARK 470 ARG A 538 NE CZ NH1 NH2 REMARK 470 LYS A 542 CE NZ REMARK 470 ARG A 545 CZ NH1 NH2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 575 NE CZ NH1 NH2 REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 589 CE NZ REMARK 470 ARG A 595 NE CZ NH1 NH2 REMARK 470 ASP A 596 CG OD1 OD2 REMARK 470 U B 2 C2 O2 N3 C4 O4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1B ADP A 1000 AL ALF A 900 1.97 REMARK 500 AL ALF A 900 O HOH A 1005 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 55.10 -101.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 800 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1000 O2B REMARK 620 2 HOH A1001 O 85.2 REMARK 620 3 HOH A1002 O 101.4 172.8 REMARK 620 4 HOH A1003 O 97.5 91.6 84.7 REMARK 620 5 HOH A1004 O 174.2 89.4 84.1 84.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I5X RELATED DB: PDB REMARK 900 RELATED ID: 3I5Y RELATED DB: PDB REMARK 900 RELATED ID: 3I61 RELATED DB: PDB DBREF 3I62 A 37 597 UNP P15424 MS116_YEAST 37 597 DBREF 3I62 B 1 10 PDB 3I62 3I62 1 10 SEQADV 3I62 GLY A 35 UNP P15424 EXPRESSION TAG SEQADV 3I62 SER A 36 UNP P15424 EXPRESSION TAG SEQRES 1 A 563 GLY SER LEU TYR ASN ASP GLY ASN ARG ASP GLN ARG ASN SEQRES 2 A 563 PHE GLY ARG ASN GLN ARG ASN ASN ASN SER ASN ARG TYR SEQRES 3 A 563 ARG ASN SER ARG PHE ASN SER ARG PRO ARG THR ARG SER SEQRES 4 A 563 ARG GLU ASP ASP ASP GLU VAL HIS PHE ASP LYS THR THR SEQRES 5 A 563 PHE SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SER SEQRES 6 A 563 LYS GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY VAL SEQRES 7 A 563 LEU ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET GLU SEQRES 8 A 563 PHE PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE LYS SEQRES 9 A 563 PRO ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA ARG SEQRES 10 A 563 ALA LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU ILE SEQRES 11 A 563 PRO ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SER SEQRES 12 A 563 GLN TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR ARG SEQRES 13 A 563 ASP LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS ILE SEQRES 14 A 563 HIS ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS VAL SEQRES 15 A 563 SER LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET ASN SEQRES 16 A 563 LYS MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA THR SEQRES 17 A 563 PRO GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER ASN SEQRES 18 A 563 LYS PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP GLU SEQRES 19 A 563 ALA ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP LEU SEQRES 20 A 563 GLU THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER LYS SEQRES 21 A 563 SER ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA THR SEQRES 22 A 563 LEU ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE MET SEQRES 23 A 563 ASN LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP LYS SEQRES 24 A 563 ASN GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER VAL SEQRES 25 A 563 VAL ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA ALA SEQRES 26 A 563 VAL GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SER SEQRES 27 A 563 ASN TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS PHE SEQRES 28 A 563 THR SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE LYS SEQRES 29 A 563 LYS ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE THR SEQRES 30 A 563 GLN ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS LYS SEQRES 31 A 563 ASP GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY ALA SEQRES 32 A 563 ARG GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU GLN SEQRES 33 A 563 ILE GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS ARG SEQRES 34 A 563 ILE GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SER SEQRES 35 A 563 VAL LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL ARG SEQRES 36 A 563 GLU LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS GLN SEQRES 37 A 563 GLU LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU VAL SEQRES 38 A 563 LEU GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER ASP SEQRES 39 A 563 ILE VAL ILE SER LEU ILE SER SER TYR ARG SER CYS ILE SEQRES 40 A 563 LYS GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO GLU SEQRES 41 A 563 ILE ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO GLN SEQRES 42 A 563 LEU LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS LEU SEQRES 43 A 563 GLY LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE GLU SEQRES 44 A 563 ILE ARG ASP TYR SEQRES 1 B 10 U U U U U U U U U U HET ADP A1000 27 HET ALF A 900 5 HET MG A 800 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 ALF AL F4 1- FORMUL 5 MG MG 2+ FORMUL 6 HOH *298(H2 O) HELIX 1 1 THR A 103 GLU A 110 1 8 HELIX 2 2 ASP A 114 ARG A 123 1 10 HELIX 3 3 THR A 130 SER A 142 1 13 HELIX 4 4 GLY A 157 THR A 173 1 17 HELIX 5 5 THR A 189 ASN A 207 1 19 HELIX 6 6 TYR A 208 LYS A 211 5 4 HELIX 7 7 ASP A 223 ARG A 235 1 13 HELIX 8 8 THR A 242 PHE A 258 1 17 HELIX 9 9 GLU A 268 LEU A 273 1 6 HELIX 10 10 PHE A 277 ASN A 292 1 16 HELIX 11 11 ASP A 310 ALA A 316 1 7 HELIX 12 12 ASN A 317 MET A 320 5 4 HELIX 13 13 ALA A 353 ARG A 370 1 18 HELIX 14 14 THR A 382 LYS A 398 1 17 HELIX 15 15 THR A 411 ASP A 425 1 15 HELIX 16 16 ASP A 434 ALA A 437 5 4 HELIX 17 17 LEU A 457 GLY A 465 1 9 HELIX 18 18 GLU A 484 ASN A 496 1 13 HELIX 19 19 SER A 508 ALA A 518 1 11 HELIX 20 20 GLU A 522 CYS A 540 1 19 HELIX 21 21 CYS A 540 ARG A 545 1 6 HELIX 22 22 SER A 547 SER A 557 1 11 HELIX 23 23 SER A 557 LEU A 563 1 7 HELIX 24 24 SER A 573 GLY A 581 1 9 HELIX 25 25 SER A 585 MET A 591 1 7 SHEET 1 A 8 LYS A 89 VAL A 93 0 SHEET 2 A 8 GLU A 324 ASP A 329 1 O CYS A 325 N ILE A 91 SHEET 3 A 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 328 SHEET 4 A 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 A 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 A 8 ALA A 183 VAL A 186 1 N VAL A 186 O VAL A 265 SHEET 7 A 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 A 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 B 7 ILE A 403 PHE A 406 0 SHEET 2 B 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 B 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 B 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 B 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 B 7 ILE A 342 SER A 349 1 N VAL A 347 O LEU A 478 SHEET 7 B 7 LYS A 501 TYR A 505 1 O GLU A 503 N ILE A 348 SHEET 1 C 2 ILE A 570 VAL A 572 0 SHEET 2 C 2 PHE A 592 ILE A 594 1 O GLU A 593 N VAL A 572 LINK MG MG A 800 O2B ADP A1000 1555 1555 2.02 LINK MG MG A 800 O HOH A1001 1555 1555 2.17 LINK MG MG A 800 O HOH A1002 1555 1555 2.01 LINK MG MG A 800 O HOH A1003 1555 1555 2.04 LINK MG MG A 800 O HOH A1004 1555 1555 2.08 SITE 1 AC1 22 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC1 22 GLY A 155 THR A 156 GLY A 157 LYS A 158 SITE 3 AC1 22 THR A 159 PHE A 160 ASP A 441 ARG A 469 SITE 4 AC1 22 SER A 470 MG A 800 ALF A 900 HOH A1001 SITE 5 AC1 22 HOH A1003 HOH A1011 HOH A1072 HOH A1104 SITE 6 AC1 22 HOH A1107 HOH A1217 SITE 1 AC2 14 THR A 154 GLY A 155 LYS A 158 GLU A 268 SITE 2 AC2 14 GLY A 439 ARG A 466 ARG A 469 MG A 800 SITE 3 AC2 14 ADP A1000 HOH A1001 HOH A1002 HOH A1004 SITE 4 AC2 14 HOH A1005 HOH A1051 SITE 1 AC3 6 ALF A 900 ADP A1000 HOH A1001 HOH A1002 SITE 2 AC3 6 HOH A1003 HOH A1004 CRYST1 88.826 126.111 55.770 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017931 0.00000