PDB Short entry for 3I79 HEADER TRANSFERASE 08-JUL-09 3I79 TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS PROTEIN KINASE, CALMODULIN, EF HAND, BUMPED KINASE INHIBITOR, ATP- KEYWDS 2 BINDING, KINASE, NUCLEOTIDE-BINDING, SERINE/THREONINE-PROTEIN KEYWDS 3 KINASE, STRUCTURAL GENOMICS, MEDICAL STRUCTURAL GENOMICS OF KEYWDS 4 PATHOGENIC PROTOZOA, MSGPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 8 21-FEB-24 3I79 1 REMARK SEQADV REVDAT 7 01-NOV-17 3I79 1 REMARK REVDAT 6 12-NOV-14 3I79 1 REMARK REVDAT 5 13-JUL-11 3I79 1 VERSN REVDAT 4 21-JUL-10 3I79 1 REMARK REVDAT 3 12-MAY-10 3I79 1 JRNL REVDAT 2 28-APR-10 3I79 1 JRNL SOURCE REVDAT 1 11-AUG-09 3I79 0 JRNL AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, JRNL AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, JRNL AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, JRNL AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS JRNL TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A JRNL TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20436472 JRNL DOI 10.1038/NSMB.1818 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, REMARK 1 AUTH 3 C.L.VERLINDE,A.C.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF REMARK 1 TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM REMARK 1 TITL 3 AND T. GONDII. REMARK 1 REF ACS MED CHEM LETT V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 21116453 REMARK 1 DOI 10.1021/ML100096T REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0096 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3739 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2609 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5026 ; 0.866 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6384 ; 0.769 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 4.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;36.314 ;24.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;13.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4108 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 733 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 1.177 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 932 ; 0.265 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3661 ; 2.025 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1471 ; 2.143 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1361 ; 3.471 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4720 17.4440 72.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.1485 REMARK 3 T33: 0.2006 T12: -0.0275 REMARK 3 T13: -0.0789 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.5352 L22: 5.0096 REMARK 3 L33: 4.8438 L12: -2.5338 REMARK 3 L13: 1.5174 L23: -1.3232 REMARK 3 S TENSOR REMARK 3 S11: -0.1579 S12: 0.0213 S13: 0.3163 REMARK 3 S21: 0.1554 S22: 0.0460 S23: -0.1739 REMARK 3 S31: -0.5108 S32: -0.0227 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1150 14.9220 58.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.2119 REMARK 3 T33: 0.2184 T12: -0.0139 REMARK 3 T13: -0.0188 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.7495 L22: 1.9170 REMARK 3 L33: 2.9999 L12: -0.4768 REMARK 3 L13: 0.2979 L23: -0.6663 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.0232 S13: 0.0625 REMARK 3 S21: 0.0406 S22: -0.1114 S23: -0.1334 REMARK 3 S31: 0.1219 S32: 0.1854 S33: 0.0817 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6280 22.5220 41.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2213 REMARK 3 T33: 0.1221 T12: 0.0503 REMARK 3 T13: -0.0202 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.2812 L22: 3.6115 REMARK 3 L33: 2.1851 L12: -0.3340 REMARK 3 L13: 0.2332 L23: 0.5259 REMARK 3 S TENSOR REMARK 3 S11: 0.0903 S12: 0.2552 S13: 0.0585 REMARK 3 S21: -0.5442 S22: -0.1442 S23: -0.0482 REMARK 3 S31: 0.0887 S32: 0.1628 S33: 0.0539 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 315 A 387 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3560 28.8630 68.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.1802 REMARK 3 T33: 0.3439 T12: 0.0751 REMARK 3 T13: -0.0420 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.1013 L22: 2.4711 REMARK 3 L33: 8.6606 L12: -0.0988 REMARK 3 L13: -0.0259 L23: 2.9042 REMARK 3 S TENSOR REMARK 3 S11: -0.1118 S12: 0.0979 S13: -0.0007 REMARK 3 S21: 0.6349 S22: 0.2199 S23: -0.3714 REMARK 3 S31: 0.7607 S32: 0.2137 S33: -0.1082 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 388 A 442 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5720 26.1150 79.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2258 REMARK 3 T33: 0.5668 T12: 0.0788 REMARK 3 T13: -0.3285 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.4142 L22: 19.5609 REMARK 3 L33: 11.3114 L12: -8.4739 REMARK 3 L13: -2.3782 L23: -1.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: 0.5142 S13: 0.5457 REMARK 3 S21: -0.1894 S22: -0.7557 S23: -1.5158 REMARK 3 S31: 0.1779 S32: -0.5434 S33: 0.6096 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 443 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0480 39.6570 53.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.2416 REMARK 3 T33: 0.3089 T12: 0.0531 REMARK 3 T13: 0.0150 T23: 0.0900 REMARK 3 L TENSOR REMARK 3 L11: 8.6664 L22: 0.9917 REMARK 3 L33: 5.6931 L12: -2.8575 REMARK 3 L13: -3.3942 L23: 1.3592 REMARK 3 S TENSOR REMARK 3 S11: 0.1521 S12: 0.2902 S13: 0.1846 REMARK 3 S21: -0.0212 S22: 0.0162 S23: -0.0208 REMARK 3 S31: -0.3597 S32: -0.0443 S33: -0.1683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES ARE RESIDUAL ONLY REMARK 4 REMARK 4 3I79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-09; 22-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923; 0.97923 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARUSA MARMOSAIC -325 CCD; REMARK 200 MARUSA MARMOSAIC -325 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M TRI-AMMONIUM REMARK 280 CITRATE; CRYOPROTECTED WITH 15% ETHYLENE GLYCOL, PH 6.5, SITTING REMARK 280 DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.93050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 ASP A 417 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 TYR A 421 REMARK 465 ILE A 422 REMARK 465 GLU A 423 REMARK 465 TYR A 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -7.30 79.56 REMARK 500 ASP A 120 -169.52 -129.01 REMARK 500 ARG A 173 -29.89 79.88 REMARK 500 PHE A 269 44.91 -107.31 REMARK 500 ASN A 370 108.13 -161.80 REMARK 500 LEU A 375 93.72 -66.33 REMARK 500 ASP A 415 -153.22 48.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR NM-PP1 REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR NA-PP2 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR NM-PP1 DBREF 3I79 A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3I79 GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I79 PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I79 GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I79 SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I79 MET A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I79 MET A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET EDO A 701 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *75(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LYS A 104 1 13 HELIX 3 3 GLU A 135 SER A 142 1 8 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 LYS A 207 ILE A 212 1 6 HELIX 7 7 GLY A 213 ILE A 218 1 6 HELIX 8 8 ALA A 219 GLY A 225 1 7 HELIX 9 9 GLU A 229 GLY A 246 1 18 HELIX 10 10 ASN A 254 GLY A 265 1 12 HELIX 11 11 LEU A 271 VAL A 277 5 7 HELIX 12 12 SER A 278 LEU A 289 1 12 HELIX 13 13 VAL A 292 ARG A 296 5 5 HELIX 14 14 SER A 298 ASP A 304 1 7 HELIX 15 15 HIS A 305 THR A 312 1 8 HELIX 16 16 GLU A 314 VAL A 320 5 7 HELIX 17 17 LEU A 323 ASP A 368 1 46 HELIX 18 18 ASP A 376 GLY A 392 1 17 HELIX 19 19 ASP A 399 ASP A 412 1 14 HELIX 20 20 GLU A 426 THR A 436 1 11 HELIX 21 21 THR A 436 ASP A 451 1 16 HELIX 22 22 SER A 460 SER A 470 1 11 HELIX 23 23 ASP A 473 ASP A 485 1 13 HELIX 24 24 PHE A 494 LEU A 504 1 11 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O VAL A 65 N GLY A 58 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 79 N ILE A 66 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 LYS A 457 SER A 459 0 SHEET 2 C 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 4 LYS A 211 GLY A 213 ALA A 215 VAL A 469 CRYST1 48.144 71.861 67.265 90.00 102.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020771 0.000000 0.004788 0.00000 SCALE2 0.000000 0.013916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015256 0.00000