PDB Short entry for 3I7C HEADER TRANSFERASE 08-JUL-09 3I7C TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH BUMPED KINASE INHIBITOR NA-PP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1, TGCDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS PROTEIN KINASE, CALMODULIN, EF HAND, BUMPED KINASE INHIBITOR, ATP- KEYWDS 2 BINDING, KINASE, NUCLEOTIDE-BINDING, SERINE/THREONINE-PROTEIN KEYWDS 3 KINASE, STRUCTURAL GENOMICS, MEDICAL STRUCTURAL GENOMICS OF KEYWDS 4 PATHOGENIC PROTOZOA, MSGPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 9 22-NOV-23 3I7C 1 REMARK REVDAT 8 06-SEP-23 3I7C 1 REMARK SEQADV LINK REVDAT 7 01-NOV-17 3I7C 1 REMARK REVDAT 6 12-NOV-14 3I7C 1 REMARK REVDAT 5 13-JUL-11 3I7C 1 VERSN REVDAT 4 21-JUL-10 3I7C 1 REMARK REVDAT 3 12-MAY-10 3I7C 1 JRNL REVDAT 2 28-APR-10 3I7C 1 JRNL REVDAT 1 09-FEB-10 3I7C 0 JRNL AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, JRNL AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, JRNL AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, JRNL AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS JRNL TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A JRNL TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20436472 JRNL DOI 10.1038/NSMB.1818 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, REMARK 1 AUTH 3 C.L.VERLINDE,A.C.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF REMARK 1 TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM REMARK 1 TITL 3 AND T. GONDII. REMARK 1 REF ACS MED CHEM LETT V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 21116453 REMARK 1 DOI 10.1021/ML100096T REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0096 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 30780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3868 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2709 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5205 ; 0.978 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6620 ; 0.762 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 4.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.764 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;13.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.923 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4231 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 759 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2311 ; 1.385 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 948 ; 0.383 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3741 ; 2.331 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 2.850 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1459 ; 4.492 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9100 13.2740 73.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.1097 REMARK 3 T33: 0.1329 T12: 0.0020 REMARK 3 T13: -0.0411 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.2950 L22: 4.9593 REMARK 3 L33: 4.3437 L12: -1.6463 REMARK 3 L13: 1.8234 L23: -1.9798 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: -0.1014 S13: 0.0054 REMARK 3 S21: 0.3365 S22: 0.0005 S23: -0.2678 REMARK 3 S31: -0.1220 S32: 0.1206 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4850 14.3420 59.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.1165 REMARK 3 T33: 0.1616 T12: 0.0054 REMARK 3 T13: -0.0044 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8368 L22: 1.2356 REMARK 3 L33: 2.2959 L12: -0.2270 REMARK 3 L13: 0.5242 L23: -0.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0299 S13: 0.0569 REMARK 3 S21: 0.0311 S22: -0.0283 S23: -0.0684 REMARK 3 S31: 0.1046 S32: 0.0830 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4770 21.9440 41.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.1300 REMARK 3 T33: 0.1102 T12: 0.0199 REMARK 3 T13: -0.0088 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.6254 L22: 2.7760 REMARK 3 L33: 2.1204 L12: -0.2188 REMARK 3 L13: -0.1408 L23: 0.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.0704 S13: 0.0718 REMARK 3 S21: -0.3051 S22: -0.0441 S23: -0.0607 REMARK 3 S31: 0.0025 S32: 0.0978 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0870 22.5360 48.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.1986 REMARK 3 T33: 0.3005 T12: -0.0364 REMARK 3 T13: 0.1068 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.6791 L22: 5.0635 REMARK 3 L33: 9.4833 L12: 0.4414 REMARK 3 L13: 1.5233 L23: 6.0521 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.1394 S13: -0.1939 REMARK 3 S21: 0.1856 S22: -0.0401 S23: -0.0477 REMARK 3 S31: 0.4438 S32: 0.0041 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1760 32.1100 86.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.1482 REMARK 3 T33: 0.0638 T12: 0.1359 REMARK 3 T13: 0.0123 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.3110 L22: 8.2666 REMARK 3 L33: 12.8717 L12: -4.5757 REMARK 3 L13: 7.3642 L23: -7.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.3588 S12: -0.6129 S13: -0.1848 REMARK 3 S21: 0.3797 S22: 0.7590 S23: 0.3511 REMARK 3 S31: -0.8221 S32: -0.9157 S33: -0.4002 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 395 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8580 25.7840 81.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1211 REMARK 3 T33: 0.1314 T12: 0.0251 REMARK 3 T13: -0.0768 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.1772 L22: 1.9793 REMARK 3 L33: 6.4258 L12: -1.4699 REMARK 3 L13: 1.5671 L23: -2.6598 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.1124 S13: -0.0291 REMARK 3 S21: -0.0729 S22: -0.1649 S23: -0.0353 REMARK 3 S31: 0.0949 S32: 0.4446 S33: 0.0602 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1970 38.0260 53.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.1178 REMARK 3 T33: 0.2153 T12: 0.0138 REMARK 3 T13: 0.0064 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.6816 L22: 1.0523 REMARK 3 L33: 3.9919 L12: -1.7858 REMARK 3 L13: -1.0511 L23: 0.9560 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.2787 S13: 0.2078 REMARK 3 S21: 0.0915 S22: 0.0477 S23: 0.0590 REMARK 3 S31: -0.3040 S32: 0.0292 S33: -0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES ARE RESIDUAL ONLY REMARK 4 REMARK 4 3I7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30803 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3I79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.25 M AMMONIUM CITRATE, REMARK 280 4 MM NA-PP2; DIRECTLY FROZEN FROM MOTHER LIQUOR, PH 6.5, SITTING REMARK 280 DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.26100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MSE A -1 REMARK 465 MSE A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MSE A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -10.43 77.02 REMARK 500 ASP A 120 -163.64 -126.38 REMARK 500 ARG A 173 -27.29 76.42 REMARK 500 ASP A 195 11.96 81.87 REMARK 500 GLU A 314 -80.43 -14.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK2 A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 APO FORM OF SAME PROTEIN REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR NM-PP1 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR NM-PP1 DBREF 3I7C A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3I7C GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7C PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7C GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7C SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7C MSE A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7C MSE A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MSE MSE ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MSE PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MSE LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MSE HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MSE LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MSE LEU THR TYR VAL PRO SER MSE ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MSE GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MSE ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MSE ARG MSE LYS GLY GLN ASP ALA SER MSE LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MSE ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MSE PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MSE LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN MODRES 3I7C MSE A 112 MET SELENOMETHIONINE MODRES 3I7C MSE A 165 MET SELENOMETHIONINE MODRES 3I7C MSE A 208 MET SELENOMETHIONINE MODRES 3I7C MSE A 288 MET SELENOMETHIONINE MODRES 3I7C MSE A 295 MET SELENOMETHIONINE MODRES 3I7C MSE A 347 MET SELENOMETHIONINE MODRES 3I7C MSE A 367 MET SELENOMETHIONINE MODRES 3I7C MSE A 388 MET SELENOMETHIONINE MODRES 3I7C MSE A 390 MET SELENOMETHIONINE MODRES 3I7C MSE A 397 MET SELENOMETHIONINE MODRES 3I7C MSE A 432 MET SELENOMETHIONINE MODRES 3I7C MSE A 449 MET SELENOMETHIONINE MODRES 3I7C MSE A 500 MET SELENOMETHIONINE HET MSE A 112 8 HET MSE A 165 8 HET MSE A 208 8 HET MSE A 288 8 HET MSE A 295 13 HET MSE A 347 8 HET MSE A 367 8 HET MSE A 388 8 HET MSE A 390 8 HET MSE A 397 8 HET MSE A 432 8 HET MSE A 449 8 HET MSE A 500 8 HET BK2 A 701 24 HETNAM MSE SELENOMETHIONINE HETNAM BK2 1-TERT-BUTYL-3-NAPHTHALEN-2-YL-1H-PYRAZOLO[3,4- HETNAM 2 BK2 D]PYRIMIDIN-4-AMINE HETSYN BK2 4-AMINO-1-TERT-BUTYL-3-(2-NAPHTHYL)PYRAZOLO[3,4- HETSYN 2 BK2 D]PYRIMIDINE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 BK2 C19 H19 N5 FORMUL 3 HOH *170(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LEU A 106 1 15 HELIX 3 3 GLU A 135 ILE A 141 1 7 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 GLY A 197 PHE A 202 1 6 HELIX 7 7 LYS A 207 ILE A 212 1 6 HELIX 8 8 GLY A 213 ILE A 218 1 6 HELIX 9 9 ALA A 219 GLY A 225 1 7 HELIX 10 10 LYS A 230 GLY A 246 1 17 HELIX 11 11 ASN A 254 GLY A 265 1 12 HELIX 12 12 LEU A 271 LYS A 276 5 6 HELIX 13 13 SER A 278 LEU A 289 1 12 HELIX 14 14 VAL A 292 ARG A 296 5 5 HELIX 15 15 SER A 298 ASP A 304 1 7 HELIX 16 16 HIS A 305 THR A 312 1 8 HELIX 17 17 LEU A 323 ASP A 368 1 46 HELIX 18 18 ARG A 377 GLY A 392 1 16 HELIX 19 19 ASP A 394 LEU A 398 5 5 HELIX 20 20 ASP A 399 VAL A 414 1 16 HELIX 21 21 TYR A 424 ASP A 451 1 28 HELIX 22 22 SER A 460 SER A 470 1 11 HELIX 23 23 ASP A 473 ASP A 485 1 13 HELIX 24 24 PHE A 494 LEU A 504 1 11 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 81 N GLU A 64 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 GLN A 374 ASP A 376 0 SHEET 2 C 2 TYR A 421 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 D 2 LYS A 457 SER A 459 0 SHEET 2 D 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 LINK C ILE A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N LYS A 113 1555 1555 1.32 LINK C TYR A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N HIS A 166 1555 1555 1.33 LINK C LYS A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N LYS A 209 1555 1555 1.33 LINK C LYS A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N LEU A 289 1555 1555 1.34 LINK C SER A 294 N MSE A 295 1555 1555 1.34 LINK C MSE A 295 N ARG A 296 1555 1555 1.33 LINK C TYR A 346 N MSE A 347 1555 1555 1.33 LINK C MSE A 347 N GLY A 348 1555 1555 1.33 LINK C LYS A 366 N MSE A 367 1555 1555 1.33 LINK C MSE A 367 N ASP A 368 1555 1555 1.33 LINK C LEU A 387 N MSE A 388 1555 1555 1.33 LINK C MSE A 388 N ARG A 389 1555 1555 1.33 LINK C ARG A 389 N MSE A 390 1555 1555 1.33 LINK C MSE A 390 N LYS A 391 1555 1555 1.33 LINK C SER A 396 N MSE A 397 1555 1555 1.34 LINK C MSE A 397 N LEU A 398 1555 1555 1.33 LINK C ALA A 431 N MSE A 432 1555 1555 1.33 LINK C MSE A 432 N ASP A 433 1555 1555 1.34 LINK C ARG A 448 N MSE A 449 1555 1555 1.33 LINK C MSE A 449 N PHE A 450 1555 1555 1.33 LINK C GLN A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N LEU A 501 1555 1555 1.33 SITE 1 AC1 10 LEU A 57 VAL A 65 ALA A 78 MSE A 112 SITE 2 AC1 10 LEU A 126 GLU A 129 TYR A 131 LEU A 181 SITE 3 AC1 10 ILE A 194 ASP A 195 CRYST1 48.139 72.522 67.116 90.00 103.76 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020773 0.000000 0.005087 0.00000 SCALE2 0.000000 0.013789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015340 0.00000