PDB Short entry for 3ICI HEADER ISOMERASE 17-JUL-09 3ICI TITLE CRYSTAL STRUCTURE OF CYCLOPHILIN B IN COMPLEX WITH CALMEGIN FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-216; COMPND 5 SYNONYM: PPIASE, ROTAMASE, CYCLOPHILIN B, S-CYCLOPHILIN, SCYLP, CYP- COMPND 6 S1; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CALNEXIN; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: P-DOMAIN FRAGMENT: RESIDUES 317-350; COMPND 13 SYNONYM: PP90; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIB, CYPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 13 ORGANISM_COMMON: DOG; SOURCE 14 ORGANISM_TAXID: 9615; SOURCE 15 GENE: CANX; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN-PROTEIN COMPLEX, ENDOPLASMIC RETICULUM, GLYCOPROTEIN, KEYWDS 2 ISOMERASE, ROTAMASE, CHAPERONE, LECTIN, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 3 TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 5 06-SEP-23 3ICI 1 REMARK SEQADV LINK REVDAT 4 01-DEC-10 3ICI 1 DBREF KEYWDS SEQADV REVDAT 3 24-NOV-10 3ICI 1 JRNL REVDAT 2 29-SEP-10 3ICI 1 JRNL SOURCE REVDAT 1 21-JUL-10 3ICI 0 JRNL AUTH G.KOZLOV,S.BASTOS-ARISTIZABAL,P.MAATTANEN,A.ROSENAUER, JRNL AUTH 2 F.ZHENG,A.KILLIKELLY,J.F.TREMPE,D.Y.THOMAS,K.GEHRING JRNL TITL STRUCTURAL BASIS OF CYCLOPHILIN B BINDING BY THE JRNL TITL 2 CALNEXIN/CALRETICULIN P-DOMAIN. JRNL REF J.BIOL.CHEM. V. 285 35551 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20801878 JRNL DOI 10.1074/JBC.M110.160101 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 37796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 1.09000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.36000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3100 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4171 ; 1.394 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 5.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;34.790 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;14.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;10.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2316 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1476 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2121 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 365 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.096 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.017 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 0.865 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3062 ; 1.436 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 2.378 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 3.854 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ICI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9995 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1CYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG 8000, 10MM ZNCL2, 0.1M REMARK 280 TRIS BUFFER, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 5 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 GLY C 313 REMARK 465 SER C 314 REMARK 465 HIS C 315 REMARK 465 MET C 316 REMARK 465 ASP C 317 REMARK 465 GLU C 318 REMARK 465 PRO C 319 REMARK 465 LYS C 320 REMARK 465 PHE C 321 REMARK 465 ILE C 322 REMARK 465 PRO C 323 REMARK 465 ASP C 324 REMARK 465 PRO C 325 REMARK 465 ASN C 326 REMARK 465 ALA C 327 REMARK 465 GLU C 328 REMARK 465 LYS C 329 REMARK 465 PRO C 330 REMARK 465 ASP C 331 REMARK 465 TRP C 341 REMARK 465 GLU C 342 REMARK 465 ALA C 343 REMARK 465 PRO C 344 REMARK 465 ARG C 345 REMARK 465 ILE C 346 REMARK 465 SER C 347 REMARK 465 ASN C 348 REMARK 465 PRO C 349 REMARK 465 ALA C 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 335 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 558 O HOH B 965 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 996 O HOH B 997 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 58 -6.15 71.84 REMARK 500 PHE A 68 -74.88 -139.65 REMARK 500 ASP B 2 10.74 -58.60 REMARK 500 ASN B 58 -3.24 74.54 REMARK 500 PHE B 68 -76.68 -140.94 REMARK 500 PHE B 137 -1.75 -141.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -3 O REMARK 620 2 ASP A 2 OD2 76.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B -3 O REMARK 620 2 ASP B 2 OD2 81.9 REMARK 620 3 HOH B 501 O 166.9 99.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ICH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYCLOPHILIN B AT 1.2 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE OF ENTITY 2 (CHAIN C) REMARK 999 CORRESPONDS TO RESIDUES 317-350 OF DOG CALMEGIN, REMARK 999 NCBI REFERENCE SEQUENCE XP_533285. DBREF 3ICI A 2 184 UNP P23284 PPIB_HUMAN 34 216 DBREF 3ICI B 2 184 UNP P23284 PPIB_HUMAN 34 216 DBREF 3ICI C 313 350 PDB D9N169 D9N169_CANFA 1 38 SEQADV 3ICI GLY A -3 UNP P23284 EXPRESSION TAG SEQADV 3ICI PRO A -2 UNP P23284 EXPRESSION TAG SEQADV 3ICI LEU A -1 UNP P23284 EXPRESSION TAG SEQADV 3ICI GLY A 0 UNP P23284 EXPRESSION TAG SEQADV 3ICI SER A 1 UNP P23284 EXPRESSION TAG SEQADV 3ICI GLY B -3 UNP P23284 EXPRESSION TAG SEQADV 3ICI PRO B -2 UNP P23284 EXPRESSION TAG SEQADV 3ICI LEU B -1 UNP P23284 EXPRESSION TAG SEQADV 3ICI GLY B 0 UNP P23284 EXPRESSION TAG SEQADV 3ICI SER B 1 UNP P23284 EXPRESSION TAG SEQRES 1 A 188 GLY PRO LEU GLY SER ASP GLU LYS LYS LYS GLY PRO LYS SEQRES 2 A 188 VAL THR VAL LYS VAL TYR PHE ASP LEU ARG ILE GLY ASP SEQRES 3 A 188 GLU ASP VAL GLY ARG VAL ILE PHE GLY LEU PHE GLY LYS SEQRES 4 A 188 THR VAL PRO LYS THR VAL ASP ASN PHE VAL ALA LEU ALA SEQRES 5 A 188 THR GLY GLU LYS GLY PHE GLY TYR LYS ASN SER LYS PHE SEQRES 6 A 188 HIS ARG VAL ILE LYS ASP PHE MET ILE GLN GLY GLY ASP SEQRES 7 A 188 PHE THR ARG GLY ASP GLY THR GLY GLY LYS SER ILE TYR SEQRES 8 A 188 GLY GLU ARG PHE PRO ASP GLU ASN PHE LYS LEU LYS HIS SEQRES 9 A 188 TYR GLY PRO GLY TRP VAL SER MET ALA ASN ALA GLY LYS SEQRES 10 A 188 ASP THR ASN GLY SER GLN PHE PHE ILE THR THR VAL LYS SEQRES 11 A 188 THR ALA TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY LYS SEQRES 12 A 188 VAL LEU GLU GLY MET GLU VAL VAL ARG LYS VAL GLU SER SEQRES 13 A 188 THR LYS THR ASP SER ARG ASP LYS PRO LEU LYS ASP VAL SEQRES 14 A 188 ILE ILE ALA ASP CYS GLY LYS ILE GLU VAL GLU LYS PRO SEQRES 15 A 188 PHE ALA ILE ALA LYS GLU SEQRES 1 B 188 GLY PRO LEU GLY SER ASP GLU LYS LYS LYS GLY PRO LYS SEQRES 2 B 188 VAL THR VAL LYS VAL TYR PHE ASP LEU ARG ILE GLY ASP SEQRES 3 B 188 GLU ASP VAL GLY ARG VAL ILE PHE GLY LEU PHE GLY LYS SEQRES 4 B 188 THR VAL PRO LYS THR VAL ASP ASN PHE VAL ALA LEU ALA SEQRES 5 B 188 THR GLY GLU LYS GLY PHE GLY TYR LYS ASN SER LYS PHE SEQRES 6 B 188 HIS ARG VAL ILE LYS ASP PHE MET ILE GLN GLY GLY ASP SEQRES 7 B 188 PHE THR ARG GLY ASP GLY THR GLY GLY LYS SER ILE TYR SEQRES 8 B 188 GLY GLU ARG PHE PRO ASP GLU ASN PHE LYS LEU LYS HIS SEQRES 9 B 188 TYR GLY PRO GLY TRP VAL SER MET ALA ASN ALA GLY LYS SEQRES 10 B 188 ASP THR ASN GLY SER GLN PHE PHE ILE THR THR VAL LYS SEQRES 11 B 188 THR ALA TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY LYS SEQRES 12 B 188 VAL LEU GLU GLY MET GLU VAL VAL ARG LYS VAL GLU SER SEQRES 13 B 188 THR LYS THR ASP SER ARG ASP LYS PRO LEU LYS ASP VAL SEQRES 14 B 188 ILE ILE ALA ASP CYS GLY LYS ILE GLU VAL GLU LYS PRO SEQRES 15 B 188 PHE ALA ILE ALA LYS GLU SEQRES 1 C 38 GLY SER HIS MET ASP GLU PRO LYS PHE ILE PRO ASP PRO SEQRES 2 C 38 ASN ALA GLU LYS PRO ASP ASP TRP ASN GLU ASP MET ASP SEQRES 3 C 38 GLY GLU TRP GLU ALA PRO ARG ILE SER ASN PRO ALA HET ZN A 401 1 HET MES A 402 12 HET ZN B 401 1 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MES C6 H13 N O4 S FORMUL 7 HOH *504(H2 O) HELIX 1 1 PRO A -2 LYS A 4 1 7 HELIX 2 2 VAL A 37 GLY A 50 1 14 HELIX 3 3 THR A 127 ASP A 131 5 5 HELIX 4 4 GLY A 143 SER A 152 1 10 HELIX 5 5 VAL B 37 GLY B 50 1 14 HELIX 6 6 THR B 127 ASP B 131 5 5 HELIX 7 7 GLY B 143 SER B 152 1 10 HELIX 8 8 ASN C 334 GLY C 339 1 6 SHEET 1 A 8 ARG A 63 ILE A 65 0 SHEET 2 A 8 MET A 69 GLY A 72 -1 O GLN A 71 N ARG A 63 SHEET 3 A 8 PHE A 120 THR A 123 -1 O ILE A 122 N ILE A 70 SHEET 4 A 8 TRP A 105 MET A 108 -1 N TRP A 105 O THR A 123 SHEET 5 A 8 VAL A 136 GLU A 142 -1 O GLY A 138 N VAL A 106 SHEET 6 A 8 GLU A 23 LEU A 32 -1 N ILE A 29 O LEU A 141 SHEET 7 A 8 LYS A 9 ILE A 20 -1 N VAL A 14 O PHE A 30 SHEET 8 A 8 VAL A 165 ALA A 180 -1 O PHE A 179 N VAL A 10 SHEET 1 B 8 ARG B 63 ILE B 65 0 SHEET 2 B 8 MET B 69 GLY B 72 -1 O MET B 69 N ILE B 65 SHEET 3 B 8 PHE B 120 THR B 123 -1 O ILE B 122 N ILE B 70 SHEET 4 B 8 TRP B 105 MET B 108 -1 N TRP B 105 O THR B 123 SHEET 5 B 8 VAL B 136 GLU B 142 -1 O GLY B 138 N VAL B 106 SHEET 6 B 8 GLU B 23 LEU B 32 -1 N ILE B 29 O LEU B 141 SHEET 7 B 8 LYS B 9 ILE B 20 -1 N VAL B 14 O PHE B 30 SHEET 8 B 8 VAL B 165 ALA B 180 -1 O PHE B 179 N VAL B 10 LINK O GLY A -3 ZN ZN A 401 1555 1555 2.42 LINK OD2 ASP A 2 ZN ZN A 401 1555 1555 1.89 LINK O GLY B -3 ZN ZN B 401 1555 1555 2.27 LINK OD2 ASP B 2 ZN ZN B 401 1555 1555 1.98 LINK ZN ZN B 401 O HOH B 501 1555 1555 2.30 SITE 1 AC1 4 GLY A -3 ASP A 2 HIS B 134 HOH B 928 SITE 1 AC2 10 LYS A 84 GLY A 88 GLU A 89 THR B 49 SITE 2 AC2 10 GLY B 171 LYS B 172 GLU B 174 HOH B 623 SITE 3 AC2 10 HOH B 812 HOH B 822 SITE 1 AC3 4 HIS A 134 GLY B -3 ASP B 2 HOH B 501 CRYST1 43.411 44.295 55.427 89.94 94.46 114.03 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023036 0.010272 0.002142 0.00000 SCALE2 0.000000 0.024719 0.000831 0.00000 SCALE3 0.000000 0.000000 0.018107 0.00000