PDB Short entry for 3IDH HEADER TRANSFERASE 21-JUL-09 3IDH TITLE HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-465; COMPND 5 SYNONYM: HEXOKINASE TYPE IV, HK IV, HEXOKINASE-4, HK4, HEXOKINASE-D; COMPND 6 EC: 2.7.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GLUCOKINASE, HEXOKINASE IV, ATP-BINDING, DIABETES MELLITUS, DISEASE KEYWDS 2 MUTATION, GLYCOLYSIS, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,L.GLUAIS,A.LAGARDE,J.A.BOUTIN,G.FERRY,L.VUILLARD REVDAT 5 01-NOV-23 3IDH 1 REMARK HETSYN REVDAT 4 29-JUL-20 3IDH 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 25-APR-12 3IDH 1 JRNL REVDAT 2 09-NOV-11 3IDH 1 JRNL VERSN REVDAT 1 28-JUL-10 3IDH 0 JRNL AUTH P.PETIT,M.ANTOINE,G.FERRY,J.A.BOUTIN,A.LAGARDE,L.GLUAIS, JRNL AUTH 2 R.VINCENTELLI,L.VUILLARD JRNL TITL THE ACTIVE CONFORMATION OF HUMAN GLUCOKINASE IS NOT ALTERED JRNL TITL 2 BY ALLOSTERIC ACTIVATORS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 929 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 22101819 JRNL DOI 10.1107/S0907444911036729 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1321 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.652 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3645 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2530 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4902 ; 1.309 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6140 ; 4.258 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 5.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.155 ;24.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;17.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4084 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 748 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 790 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2442 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1737 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1790 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.202 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.363 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2241 ; 0.619 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 939 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3596 ; 1.107 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 1.646 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1303 ; 2.488 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2170 4.4020 16.6810 REMARK 3 T TENSOR REMARK 3 T11: -0.1018 T22: -0.0482 REMARK 3 T33: -0.0604 T12: 0.0048 REMARK 3 T13: 0.0397 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8902 L22: 1.0840 REMARK 3 L33: 2.6503 L12: -0.2425 REMARK 3 L13: 1.9832 L23: -0.3496 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.2118 S13: 0.1876 REMARK 3 S21: 0.1178 S22: 0.0377 S23: 0.0715 REMARK 3 S31: -0.0435 S32: -0.1692 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4600 -4.5730 4.6430 REMARK 3 T TENSOR REMARK 3 T11: -0.0548 T22: -0.1116 REMARK 3 T33: 0.0172 T12: 0.0288 REMARK 3 T13: 0.1106 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.0334 L22: 6.8831 REMARK 3 L33: 7.0631 L12: 1.4761 REMARK 3 L13: 1.5904 L23: 2.9685 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.0182 S13: 0.6154 REMARK 3 S21: -0.2230 S22: 0.2368 S23: -0.3724 REMARK 3 S31: -0.3770 S32: 0.2466 S33: -0.2871 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6120 -16.2820 9.8150 REMARK 3 T TENSOR REMARK 3 T11: -0.0104 T22: -0.0542 REMARK 3 T33: -0.0495 T12: 0.0258 REMARK 3 T13: 0.0139 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0103 L22: 4.4833 REMARK 3 L33: 1.6758 L12: -1.0593 REMARK 3 L13: -0.3761 L23: 0.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0138 S13: 0.0072 REMARK 3 S21: -0.0460 S22: 0.0468 S23: -0.3548 REMARK 3 S31: 0.1543 S32: 0.1666 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2230 1.1720 20.3830 REMARK 3 T TENSOR REMARK 3 T11: -0.0360 T22: -0.0284 REMARK 3 T33: -0.0266 T12: 0.0078 REMARK 3 T13: -0.0077 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.5290 L22: 1.2328 REMARK 3 L33: 0.9331 L12: -0.2656 REMARK 3 L13: 0.1704 L23: 0.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0060 S13: 0.0181 REMARK 3 S21: 0.0916 S22: 0.0819 S23: -0.1489 REMARK 3 S31: -0.0385 S32: 0.1000 S33: -0.0613 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 271 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): -43.6810 -3.3010 2.8490 REMARK 3 T TENSOR REMARK 3 T11: -0.0292 T22: -0.0220 REMARK 3 T33: 0.0015 T12: -0.0308 REMARK 3 T13: -0.0370 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.9365 L22: 0.2948 REMARK 3 L33: 2.2214 L12: -0.5408 REMARK 3 L13: 1.1454 L23: -0.5051 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.0005 S13: -0.0530 REMARK 3 S21: -0.0822 S22: 0.0907 S23: 0.1115 REMARK 3 S31: 0.0971 S32: -0.1674 S33: -0.1193 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): -38.1340 2.3070 -10.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: -0.0124 REMARK 3 T33: -0.1219 T12: -0.0778 REMARK 3 T13: 0.0051 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.7620 L22: 6.5372 REMARK 3 L33: 2.4217 L12: 0.7299 REMARK 3 L13: 1.5826 L23: 1.2255 REMARK 3 S TENSOR REMARK 3 S11: -0.2408 S12: 0.4140 S13: -0.0667 REMARK 3 S21: -0.5421 S22: 0.2275 S23: -0.3848 REMARK 3 S31: -0.0694 S32: 0.2971 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): -35.8820 9.6940 8.7530 REMARK 3 T TENSOR REMARK 3 T11: -0.0126 T22: -0.0569 REMARK 3 T33: 0.0023 T12: 0.0101 REMARK 3 T13: -0.0222 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.6323 L22: 0.6507 REMARK 3 L33: 5.9858 L12: 0.8230 REMARK 3 L13: 3.7134 L23: 1.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: -0.1149 S13: 0.2571 REMARK 3 S21: -0.0353 S22: 0.0859 S23: 0.1142 REMARK 3 S31: -0.3452 S32: -0.1222 S33: 0.1602 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 400 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9480 13.9880 12.3100 REMARK 3 T TENSOR REMARK 3 T11: -0.0094 T22: -0.1047 REMARK 3 T33: -0.0195 T12: -0.0352 REMARK 3 T13: 0.0371 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.3568 L22: 2.9993 REMARK 3 L33: 2.6050 L12: -0.4576 REMARK 3 L13: 0.1814 L23: 1.7014 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.0612 S13: 0.2020 REMARK 3 S21: -0.1427 S22: 0.0718 S23: -0.0191 REMARK 3 S31: -0.3106 S32: 0.0212 S33: -0.0635 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3670 3.1270 11.2600 REMARK 3 T TENSOR REMARK 3 T11: -0.1278 T22: -0.0426 REMARK 3 T33: 0.0795 T12: -0.0527 REMARK 3 T13: 0.0808 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.3152 L22: 12.8496 REMARK 3 L33: 3.0021 L12: -6.2173 REMARK 3 L13: 0.8671 L23: -2.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.2506 S13: 0.4895 REMARK 3 S21: -0.6643 S22: -0.1325 S23: -1.2886 REMARK 3 S31: 0.1403 S32: 0.4069 S33: 0.1104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS; 2. RESIDUES 140-142 BELONG TO AN UNFOLDED REMARK 3 GROUP, AND THE OCCUPANCIES WERE SET TO 0. REMARK 4 REMARK 4 3IDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 458 REMARK 465 LYS A 459 REMARK 465 ALA A 460 REMARK 465 CYS A 461 REMARK 465 MET A 462 REMARK 465 LEU A 463 REMARK 465 GLY A 464 REMARK 465 GLN A 465 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 66 REMARK 475 GLU A 67 REMARK 475 GLY A 68 REMARK 475 LYS A 140 REMARK 475 HIS A 141 REMARK 475 LYS A 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 66 45.33 -78.99 REMARK 500 GLU A 67 -89.52 38.21 REMARK 500 SER A 69 -177.42 -178.33 REMARK 500 GLN A 138 12.13 56.50 REMARK 500 LYS A 140 -142.12 -52.13 REMARK 500 HIS A 141 -75.19 2.37 REMARK 500 LYS A 142 160.85 -4.52 REMARK 500 SER A 151 58.13 -96.97 REMARK 500 LYS A 172 24.90 -141.71 REMARK 500 ILE A 293 -53.58 -129.07 REMARK 500 SER A 398 47.21 -97.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 600 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 238 O REMARK 620 2 VAL A 241 O 85.4 REMARK 620 3 VAL A 244 O 135.8 70.4 REMARK 620 4 GLY A 246 O 78.1 145.8 101.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V4S RELATED DB: PDB REMARK 900 1V4S WAS OBTAINED WITH A DIFFERENT ISOFORM AT A LOWER PH IN A REMARK 900 DIFFERENT UNIT CELL REMARK 900 RELATED ID: 3F9M RELATED DB: PDB REMARK 900 HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE AND ACTIVATOR REMARK 900 RELATED ID: 3FGU RELATED DB: PDB REMARK 900 HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE AND AMP-PNP REMARK 900 RELATED ID: 3ID8 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF HUMAN PANCREATIC GLUCOKINASE CRYSTALLIZED WITH REMARK 900 ACTIVATOR, GLUCOSE AND AMP-PNP DBREF 3IDH A 12 465 UNP P35557 HXK4_HUMAN 12 465 SEQADV 3IDH MET A -4 UNP P35557 EXPRESSION TAG SEQADV 3IDH GLY A -3 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A -2 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A -1 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A 0 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A 1 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A 2 UNP P35557 EXPRESSION TAG SEQADV 3IDH HIS A 3 UNP P35557 EXPRESSION TAG SEQADV 3IDH GLU A 4 UNP P35557 EXPRESSION TAG SEQADV 3IDH ASN A 5 UNP P35557 EXPRESSION TAG SEQADV 3IDH LEU A 6 UNP P35557 EXPRESSION TAG SEQADV 3IDH TYR A 7 UNP P35557 EXPRESSION TAG SEQADV 3IDH PHE A 8 UNP P35557 EXPRESSION TAG SEQADV 3IDH GLN A 9 UNP P35557 EXPRESSION TAG SEQADV 3IDH GLY A 10 UNP P35557 EXPRESSION TAG SEQADV 3IDH MET A 11 UNP P35557 EXPRESSION TAG SEQRES 1 A 470 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 470 GLN GLY MET LYS LYS GLU LYS VAL GLU GLN ILE LEU ALA SEQRES 3 A 470 GLU PHE GLN LEU GLN GLU GLU ASP LEU LYS LYS VAL MET SEQRES 4 A 470 ARG ARG MET GLN LYS GLU MET ASP ARG GLY LEU ARG LEU SEQRES 5 A 470 GLU THR HIS GLU GLU ALA SER VAL LYS MET LEU PRO THR SEQRES 6 A 470 TYR VAL ARG SER THR PRO GLU GLY SER GLU VAL GLY ASP SEQRES 7 A 470 PHE LEU SER LEU ASP LEU GLY GLY THR ASN PHE ARG VAL SEQRES 8 A 470 MET LEU VAL LYS VAL GLY GLU GLY GLU GLU GLY GLN TRP SEQRES 9 A 470 SER VAL LYS THR LYS HIS GLN MET TYR SER ILE PRO GLU SEQRES 10 A 470 ASP ALA MET THR GLY THR ALA GLU MET LEU PHE ASP TYR SEQRES 11 A 470 ILE SER GLU CYS ILE SER ASP PHE LEU ASP LYS HIS GLN SEQRES 12 A 470 MET LYS HIS LYS LYS LEU PRO LEU GLY PHE THR PHE SER SEQRES 13 A 470 PHE PRO VAL ARG HIS GLU ASP ILE ASP LYS GLY ILE LEU SEQRES 14 A 470 LEU ASN TRP THR LYS GLY PHE LYS ALA SER GLY ALA GLU SEQRES 15 A 470 GLY ASN ASN VAL VAL GLY LEU LEU ARG ASP ALA ILE LYS SEQRES 16 A 470 ARG ARG GLY ASP PHE GLU MET ASP VAL VAL ALA MET VAL SEQRES 17 A 470 ASN ASP THR VAL ALA THR MET ILE SER CYS TYR TYR GLU SEQRES 18 A 470 ASP HIS GLN CYS GLU VAL GLY MET ILE VAL GLY THR GLY SEQRES 19 A 470 CYS ASN ALA CYS TYR MET GLU GLU MET GLN ASN VAL GLU SEQRES 20 A 470 LEU VAL GLU GLY ASP GLU GLY ARG MET CYS VAL ASN THR SEQRES 21 A 470 GLU TRP GLY ALA PHE GLY ASP SER GLY GLU LEU ASP GLU SEQRES 22 A 470 PHE LEU LEU GLU TYR ASP ARG LEU VAL ASP GLU SER SER SEQRES 23 A 470 ALA ASN PRO GLY GLN GLN LEU TYR GLU LYS LEU ILE GLY SEQRES 24 A 470 GLY LYS TYR MET GLY GLU LEU VAL ARG LEU VAL LEU LEU SEQRES 25 A 470 ARG LEU VAL ASP GLU ASN LEU LEU PHE HIS GLY GLU ALA SEQRES 26 A 470 SER GLU GLN LEU ARG THR ARG GLY ALA PHE GLU THR ARG SEQRES 27 A 470 PHE VAL SER GLN VAL GLU SER ASP THR GLY ASP ARG LYS SEQRES 28 A 470 GLN ILE TYR ASN ILE LEU SER THR LEU GLY LEU ARG PRO SEQRES 29 A 470 SER THR THR ASP CYS ASP ILE VAL ARG ARG ALA CYS GLU SEQRES 30 A 470 SER VAL SER THR ARG ALA ALA HIS MET CYS SER ALA GLY SEQRES 31 A 470 LEU ALA GLY VAL ILE ASN ARG MET ARG GLU SER ARG SER SEQRES 32 A 470 GLU ASP VAL MET ARG ILE THR VAL GLY VAL ASP GLY SER SEQRES 33 A 470 VAL TYR LYS LEU HIS PRO SER PHE LYS GLU ARG PHE HIS SEQRES 34 A 470 ALA SER VAL ARG ARG LEU THR PRO SER CYS GLU ILE THR SEQRES 35 A 470 PHE ILE GLU SER GLU GLU GLY SER GLY ARG GLY ALA ALA SEQRES 36 A 470 LEU VAL SER ALA VAL ALA CYS LYS LYS ALA CYS MET LEU SEQRES 37 A 470 GLY GLN HET GLC A 500 12 HET K A 600 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM K POTASSIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 3 K K 1+ FORMUL 4 HOH *225(H2 O) HELIX 1 1 ASN A 5 ALA A 21 1 17 HELIX 2 2 GLU A 22 GLN A 24 5 3 HELIX 3 3 GLN A 26 ARG A 46 1 21 HELIX 4 4 PRO A 111 THR A 116 1 6 HELIX 5 5 THR A 118 HIS A 137 1 20 HELIX 6 6 ASN A 180 GLY A 193 1 14 HELIX 7 7 ASN A 204 TYR A 214 1 11 HELIX 8 8 GLN A 239 VAL A 241 5 3 HELIX 9 9 GLU A 256 PHE A 260 5 5 HELIX 10 10 LEU A 266 LEU A 270 5 5 HELIX 11 11 LEU A 271 SER A 280 1 10 HELIX 12 12 TYR A 289 ILE A 293 5 5 HELIX 13 13 GLY A 294 GLU A 312 1 19 HELIX 14 14 LEU A 315 GLU A 319 5 5 HELIX 15 15 GLU A 331 SER A 340 1 10 HELIX 16 16 ARG A 345 LEU A 355 1 11 HELIX 17 17 SER A 360 ARG A 397 1 38 HELIX 18 18 GLY A 410 HIS A 416 1 7 HELIX 19 19 SER A 418 THR A 431 1 14 HELIX 20 20 GLU A 443 CYS A 457 1 15 SHEET 1 A 6 LEU A 58 ARG A 63 0 SHEET 2 A 6 ARG A 250 ASN A 254 -1 O CYS A 252 N VAL A 62 SHEET 3 A 6 CYS A 230 GLU A 237 -1 N TYR A 234 O VAL A 253 SHEET 4 A 6 CYS A 220 VAL A 226 -1 N ILE A 225 O ASN A 231 SHEET 5 A 6 MET A 402 ASP A 409 1 O GLY A 407 N MET A 224 SHEET 6 A 6 CYS A 434 GLU A 440 1 O THR A 437 N VAL A 406 SHEET 1 B 5 GLN A 98 SER A 109 0 SHEET 2 B 5 ASN A 83 GLU A 93 -1 N VAL A 86 O GLN A 106 SHEET 3 B 5 GLY A 72 LEU A 79 -1 N PHE A 74 O VAL A 89 SHEET 4 B 5 PRO A 145 PHE A 150 1 O THR A 149 N LEU A 77 SHEET 5 B 5 ASP A 198 VAL A 203 1 O ASP A 198 N LEU A 146 SHEET 1 C 2 VAL A 154 ASP A 158 0 SHEET 2 C 2 LYS A 161 LEU A 164 -1 O ILE A 163 N ARG A 155 LINK O MET A 238 K K A 600 1555 1555 2.60 LINK O VAL A 241 K K A 600 1555 1555 2.63 LINK O VAL A 244 K K A 600 1555 1555 2.62 LINK O GLY A 246 K K A 600 1555 1555 2.52 CRYST1 65.510 81.970 86.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011501 0.00000