PDB Short entry for 3IJ1 HEADER GENE REGULATION 03-AUG-09 3IJ1 TITLE CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE H4K20 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EED RESIDUES 77-441; COMPND 5 SYNONYM: HEED, WD PROTEIN ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS COMPND 6 1, WAIT-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4K20 PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: HISTONE H4K20 PEPTIDE RESIDUES 15-25; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS WD40 DOMAIN, ALTERNATIVE INITIATION, ALTERNATIVE SPLICING, CHROMATIN KEYWDS 2 REGULATOR, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, WD REPEAT, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.JUSTIN,M.L.SHARPE,S.MARTIN,W.R.TAYLOR,V.DE MARCO,S.J.GAMBLIN REVDAT 4 03-APR-24 3IJ1 1 REMARK REVDAT 3 13-OCT-21 3IJ1 1 SEQADV LINK REVDAT 2 20-OCT-09 3IJ1 1 JRNL REVDAT 1 15-SEP-09 3IJ1 0 JRNL AUTH R.MARGUERON,N.JUSTIN,K.OHNO,M.L.SHARPE,J.SON,W.J.DRURY, JRNL AUTH 2 P.VOIGT,S.R.MARTIN,W.R.TAYLOR,V.DE MARCO,V.PIRROTTA, JRNL AUTH 3 D.REINBERG,S.J.GAMBLIN JRNL TITL ROLE OF THE POLYCOMB PROTEIN EED IN THE PROPAGATION OF JRNL TITL 2 REPRESSIVE HISTONE MARKS. JRNL REF NATURE V. 461 762 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19767730 JRNL DOI 10.1038/NATURE08398 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 25288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.1860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3056 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4140 ; 1.209 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.408 ;23.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;13.532 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1321 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2060 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 399 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 0.598 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2957 ; 0.991 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 1.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 2.328 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SEMET EED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.61450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.66050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.61450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.66050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT CONTAINS A MONOMERIC COMPLEX COMPOSED REMARK 300 FROM PROTEIN CHAIN A AND PEPTIDE CHAIN B, THEREFORE IT IS NOT A REMARK 300 DIMER AS THE TEXT IN REMARK 350 STATES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 77 REMARK 465 CYS A 78 REMARK 465 LYS A 79 REMARK 465 TYR A 80 REMARK 465 LEU A 440 REMARK 465 ARG A 441 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ASP B 24 REMARK 465 ASN B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 18.05 56.74 REMARK 500 SER A 118 -141.94 48.83 REMARK 500 ASN A 119 32.64 -98.95 REMARK 500 LEU A 135 -89.06 -103.96 REMARK 500 SER A 159 -8.07 78.77 REMARK 500 ASN A 191 -161.24 -163.54 REMARK 500 ASN A 191 -122.36 173.27 REMARK 500 HIS A 213 -1.15 83.30 REMARK 500 SER A 323 -161.64 -119.40 REMARK 500 CYS A 324 34.20 -95.22 REMARK 500 TYR A 365 58.30 73.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 190 ASN A 191 146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QXV RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF EZH2 RECOGNITION BY EED REMARK 900 RELATED ID: 3IIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H3K27 PEPTIDE REMARK 900 RELATED ID: 3IIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H1K26 PEPTIDE REMARK 900 RELATED ID: 3IJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH A TRIMETHYLATED HISTONE REMARK 900 H3K9 PEPTIDE REMARK 900 RELATED ID: 3IJC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EED IN COMPLEX WITH NDSB-195 DBREF 3IJ1 A 77 441 UNP O75530 EED_HUMAN 77 441 DBREF 3IJ1 B 15 25 PDB 3IJ1 3IJ1 15 25 SEQADV 3IJ1 THR A 370 UNP O75530 MET 370 ENGINEERED MUTATION SEQRES 1 A 365 LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SER LEU LYS SEQRES 2 A 365 GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL GLN PHE ASN SEQRES 3 A 365 TRP HIS SER LYS GLU GLY ASP PRO LEU VAL PHE ALA THR SEQRES 4 A 365 VAL GLY SER ASN ARG VAL THR LEU TYR GLU CYS HIS SER SEQRES 5 A 365 GLN GLY GLU ILE ARG LEU LEU GLN SER TYR VAL ASP ALA SEQRES 6 A 365 ASP ALA ASP GLU ASN PHE TYR THR CYS ALA TRP THR TYR SEQRES 7 A 365 ASP SER ASN THR SER HIS PRO LEU LEU ALA VAL ALA GLY SEQRES 8 A 365 SER ARG GLY ILE ILE ARG ILE ILE ASN PRO ILE THR MET SEQRES 9 A 365 GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY ASN ALA ILE SEQRES 10 A 365 ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO ASN LEU LEU SEQRES 11 A 365 LEU SER VAL SER LYS ASP HIS ALA LEU ARG LEU TRP ASN SEQRES 12 A 365 ILE GLN THR ASP THR LEU VAL ALA ILE PHE GLY GLY VAL SEQRES 13 A 365 GLU GLY HIS ARG ASP GLU VAL LEU SER ALA ASP TYR ASP SEQRES 14 A 365 LEU LEU GLY GLU LYS ILE MET SER CYS GLY MET ASP HIS SEQRES 15 A 365 SER LEU LYS LEU TRP ARG ILE ASN SER LYS ARG MET MET SEQRES 16 A 365 ASN ALA ILE LYS GLU SER TYR ASP TYR ASN PRO ASN LYS SEQRES 17 A 365 THR ASN ARG PRO PHE ILE SER GLN LYS ILE HIS PHE PRO SEQRES 18 A 365 ASP PHE SER THR ARG ASP ILE HIS ARG ASN TYR VAL ASP SEQRES 19 A 365 CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SER LYS SER SEQRES 20 A 365 CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO GLY LYS MET SEQRES 21 A 365 GLU ASP ASP ILE ASP LYS ILE LYS PRO SER GLU SER ASN SEQRES 22 A 365 VAL THR ILE LEU GLY ARG PHE ASP TYR SER GLN CYS ASP SEQRES 23 A 365 ILE TRP TYR MET ARG PHE SER THR ASP PHE TRP GLN LYS SEQRES 24 A 365 MET LEU ALA LEU GLY ASN GLN VAL GLY LYS LEU TYR VAL SEQRES 25 A 365 TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS ALA LYS CYS SEQRES 26 A 365 THR THR LEU THR HIS HIS LYS CYS GLY ALA ALA ILE ARG SEQRES 27 A 365 GLN THR SER PHE SER ARG ASP SER SER ILE LEU ILE ALA SEQRES 28 A 365 VAL CYS ASP ASP ALA SER ILE TRP ARG TRP ASP ARG LEU SEQRES 29 A 365 ARG SEQRES 1 B 11 ALA LYS ARG HIS ARG M3L VAL LEU ARG ASP ASN MODRES 3IJ1 M3L B 20 LYS N-TRIMETHYLLYSINE HET M3L B 20 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 HOH *400(H2 O) HELIX 1 1 SER A 267 TYR A 280 1 14 HELIX 2 2 ASN A 281 THR A 285 5 5 HELIX 3 3 ASP A 339 ILE A 343 5 5 HELIX 4 4 ASP A 395 ALA A 399 5 5 SHEET 1 A 4 LYS A 83 LYS A 89 0 SHEET 2 A 4 SER A 433 ASP A 438 -1 O ILE A 434 N LEU A 88 SHEET 3 A 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 A 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 B 4 LEU A 96 PHE A 101 0 SHEET 2 B 4 LEU A 111 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 B 4 ARG A 120 CYS A 126 -1 O CYS A 126 N LEU A 111 SHEET 4 B 4 ILE A 132 VAL A 139 -1 O ARG A 133 N GLU A 125 SHEET 1 C 4 PHE A 147 TYR A 154 0 SHEET 2 C 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 C 4 ILE A 171 ILE A 175 -1 O ILE A 175 N LEU A 163 SHEET 4 C 4 CYS A 182 VAL A 187 -1 O LYS A 184 N ILE A 174 SHEET 1 D 5 ILE A 193 PHE A 198 0 SHEET 2 D 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 D 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 D 5 THR A 224 PHE A 229 -1 O PHE A 229 N LEU A 215 SHEET 5 D 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 E 4 VAL A 239 TYR A 244 0 SHEET 2 E 4 LYS A 250 GLY A 255 -1 O CYS A 254 N SER A 241 SHEET 3 E 4 LEU A 260 ARG A 264 -1 O TRP A 263 N ILE A 251 SHEET 4 E 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 F 4 CYS A 311 LEU A 315 0 SHEET 2 F 4 LEU A 318 LYS A 322 -1 O LEU A 320 N ARG A 313 SHEET 3 F 4 ALA A 327 PRO A 333 -1 O VAL A 329 N SER A 321 SHEET 4 F 4 VAL A 350 ASP A 357 -1 O PHE A 356 N ILE A 328 SHEET 1 G 4 SER A 369 THR A 370 0 SHEET 2 G 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 G 4 LEU A 386 ASP A 390 -1 O TYR A 387 N LEU A 379 SHEET 4 G 4 LYS A 400 LEU A 404 -1 O LYS A 400 N ASP A 390 LINK C ARG B 19 N M3L B 20 1555 1555 1.33 LINK C M3L B 20 N VAL B 21 1555 1555 1.33 CRYST1 57.550 85.321 91.229 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010961 0.00000