PDB Short entry for 3IKL HEADER TRANSFERASE 06-AUG-09 3IKL TITLE CRYSTAL STRUCTURE OF POL GB DELTA-I4. CAVEAT 3IKL FOR BOTH CHAINS, RESIDUE GLY181 AND ARG182 HAVE APPARENT CAVEAT 2 3IKL COVALENT LINK IN THE COORDINATES. HOWEVER, THERE SHOULD BE CAVEAT 3 3IKL A LEU RESIDUE IN BETWEEN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE SUBUNIT GAMMA-2, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT, POLG-BETA, COMPND 5 MTPOLB, DNA POLYMERASE GAMMA ACCESSORY 55 KDA SUBUNIT, P55; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLG2, MTPOLB KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.LEE,W.D.KENNEDY,Y.W.YIN REVDAT 3 21-FEB-24 3IKL 1 REMARK REVDAT 2 26-JUL-17 3IKL 1 SOURCE REMARK REVDAT 1 25-AUG-10 3IKL 0 JRNL AUTH Y.S.LEE,W.D.KENNEDY,Y.W.YIN JRNL TITL STRUCTURAL INSIGHT INTO PROCESSIVE HUMAN MITOCHONDRIAL DNA JRNL TITL 2 SYNTHESIS AND DISEASE-RELATED POLYMERASE MUTATIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 312 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19837034 JRNL DOI 10.1016/J.CELL.2009.07.050 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 50156.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.6 REMARK 3 NUMBER OF REFLECTIONS : 14327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1006 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.067 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.74000 REMARK 3 B22 (A**2) : 16.74000 REMARK 3 B33 (A**2) : -33.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM SIGMAA (A) : 0.82 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.93 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 19.59 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3IKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16573 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.35200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.17600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.52800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: A HOMODIMERIC PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 CYS A 10 REMARK 465 HIS A 11 REMARK 465 LYS A 12 REMARK 465 VAL A 13 REMARK 465 CYS A 14 REMARK 465 ARG A 15 REMARK 465 CYS A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 PHE A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 LEU A 33 REMARK 465 THR A 34 REMARK 465 GLU A 35 REMARK 465 ARG A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 PRO A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLY A 42 REMARK 465 HIS A 43 REMARK 465 VAL A 44 REMARK 465 LYS A 45 REMARK 465 SER A 46 REMARK 465 HIS A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 LEU A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 ASN A 53 REMARK 465 GLY A 54 REMARK 465 GLU A 55 REMARK 465 HIS A 56 REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 PRO A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 GLY A 63 REMARK 465 GLU A 64 REMARK 465 GLY A 65 REMARK 465 LEU A 181A REMARK 465 PHE A 219 REMARK 465 ASP A 220 REMARK 465 THR A 221 REMARK 465 LYS A 222 REMARK 465 GLN A 223 REMARK 465 ILE A 224 REMARK 465 ARG A 225 REMARK 465 ASN A 226 REMARK 465 GLY A 227 REMARK 465 VAL A 228 REMARK 465 LEU A 356 REMARK 465 THR A 357 REMARK 465 GLU A 358 REMARK 465 ASN A 359 REMARK 465 SER A 360 REMARK 465 PHE A 361 REMARK 465 THR A 362 REMARK 465 ARG A 363 REMARK 465 LYS A 364 REMARK 465 LYS A 365 REMARK 465 ASN A 366 REMARK 465 LEU A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 CYS B 10 REMARK 465 HIS B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 CYS B 14 REMARK 465 ARG B 15 REMARK 465 CYS B 16 REMARK 465 LEU B 17 REMARK 465 LEU B 18 REMARK 465 SER B 19 REMARK 465 GLY B 20 REMARK 465 PHE B 21 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 GLN B 29 REMARK 465 PRO B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 32 REMARK 465 LEU B 33 REMARK 465 THR B 34 REMARK 465 GLU B 35 REMARK 465 ARG B 36 REMARK 465 SER B 37 REMARK 465 SER B 38 REMARK 465 PRO B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLY B 42 REMARK 465 HIS B 43 REMARK 465 VAL B 44 REMARK 465 LYS B 45 REMARK 465 SER B 46 REMARK 465 HIS B 47 REMARK 465 ALA B 48 REMARK 465 GLU B 49 REMARK 465 LEU B 50 REMARK 465 GLU B 51 REMARK 465 GLY B 52 REMARK 465 ASN B 53 REMARK 465 GLY B 54 REMARK 465 GLU B 55 REMARK 465 HIS B 56 REMARK 465 PRO B 57 REMARK 465 GLU B 58 REMARK 465 ALA B 59 REMARK 465 PRO B 60 REMARK 465 GLY B 61 REMARK 465 SER B 62 REMARK 465 GLY B 63 REMARK 465 GLU B 64 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 LEU B 181A REMARK 465 PHE B 219 REMARK 465 ASP B 220 REMARK 465 THR B 221 REMARK 465 LYS B 222 REMARK 465 GLN B 223 REMARK 465 ILE B 224 REMARK 465 ARG B 225 REMARK 465 ASN B 226 REMARK 465 GLY B 227 REMARK 465 VAL B 228 REMARK 465 LEU B 356 REMARK 465 THR B 357 REMARK 465 GLU B 358 REMARK 465 ASN B 359 REMARK 465 SER B 360 REMARK 465 PHE B 361 REMARK 465 THR B 362 REMARK 465 ARG B 363 REMARK 465 LYS B 364 REMARK 465 LYS B 365 REMARK 465 ASN B 366 REMARK 465 LEU B 367 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 388 N GLY A 390 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 124 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO A 140 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO B 333 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO B 376 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 88 -37.66 -24.19 REMARK 500 ASP A 89 -81.65 -58.81 REMARK 500 SER A 90 -47.83 -22.42 REMARK 500 LEU A 91 -71.41 -66.66 REMARK 500 VAL A 120 -100.69 -55.67 REMARK 500 PHE A 121 -82.80 -33.19 REMARK 500 ARG A 122 96.14 -63.40 REMARK 500 GLN A 124 32.31 161.03 REMARK 500 LEU A 131 172.66 -44.08 REMARK 500 PRO A 140 82.29 -58.85 REMARK 500 ASP A 142 135.22 43.47 REMARK 500 SER A 143 71.40 -67.38 REMARK 500 ARG A 146 -29.07 59.08 REMARK 500 ARG A 182 135.37 -36.14 REMARK 500 GLU A 191 -36.58 -38.59 REMARK 500 TYR A 193 -39.72 -22.20 REMARK 500 CYS A 196 0.50 -67.80 REMARK 500 ASN A 201 21.94 45.29 REMARK 500 TYR A 206 139.98 177.33 REMARK 500 PRO A 245 -46.22 -29.77 REMARK 500 PHE A 254 -83.92 -61.98 REMARK 500 LEU A 256 -69.70 -28.57 REMARK 500 SER A 269 73.27 -178.30 REMARK 500 SER A 271 4.86 -57.61 REMARK 500 ASP A 280 84.21 49.88 REMARK 500 LYS A 285 111.21 72.41 REMARK 500 PRO A 294 -33.76 -29.81 REMARK 500 HIS A 309 -121.41 -52.64 REMARK 500 GLU A 310 -65.90 -1.90 REMARK 500 TYR A 315 76.42 -111.04 REMARK 500 LYS A 321 -7.05 -49.59 REMARK 500 LEU A 322 -122.06 -121.51 REMARK 500 HIS A 323 99.51 20.67 REMARK 500 ASP A 326 -87.09 -101.95 REMARK 500 ARG A 328 -17.46 114.19 REMARK 500 PRO A 333 163.51 -47.24 REMARK 500 LYS A 370 -98.17 -115.29 REMARK 500 VAL A 371 131.44 62.18 REMARK 500 ALA A 379 137.39 -29.40 REMARK 500 LYS A 382 -78.45 -72.24 REMARK 500 ASP A 386 -136.31 -140.49 REMARK 500 ARG A 389 64.64 -33.56 REMARK 500 PRO A 391 -101.02 -73.07 REMARK 500 THR A 392 -87.40 -159.74 REMARK 500 LEU A 393 -77.43 -28.13 REMARK 500 LEU A 395 -70.55 -53.44 REMARK 500 ARG A 396 46.67 -77.80 REMARK 500 GLN A 397 -68.51 -126.38 REMARK 500 TYR A 417 -9.07 -56.57 REMARK 500 THR A 420 -131.82 -68.62 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3IKL A 1 146 UNP Q9UHN1 DPOG2_HUMAN 1 146 DBREF 3IKL A 181A 485 UNP Q9UHN1 DPOG2_HUMAN 181 485 DBREF 3IKL B 1 146 UNP Q9UHN1 DPOG2_HUMAN 1 146 DBREF 3IKL B 181A 485 UNP Q9UHN1 DPOG2_HUMAN 181 485 SEQADV 3IKL GLY A 180 UNP Q9UHN1 LINKER SEQADV 3IKL GLY A 181 UNP Q9UHN1 LINKER SEQADV 3IKL HIS A 486 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 487 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 488 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 489 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 490 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS A 491 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL GLY B 180 UNP Q9UHN1 LINKER SEQADV 3IKL GLY B 181 UNP Q9UHN1 LINKER SEQADV 3IKL HIS B 486 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 487 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 488 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 489 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 490 UNP Q9UHN1 EXPRESSION TAG SEQADV 3IKL HIS B 491 UNP Q9UHN1 EXPRESSION TAG SEQRES 1 A 459 MET ARG SER ARG VAL ALA VAL ARG ALA CYS HIS LYS VAL SEQRES 2 A 459 CYS ARG CYS LEU LEU SER GLY PHE GLY GLY ARG VAL ASP SEQRES 3 A 459 ALA GLY GLN PRO GLU LEU LEU THR GLU ARG SER SER PRO SEQRES 4 A 459 LYS GLY GLY HIS VAL LYS SER HIS ALA GLU LEU GLU GLY SEQRES 5 A 459 ASN GLY GLU HIS PRO GLU ALA PRO GLY SER GLY GLU GLY SEQRES 6 A 459 SER GLU ALA LEU LEU GLU ILE CYS GLN ARG ARG HIS PHE SEQRES 7 A 459 LEU SER GLY SER LYS GLN GLN LEU SER ARG ASP SER LEU SEQRES 8 A 459 LEU SER GLY CYS HIS PRO GLY PHE GLY PRO LEU GLY VAL SEQRES 9 A 459 GLU LEU ARG LYS ASN LEU ALA ALA GLU TRP TRP THR SER SEQRES 10 A 459 VAL VAL VAL PHE ARG GLU GLN VAL PHE PRO VAL ASP ALA SEQRES 11 A 459 LEU HIS HIS LYS PRO GLY PRO LEU LEU PRO GLY ASP SER SEQRES 12 A 459 ALA PHE ARG GLY GLY LEU ARG GLU ASN LEU LEU HIS GLY SEQRES 13 A 459 ALA LEU GLU HIS TYR VAL ASN CYS LEU ASP LEU VAL ASN SEQRES 14 A 459 LYS ARG LEU PRO TYR GLY LEU ALA GLN ILE GLY VAL CYS SEQRES 15 A 459 PHE HIS PRO VAL PHE ASP THR LYS GLN ILE ARG ASN GLY SEQRES 16 A 459 VAL LYS SER ILE GLY GLU LYS THR GLU ALA SER LEU VAL SEQRES 17 A 459 TRP PHE THR PRO PRO ARG THR SER ASN GLN TRP LEU ASP SEQRES 18 A 459 PHE TRP LEU ARG HIS ARG LEU GLN TRP TRP ARG LYS PHE SEQRES 19 A 459 ALA MET SER PRO SER ASN PHE SER SER SER ASP CYS GLN SEQRES 20 A 459 ASP GLU GLU GLY ARG LYS GLY ASN LYS LEU TYR TYR ASN SEQRES 21 A 459 PHE PRO TRP GLY LYS GLU LEU ILE GLU THR LEU TRP ASN SEQRES 22 A 459 LEU GLY ASP HIS GLU LEU LEU HIS MET TYR PRO GLY ASN SEQRES 23 A 459 VAL SER LYS LEU HIS GLY ARG ASP GLY ARG LYS ASN VAL SEQRES 24 A 459 VAL PRO CYS VAL LEU SER VAL ASN GLY ASP LEU ASP ARG SEQRES 25 A 459 GLY MET LEU ALA TYR LEU TYR ASP SER PHE GLN LEU THR SEQRES 26 A 459 GLU ASN SER PHE THR ARG LYS LYS ASN LEU HIS ARG LYS SEQRES 27 A 459 VAL LEU LYS LEU HIS PRO CYS LEU ALA PRO ILE LYS VAL SEQRES 28 A 459 ALA LEU ASP VAL GLY ARG GLY PRO THR LEU GLU LEU ARG SEQRES 29 A 459 GLN VAL CYS GLN GLY LEU PHE ASN GLU LEU LEU GLU ASN SEQRES 30 A 459 GLY ILE SER VAL TRP PRO GLY TYR LEU GLU THR MET GLN SEQRES 31 A 459 SER SER LEU GLU GLN LEU TYR SER LYS TYR ASP GLU MET SEQRES 32 A 459 SER ILE LEU PHE THR VAL LEU VAL THR GLU THR THR LEU SEQRES 33 A 459 GLU ASN GLY LEU ILE HIS LEU ARG SER ARG ASP THR THR SEQRES 34 A 459 MET LYS GLU MET MET HIS ILE SER LYS LEU LYS ASP PHE SEQRES 35 A 459 LEU ILE LYS TYR ILE SER SER ALA LYS ASN VAL HIS HIS SEQRES 36 A 459 HIS HIS HIS HIS SEQRES 1 B 459 MET ARG SER ARG VAL ALA VAL ARG ALA CYS HIS LYS VAL SEQRES 2 B 459 CYS ARG CYS LEU LEU SER GLY PHE GLY GLY ARG VAL ASP SEQRES 3 B 459 ALA GLY GLN PRO GLU LEU LEU THR GLU ARG SER SER PRO SEQRES 4 B 459 LYS GLY GLY HIS VAL LYS SER HIS ALA GLU LEU GLU GLY SEQRES 5 B 459 ASN GLY GLU HIS PRO GLU ALA PRO GLY SER GLY GLU GLY SEQRES 6 B 459 SER GLU ALA LEU LEU GLU ILE CYS GLN ARG ARG HIS PHE SEQRES 7 B 459 LEU SER GLY SER LYS GLN GLN LEU SER ARG ASP SER LEU SEQRES 8 B 459 LEU SER GLY CYS HIS PRO GLY PHE GLY PRO LEU GLY VAL SEQRES 9 B 459 GLU LEU ARG LYS ASN LEU ALA ALA GLU TRP TRP THR SER SEQRES 10 B 459 VAL VAL VAL PHE ARG GLU GLN VAL PHE PRO VAL ASP ALA SEQRES 11 B 459 LEU HIS HIS LYS PRO GLY PRO LEU LEU PRO GLY ASP SER SEQRES 12 B 459 ALA PHE ARG GLY GLY LEU ARG GLU ASN LEU LEU HIS GLY SEQRES 13 B 459 ALA LEU GLU HIS TYR VAL ASN CYS LEU ASP LEU VAL ASN SEQRES 14 B 459 LYS ARG LEU PRO TYR GLY LEU ALA GLN ILE GLY VAL CYS SEQRES 15 B 459 PHE HIS PRO VAL PHE ASP THR LYS GLN ILE ARG ASN GLY SEQRES 16 B 459 VAL LYS SER ILE GLY GLU LYS THR GLU ALA SER LEU VAL SEQRES 17 B 459 TRP PHE THR PRO PRO ARG THR SER ASN GLN TRP LEU ASP SEQRES 18 B 459 PHE TRP LEU ARG HIS ARG LEU GLN TRP TRP ARG LYS PHE SEQRES 19 B 459 ALA MET SER PRO SER ASN PHE SER SER SER ASP CYS GLN SEQRES 20 B 459 ASP GLU GLU GLY ARG LYS GLY ASN LYS LEU TYR TYR ASN SEQRES 21 B 459 PHE PRO TRP GLY LYS GLU LEU ILE GLU THR LEU TRP ASN SEQRES 22 B 459 LEU GLY ASP HIS GLU LEU LEU HIS MET TYR PRO GLY ASN SEQRES 23 B 459 VAL SER LYS LEU HIS GLY ARG ASP GLY ARG LYS ASN VAL SEQRES 24 B 459 VAL PRO CYS VAL LEU SER VAL ASN GLY ASP LEU ASP ARG SEQRES 25 B 459 GLY MET LEU ALA TYR LEU TYR ASP SER PHE GLN LEU THR SEQRES 26 B 459 GLU ASN SER PHE THR ARG LYS LYS ASN LEU HIS ARG LYS SEQRES 27 B 459 VAL LEU LYS LEU HIS PRO CYS LEU ALA PRO ILE LYS VAL SEQRES 28 B 459 ALA LEU ASP VAL GLY ARG GLY PRO THR LEU GLU LEU ARG SEQRES 29 B 459 GLN VAL CYS GLN GLY LEU PHE ASN GLU LEU LEU GLU ASN SEQRES 30 B 459 GLY ILE SER VAL TRP PRO GLY TYR LEU GLU THR MET GLN SEQRES 31 B 459 SER SER LEU GLU GLN LEU TYR SER LYS TYR ASP GLU MET SEQRES 32 B 459 SER ILE LEU PHE THR VAL LEU VAL THR GLU THR THR LEU SEQRES 33 B 459 GLU ASN GLY LEU ILE HIS LEU ARG SER ARG ASP THR THR SEQRES 34 B 459 MET LYS GLU MET MET HIS ILE SER LYS LEU LYS ASP PHE SEQRES 35 B 459 LEU ILE LYS TYR ILE SER SER ALA LYS ASN VAL HIS HIS SEQRES 36 B 459 HIS HIS HIS HIS HELIX 1 1 ALA A 68 ARG A 76 1 9 HELIX 2 2 SER A 87 SER A 93 1 7 HELIX 3 3 GLY A 100 VAL A 119 1 20 HELIX 4 4 LEU A 185 TYR A 193 1 9 HELIX 5 5 LEU A 197 ASN A 201 5 5 HELIX 6 6 PRO A 244 ARG A 246 5 3 HELIX 7 7 THR A 247 ALA A 267 1 21 HELIX 8 8 SER A 269 SER A 271 5 3 HELIX 9 9 ASP A 308 TYR A 315 1 8 HELIX 10 10 LEU A 342 ASP A 352 1 11 HELIX 11 11 GLU A 394 ASN A 409 1 16 HELIX 12 12 PRO A 415 GLU A 419 5 5 HELIX 13 13 LEU A 425 ASP A 433 1 9 HELIX 14 14 GLU A 434 SER A 436 5 3 HELIX 15 15 SER A 469 VAL A 485 1 17 HELIX 16 16 GLU B 67 ARG B 76 1 10 HELIX 17 17 SER B 87 SER B 93 1 7 HELIX 18 18 GLY B 100 THR B 116 1 17 HELIX 19 19 LEU B 185 GLU B 191 1 7 HELIX 20 20 HIS B 192 TYR B 193 5 2 HELIX 21 21 VAL B 194 ASP B 198 5 5 HELIX 22 22 THR B 247 LYS B 265 1 19 HELIX 23 23 SER B 269 SER B 271 5 3 HELIX 24 24 ASP B 308 TYR B 315 1 8 HELIX 25 25 VAL B 319 HIS B 323 5 5 HELIX 26 26 LEU B 342 ASP B 352 1 11 HELIX 27 27 GLN B 397 GLY B 401 5 5 HELIX 28 28 LEU B 402 ASN B 409 1 8 HELIX 29 29 PRO B 415 GLU B 419 5 5 HELIX 30 30 LEU B 425 SER B 436 1 12 HELIX 31 31 THR B 444 GLU B 449 1 6 HELIX 32 32 HIS B 467 SER B 469 5 3 HELIX 33 33 LYS B 470 LYS B 483 1 14 SHEET 1 A 7 PHE A 126 PRO A 127 0 SHEET 2 A 7 TYR A 206 PHE A 215 1 O ALA A 209 N PHE A 126 SHEET 3 A 7 GLU A 233 THR A 243 -1 O LYS A 234 N CYS A 214 SHEET 4 A 7 CYS A 334 ASP A 341 -1 O GLY A 340 N ALA A 237 SHEET 5 A 7 LYS A 297 ASN A 305 -1 N THR A 302 O ASN A 339 SHEET 6 A 7 GLY A 286 ASN A 292 -1 N ASN A 287 O LEU A 303 SHEET 7 A 7 PHE A 273 CYS A 278 -1 N SER A 274 O TYR A 290 SHEET 1 B 5 VAL A 413 TRP A 414 0 SHEET 2 B 5 VAL A 383 VAL A 387 1 N VAL A 383 O TRP A 414 SHEET 3 B 5 PHE A 439 VAL A 443 1 O VAL A 441 N ALA A 384 SHEET 4 B 5 LEU A 452 SER A 457 -1 O HIS A 454 N LEU A 442 SHEET 5 B 5 MET A 466 HIS A 467 -1 O MET A 466 N ILE A 453 SHEET 1 C 7 VAL B 125 PRO B 127 0 SHEET 2 C 7 TYR B 206 PRO B 217 1 O GLY B 207 N PHE B 126 SHEET 3 C 7 ILE B 231 THR B 243 -1 O GLY B 232 N HIS B 216 SHEET 4 C 7 CYS B 334 ASP B 341 -1 O VAL B 338 N LEU B 239 SHEET 5 C 7 GLY B 296 ASN B 305 -1 N THR B 302 O ASN B 339 SHEET 6 C 7 GLY B 286 PHE B 293 -1 N ASN B 287 O LEU B 303 SHEET 7 C 7 PHE B 273 CYS B 278 -1 N SER B 274 O TYR B 290 SHEET 1 D 5 VAL B 413 TRP B 414 0 SHEET 2 D 5 VAL B 383 VAL B 387 1 N VAL B 383 O TRP B 414 SHEET 3 D 5 PHE B 439 VAL B 443 1 O PHE B 439 N ALA B 384 SHEET 4 D 5 HIS B 454 ARG B 456 -1 O HIS B 454 N LEU B 442 SHEET 5 D 5 LYS B 463 GLU B 464 -1 O GLU B 464 N LEU B 455 CISPEP 1 LEU A 204 PRO A 205 0 -0.11 CISPEP 2 LEU B 204 PRO B 205 0 -0.67 CRYST1 64.430 64.430 260.704 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003836 0.00000