PDB Short entry for 3IWR HEADER HYDROLASE 03-SEP-09 3IWR TITLE CRYSTAL STRUCTURE OF CLASS I CHITINASE FROM ORYZA SATIVA L. JAPONICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHITINASE 2, RESIDUES 33-340; COMPND 5 SYNONYM: ENDOCHITINASE; COMPND 6 EC: 3.2.1.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: CHT-2, OSJ_18467; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS CLASS I CHITINASE, ORYZA SATIVA L. JAPONICA, CHITIN-BINDING, KEYWDS 2 GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KEZUKA,T.WATANABE,T.NONAKA REVDAT 4 06-SEP-23 3IWR 1 REMARK SEQADV REVDAT 3 01-NOV-17 3IWR 1 REMARK REVDAT 2 30-JUN-10 3IWR 1 JRNL REVDAT 1 21-APR-10 3IWR 0 JRNL AUTH Y.KEZUKA,M.KOJIMA,R.MIZUNO,K.SUZUKI,T.WATANABE,T.NONAKA JRNL TITL STRUCTURE OF FULL-LENGTH CLASS I CHITINASE FROM RICE JRNL TITL 2 REVEALED BY X-RAY CRYSTALLOGRAPHY AND SMALL-ANGLE X-RAY JRNL TITL 3 SCATTERING. JRNL REF PROTEINS V. 78 2295 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20544965 JRNL DOI 10.1002/PROT.22742 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.MIZUNO,T.FUKAMIZO,S.SUGIYAMA,Y.NISHIZAWA,Y.KEZUKA, REMARK 1 AUTH 2 T.NONAKA,K.SUZUKI,T.WATANABE REMARK 1 TITL ROLE OF THE LOOP STRUCTURE OF THE CATALYTIC DOMAIN IN RICE REMARK 1 TITL 2 CLASS I CHITINASE REMARK 1 REF J.BIOCHEM. V. 143 487 2008 REMARK 1 REFN ISSN 0021-924X REMARK 1 REFERENCE 2 REMARK 1 AUTH R.MIZUNO,Y.ITOH,Y.NISHIZAWA,Y.KEZUKA,K.SUZUKI,T.NONAKA, REMARK 1 AUTH 2 T.WATANABE REMARK 1 TITL PURIFICATION AND CHARACTERIZATION OF A RICE CLASS I REMARK 1 TITL 2 CHITINASE, OSCHIA1B, PRODUCED IN ESCHERICHIA COLI REMARK 1 REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 72 893 2008 REMARK 1 REFN ISSN 0916-8451 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.KEZUKA,K.KITAZAKI,Y.ITOH,J.WATANABE,O.TAKAHA,T.WATANABE, REMARK 1 AUTH 2 Y.NISHIZAWA,T.NONAKA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF PLANT REMARK 1 TITL 2 CLASS I CHITINASE FROM RICE REMARK 1 REF PROTEIN PEPT.LETT. V. 11 401 2004 REMARK 1 REFN ISSN 0929-8665 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.615 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3941 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2726 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5389 ; 1.398 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6527 ; 0.940 ; 2.985 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 5.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;36.264 ;22.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;15.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.290 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4560 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 896 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 953 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2811 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1984 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1836 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 155 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.133 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3089 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1008 ; 0.128 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3894 ; 1.111 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 1.536 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1490 ; 2.217 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 101.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : 0.22100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11%(W/V) PEG 20000, 0.1M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.98067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.99033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.98550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.99517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.97583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 GLU A 33 REMARK 465 GLN A 34 REMARK 465 CYS A 35 REMARK 465 GLY A 36 REMARK 465 ALA A 37 REMARK 465 GLN A 38 REMARK 465 ALA A 39 REMARK 465 GLY A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ARG A 43 REMARK 465 CYS A 44 REMARK 465 PRO A 45 REMARK 465 ASN A 46 REMARK 465 CYS A 47 REMARK 465 LEU A 48 REMARK 465 CYS A 49 REMARK 465 CYS A 50 REMARK 465 SER A 51 REMARK 465 ARG A 52 REMARK 465 TRP A 53 REMARK 465 GLY A 54 REMARK 465 TRP A 55 REMARK 465 CYS A 56 REMARK 465 GLY A 57 REMARK 465 THR A 58 REMARK 465 THR A 59 REMARK 465 SER A 60 REMARK 465 ASP A 61 REMARK 465 PHE A 62 REMARK 465 CYS A 63 REMARK 465 GLY A 64 REMARK 465 ASP A 65 REMARK 465 GLY A 66 REMARK 465 CYS A 67 REMARK 465 GLN A 68 REMARK 465 SER A 69 REMARK 465 GLN A 70 REMARK 465 CYS A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 CYS A 74 REMARK 465 GLY A 75 REMARK 465 PRO A 76 REMARK 465 THR A 77 REMARK 465 PRO A 78 REMARK 465 THR A 79 REMARK 465 PRO A 80 REMARK 465 THR A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 SER A 84 REMARK 465 PRO A 85 REMARK 465 SER A 86 REMARK 465 SER A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 VAL A 335 REMARK 465 GLY A 336 REMARK 465 LEU A 337 REMARK 465 ALA A 338 REMARK 465 GLU A 339 REMARK 465 GLN A 340 REMARK 465 MET B 32 REMARK 465 GLU B 33 REMARK 465 GLN B 34 REMARK 465 CYS B 35 REMARK 465 GLY B 36 REMARK 465 ALA B 37 REMARK 465 GLN B 38 REMARK 465 ALA B 39 REMARK 465 GLY B 40 REMARK 465 GLY B 41 REMARK 465 ALA B 42 REMARK 465 ARG B 43 REMARK 465 CYS B 44 REMARK 465 PRO B 45 REMARK 465 ASN B 46 REMARK 465 CYS B 47 REMARK 465 LEU B 48 REMARK 465 CYS B 49 REMARK 465 CYS B 50 REMARK 465 SER B 51 REMARK 465 ARG B 52 REMARK 465 TRP B 53 REMARK 465 GLY B 54 REMARK 465 TRP B 55 REMARK 465 CYS B 56 REMARK 465 GLY B 57 REMARK 465 THR B 58 REMARK 465 THR B 59 REMARK 465 SER B 60 REMARK 465 ASP B 61 REMARK 465 PHE B 62 REMARK 465 CYS B 63 REMARK 465 GLY B 64 REMARK 465 ASP B 65 REMARK 465 GLY B 66 REMARK 465 CYS B 67 REMARK 465 GLN B 68 REMARK 465 SER B 69 REMARK 465 GLN B 70 REMARK 465 CYS B 71 REMARK 465 SER B 72 REMARK 465 GLY B 73 REMARK 465 CYS B 74 REMARK 465 GLY B 75 REMARK 465 PRO B 76 REMARK 465 THR B 77 REMARK 465 PRO B 78 REMARK 465 THR B 79 REMARK 465 PRO B 80 REMARK 465 THR B 81 REMARK 465 PRO B 82 REMARK 465 PRO B 83 REMARK 465 SER B 84 REMARK 465 SER B 331 REMARK 465 GLY B 332 REMARK 465 SER B 333 REMARK 465 SER B 334 REMARK 465 VAL B 335 REMARK 465 GLY B 336 REMARK 465 LEU B 337 REMARK 465 ALA B 338 REMARK 465 GLU B 339 REMARK 465 GLN B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 102 58.68 -107.43 REMARK 500 ASN A 136 -178.52 -68.04 REMARK 500 PHE A 208 134.88 85.88 REMARK 500 ALA A 272 2.50 -64.39 REMARK 500 ASN A 286 39.58 -159.81 REMARK 500 LEU B 102 63.70 -104.20 REMARK 500 PRO B 186 129.12 -34.49 REMARK 500 PHE B 208 140.68 74.50 REMARK 500 ASN B 286 33.03 -149.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 85 SER B 86 -149.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 341 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DKV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM DBREF 3IWR A 33 340 UNP Q7DNA1 Q7DNA1_ORYSJ 33 340 DBREF 3IWR B 33 340 UNP Q7DNA1 Q7DNA1_ORYSJ 33 340 SEQADV 3IWR MET A 32 UNP Q7DNA1 INITIATING METHIONINE SEQADV 3IWR MET B 32 UNP Q7DNA1 INITIATING METHIONINE SEQRES 1 A 309 MET GLU GLN CYS GLY ALA GLN ALA GLY GLY ALA ARG CYS SEQRES 2 A 309 PRO ASN CYS LEU CYS CYS SER ARG TRP GLY TRP CYS GLY SEQRES 3 A 309 THR THR SER ASP PHE CYS GLY ASP GLY CYS GLN SER GLN SEQRES 4 A 309 CYS SER GLY CYS GLY PRO THR PRO THR PRO THR PRO PRO SEQRES 5 A 309 SER PRO SER ASP GLY VAL GLY SER ILE VAL PRO ARG ASP SEQRES 6 A 309 LEU PHE GLU ARG LEU LEU LEU HIS ARG ASN ASP GLY ALA SEQRES 7 A 309 CYS PRO ALA ARG GLY PHE TYR THR TYR GLU ALA PHE LEU SEQRES 8 A 309 ALA ALA ALA ALA ALA PHE PRO ALA PHE GLY GLY THR GLY SEQRES 9 A 309 ASN THR GLU THR ARG LYS ARG GLU VAL ALA ALA PHE LEU SEQRES 10 A 309 GLY GLN THR SER HIS GLU THR THR GLY GLY TRP PRO THR SEQRES 11 A 309 ALA PRO ASP GLY PRO PHE SER TRP GLY TYR CYS PHE LYS SEQRES 12 A 309 GLN GLU GLN ASN PRO PRO SER ASP TYR CYS GLN PRO SER SEQRES 13 A 309 PRO GLU TRP PRO CYS ALA PRO GLY ARG LYS TYR TYR GLY SEQRES 14 A 309 ARG GLY PRO ILE GLN LEU SER PHE ASN PHE ASN TYR GLY SEQRES 15 A 309 PRO ALA GLY ARG ALA ILE GLY VAL ASP LEU LEU SER ASN SEQRES 16 A 309 PRO ASP LEU VAL ALA THR ASP ALA THR VAL SER PHE LYS SEQRES 17 A 309 THR ALA LEU TRP PHE TRP MET THR PRO GLN GLY ASN LYS SEQRES 18 A 309 PRO SER SER HIS ASP VAL ILE THR GLY ARG TRP ALA PRO SEQRES 19 A 309 SER PRO ALA ASP ALA ALA ALA GLY ARG ALA PRO GLY TYR SEQRES 20 A 309 GLY VAL ILE THR ASN ILE VAL ASN GLY GLY LEU GLU CYS SEQRES 21 A 309 GLY HIS GLY PRO ASP ASP ARG VAL ALA ASN ARG ILE GLY SEQRES 22 A 309 PHE TYR GLN ARG TYR CYS GLY ALA PHE GLY ILE GLY THR SEQRES 23 A 309 GLY GLY ASN LEU ASP CYS TYR ASN GLN ARG PRO PHE ASN SEQRES 24 A 309 SER GLY SER SER VAL GLY LEU ALA GLU GLN SEQRES 1 B 309 MET GLU GLN CYS GLY ALA GLN ALA GLY GLY ALA ARG CYS SEQRES 2 B 309 PRO ASN CYS LEU CYS CYS SER ARG TRP GLY TRP CYS GLY SEQRES 3 B 309 THR THR SER ASP PHE CYS GLY ASP GLY CYS GLN SER GLN SEQRES 4 B 309 CYS SER GLY CYS GLY PRO THR PRO THR PRO THR PRO PRO SEQRES 5 B 309 SER PRO SER ASP GLY VAL GLY SER ILE VAL PRO ARG ASP SEQRES 6 B 309 LEU PHE GLU ARG LEU LEU LEU HIS ARG ASN ASP GLY ALA SEQRES 7 B 309 CYS PRO ALA ARG GLY PHE TYR THR TYR GLU ALA PHE LEU SEQRES 8 B 309 ALA ALA ALA ALA ALA PHE PRO ALA PHE GLY GLY THR GLY SEQRES 9 B 309 ASN THR GLU THR ARG LYS ARG GLU VAL ALA ALA PHE LEU SEQRES 10 B 309 GLY GLN THR SER HIS GLU THR THR GLY GLY TRP PRO THR SEQRES 11 B 309 ALA PRO ASP GLY PRO PHE SER TRP GLY TYR CYS PHE LYS SEQRES 12 B 309 GLN GLU GLN ASN PRO PRO SER ASP TYR CYS GLN PRO SER SEQRES 13 B 309 PRO GLU TRP PRO CYS ALA PRO GLY ARG LYS TYR TYR GLY SEQRES 14 B 309 ARG GLY PRO ILE GLN LEU SER PHE ASN PHE ASN TYR GLY SEQRES 15 B 309 PRO ALA GLY ARG ALA ILE GLY VAL ASP LEU LEU SER ASN SEQRES 16 B 309 PRO ASP LEU VAL ALA THR ASP ALA THR VAL SER PHE LYS SEQRES 17 B 309 THR ALA LEU TRP PHE TRP MET THR PRO GLN GLY ASN LYS SEQRES 18 B 309 PRO SER SER HIS ASP VAL ILE THR GLY ARG TRP ALA PRO SEQRES 19 B 309 SER PRO ALA ASP ALA ALA ALA GLY ARG ALA PRO GLY TYR SEQRES 20 B 309 GLY VAL ILE THR ASN ILE VAL ASN GLY GLY LEU GLU CYS SEQRES 21 B 309 GLY HIS GLY PRO ASP ASP ARG VAL ALA ASN ARG ILE GLY SEQRES 22 B 309 PHE TYR GLN ARG TYR CYS GLY ALA PHE GLY ILE GLY THR SEQRES 23 B 309 GLY GLY ASN LEU ASP CYS TYR ASN GLN ARG PRO PHE ASN SEQRES 24 B 309 SER GLY SER SER VAL GLY LEU ALA GLU GLN HET MES A 1 12 HET MPD A 341 8 HET MES B 2 12 HET MPD B 341 8 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 7 HOH *121(H2 O) HELIX 1 1 GLY A 88 ILE A 92 5 5 HELIX 2 2 PRO A 94 LEU A 102 1 9 HELIX 3 3 THR A 117 ALA A 127 1 11 HELIX 4 4 ASN A 136 THR A 155 1 20 HELIX 5 5 GLY A 165 TRP A 169 5 5 HELIX 6 6 PHE A 208 GLY A 220 1 13 HELIX 7 7 ASP A 228 ASP A 233 1 6 HELIX 8 8 ASP A 233 THR A 247 1 15 HELIX 9 9 SER A 254 THR A 260 1 7 HELIX 10 10 SER A 266 ALA A 272 1 7 HELIX 11 11 GLY A 277 CYS A 291 1 15 HELIX 12 12 ASP A 296 GLY A 314 1 19 HELIX 13 13 GLY B 88 VAL B 93 1 6 HELIX 14 14 PRO B 94 LEU B 102 1 9 HELIX 15 15 THR B 117 ALA B 127 1 11 HELIX 16 16 ASN B 136 THR B 155 1 20 HELIX 17 17 GLY B 165 TRP B 169 5 5 HELIX 18 18 PHE B 208 GLY B 220 1 13 HELIX 19 19 ASP B 228 ASP B 233 1 6 HELIX 20 20 ASP B 233 THR B 247 1 15 HELIX 21 21 SER B 254 THR B 260 1 7 HELIX 22 22 SER B 266 ALA B 271 1 6 HELIX 23 23 GLY B 277 CYS B 291 1 15 HELIX 24 24 ASP B 296 GLY B 314 1 19 SSBOND 1 CYS A 110 CYS A 172 1555 1555 2.06 SSBOND 2 CYS A 184 CYS A 192 1555 1555 2.05 SSBOND 3 CYS A 291 CYS A 323 1555 1555 2.03 SSBOND 4 CYS B 110 CYS B 172 1555 1555 2.11 SSBOND 5 CYS B 184 CYS B 192 1555 1555 2.06 SSBOND 6 CYS B 291 CYS B 323 1555 1555 2.03 SITE 1 AC1 7 GLU A 154 ILE A 204 GLN A 205 LEU A 206 SITE 2 AC1 7 SER A 207 ASN A 211 VAL A 285 SITE 1 AC2 3 ARG A 142 ILE A 259 PRO A 276 SITE 1 AC3 7 GLU B 154 ILE B 204 GLN B 205 LEU B 206 SITE 2 AC3 7 SER B 207 ASN B 211 VAL B 285 SITE 1 AC4 4 HOH B 9 THR B 139 ARG B 142 ILE B 259 CRYST1 117.082 117.082 77.971 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008541 0.004931 0.000000 0.00000 SCALE2 0.000000 0.009862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012825 0.00000