PDB Short entry for 3IYS HEADER VIRUS 19-APR-10 3IYS TITLE HOMOLOGY MODEL OF AVIAN POLYOMAVIRUS ASYMMETRIC UNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN VP1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: MAJOR STRUCTURAL PROTEIN VP1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BUDGERIGAR FLEDGLING DISEASE POLYOMAVIRUS; SOURCE 3 ORGANISM_COMMON: BFPYV; SOURCE 4 ORGANISM_TAXID: 10625 KEYWDS AVIAN, POLYOMAVIRUS, APV, ICOSAHEDRAL VIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D, E, F AUTHOR P.S.SHEN,D.ENDERLEIN,C.D.S.NELSON,W.S.CARTER,M.KAWANO,L.XING, AUTHOR 2 R.D.SWENSON,N.H.OLSON,T.S.BAKER,R.H.CHENG,W.J.ATWOOD,R.JOHNE, AUTHOR 3 D.M.BELNAP REVDAT 3 18-JUL-18 3IYS 1 REMARK REVDAT 2 09-MAR-11 3IYS 1 JRNL REVDAT 1 26-JAN-11 3IYS 0 JRNL AUTH P.S.SHEN,D.ENDERLEIN,C.D.NELSON,W.S.CARTER,M.KAWANO,L.XING, JRNL AUTH 2 R.D.SWENSON,N.H.OLSON,T.S.BAKER,R.H.CHENG,W.J.ATWOOD, JRNL AUTH 3 R.JOHNE,D.M.BELNAP JRNL TITL THE STRUCTURE OF AVIAN POLYOMAVIRUS REVEALS VARIABLY SIZED JRNL TITL 2 CAPSIDS, NON-CONSERVED INTER-CAPSOMERE INTERACTIONS, AND A JRNL TITL 3 POSSIBLE LOCATION OF THE MINOR CAPSID PROTEIN VP4. JRNL REF VIROLOGY V. 411 142 2011 JRNL REFN ISSN 0042-6822 JRNL PMID 21239031 JRNL DOI 10.1016/J.VIROL.2010.12.005 REMARK 2 REMARK 2 RESOLUTION. 11.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, PFT3DR REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1SIE REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID BODY REFINEMENT PROTOCOL--RIGID REMARK 3 BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.630 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.30 REMARK 3 NUMBER OF PARTICLES : 5338 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: AGAINST SIMIAN VIRUS REMARK 3 40 ATOMIC COORDINATES REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3IYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000160034. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : AVIAN POLYOMAVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : AVIAN POLYOMAVIRUS IN HOLEY REMARK 245 CARBON GRID REMARK 245 SAMPLE VITRIFICATION DETAILS : APV REMARK 245 SAMPLE BUFFER : GP BUFFER WITH 250 MM L REMARK 245 -ARGININE REMARK 245 PH : 10.70 REMARK 245 SAMPLE DETAILS : CRYO-EM SINGLE PARTICLE REMARK 245 RECONSTRUCTION REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 23-APR-07 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 90.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 39000 REMARK 245 CALIBRATED MAGNIFICATION : 39000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 LYS C 4 REMARK 465 GLY C 5 REMARK 465 LYS C 6 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 LYS D 4 REMARK 465 GLY D 5 REMARK 465 LYS D 6 REMARK 465 MET D 328 REMARK 465 GLU D 329 REMARK 465 GLY D 330 REMARK 465 LEU D 331 REMARK 465 ALA D 332 REMARK 465 PRO D 333 REMARK 465 GLU D 334 REMARK 465 ILE D 335 REMARK 465 ASP D 336 REMARK 465 MET D 337 REMARK 465 PRO D 338 REMARK 465 PRO D 339 REMARK 465 LYS D 340 REMARK 465 ALA D 341 REMARK 465 PRO D 342 REMARK 465 ARG D 343 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 GLN E 3 REMARK 465 LYS E 4 REMARK 465 GLY E 5 REMARK 465 LYS E 6 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLN F 3 REMARK 465 LYS F 4 REMARK 465 GLY F 5 REMARK 465 LYS F 6 REMARK 465 GLY F 7 REMARK 465 ARG F 343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5180 RELATED DB: EMDB REMARK 900 RELATED ID: 1SIE RELATED DB: PDB REMARK 900 MURINE POLYOMAVIRUS DBREF 3IYS A 1 343 UNP P13891 VP1_BFPYV 1 343 DBREF 3IYS B 1 343 UNP P13891 VP1_BFPYV 1 343 DBREF 3IYS C 1 343 UNP P13891 VP1_BFPYV 1 343 DBREF 3IYS D 1 343 UNP P13891 VP1_BFPYV 1 343 DBREF 3IYS E 1 343 UNP P13891 VP1_BFPYV 1 343 DBREF 3IYS F 1 343 UNP P13891 VP1_BFPYV 1 343 SEQRES 1 A 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 A 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 A 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 A 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 A 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 A 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 A 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 A 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 A 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 A 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 A 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 A 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 A 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 A 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 A 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 A 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 A 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 A 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 A 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 A 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 A 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 A 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 A 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 A 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 A 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 A 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 A 343 PRO LYS ALA PRO ARG SEQRES 1 B 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 B 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 B 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 B 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 B 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 B 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 B 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 B 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 B 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 B 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 B 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 B 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 B 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 B 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 B 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 B 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 B 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 B 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 B 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 B 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 B 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 B 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 B 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 B 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 B 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 B 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 B 343 PRO LYS ALA PRO ARG SEQRES 1 C 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 C 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 C 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 C 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 C 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 C 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 C 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 C 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 C 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 C 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 C 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 C 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 C 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 C 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 C 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 C 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 C 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 C 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 C 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 C 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 C 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 C 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 C 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 C 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 C 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 C 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 C 343 PRO LYS ALA PRO ARG SEQRES 1 D 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 D 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 D 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 D 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 D 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 D 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 D 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 D 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 D 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 D 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 D 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 D 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 D 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 D 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 D 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 D 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 D 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 D 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 D 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 D 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 D 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 D 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 D 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 D 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 D 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 D 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 D 343 PRO LYS ALA PRO ARG SEQRES 1 E 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 E 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 E 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 E 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 E 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 E 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 E 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 E 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 E 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 E 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 E 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 E 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 E 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 E 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 E 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 E 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 E 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 E 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 E 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 E 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 E 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 E 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 E 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 E 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 E 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 E 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 E 343 PRO LYS ALA PRO ARG SEQRES 1 F 343 MET SER GLN LYS GLY LYS GLY SER CYS PRO ARG PRO GLN SEQRES 2 F 343 GLN VAL PRO ARG LEU LEU VAL LYS GLY GLY ILE GLU VAL SEQRES 3 F 343 LEU ASP VAL LYS SER GLY PRO ASP SER ILE THR THR ILE SEQRES 4 F 343 GLU ALA TYR LEU GLN PRO ARG PRO GLY GLN LYS ASN GLY SEQRES 5 F 343 TYR SER THR VAL ILE THR VAL GLN ALA GLU GLY TYR GLN SEQRES 6 F 343 ASP ALA PRO HIS SER THR GLU VAL PRO CYS TYR SER CYS SEQRES 7 F 343 ALA ARG ILE PRO LEU PRO THR ILE ASN ASP ASP ILE THR SEQRES 8 F 343 CYS PRO THR LEU LEU MET TRP GLU ALA VAL SER VAL LYS SEQRES 9 F 343 THR GLU VAL VAL GLY VAL SER SER ILE LEU ASN MET HIS SEQRES 10 F 343 SER GLY ALA PHE ARG ALA PHE ASN GLY TYR GLY GLY GLY SEQRES 11 F 343 PHE THR ILE CYS GLY PRO ARG ILE HIS PHE PHE SER VAL SEQRES 12 F 343 GLY GLY GLU PRO LEU ASP LEU GLN ALA CYS MET GLN ASN SEQRES 13 F 343 SER LYS THR VAL TYR PRO ALA PRO LEU ILE GLY PRO GLY SEQRES 14 F 343 GLU GLY GLU ARG ARG GLU THR ALA GLN VAL LEU ASP THR SEQRES 15 F 343 GLY TYR LYS ALA ARG LEU ASP LYS ASP GLY LEU TYR PRO SEQRES 16 F 343 ILE GLU CYS TRP CYS PRO ASP PRO ALA LYS ASN GLU ASN SEQRES 17 F 343 THR ARG TYR TYR GLY ASN LEU THR GLY GLY PRO GLU THR SEQRES 18 F 343 PRO PRO VAL LEU ALA PHE THR ASN THR THR THR THR ILE SEQRES 19 F 343 LEU LEU ASP GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY SEQRES 20 F 343 ASP GLY LEU PHE LEU SER ALA ALA ASP VAL ALA GLY THR SEQRES 21 F 343 TYR VAL ASP GLN ARG GLY ARG GLN TYR TRP ARG GLY LEU SEQRES 22 F 343 PRO ARG TYR PHE SER ILE GLN LEU ARG LYS ARG ASN VAL SEQRES 23 F 343 ARG ASN PRO TYR PRO VAL SER GLY LEU LEU ASN SER LEU SEQRES 24 F 343 PHE ASN ASP LEU MET PRO ARG MET THR GLY GLN SER MET SEQRES 25 F 343 GLN GLY SER ASP ALA GLN VAL GLU GLU VAL ARG VAL TYR SEQRES 26 F 343 GLU GLY MET GLU GLY LEU ALA PRO GLU ILE ASP MET PRO SEQRES 27 F 343 PRO LYS ALA PRO ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000