PDB Short entry for 3J0D HEADER TRANSLATION 29-JUN-11 3J0D TITLE MODELS FOR THE T. THERMOPHILUS RIBOSOME RECYCLING FACTOR BOUND TO THE TITLE 2 E. COLI POST-TERMINATION COMPLEX CAVEAT 3J0D RESIDUE J ILE 103 CHIRAL CENTER CB IS PLANAR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL 23S RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICES 43 AND 44; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBOSOMAL 23S RNA; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: HELIX 69; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RIBOSOMAL 23S RNA; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: HELIX 71; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: RIBOSOMAL 23S RNA; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: HELIX 80; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: RIBOSOMAL 23S RNA; COMPND 19 CHAIN: E; COMPND 20 FRAGMENT: HELIX 93; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: RIBOSOMAL 23S RNA; COMPND 23 CHAIN: F; COMPND 24 FRAGMENT: HELIX 95; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 27 CHAIN: G; COMPND 28 MOL_ID: 8; COMPND 29 MOLECULE: RIBOSOMAL 16S RNA; COMPND 30 CHAIN: H; COMPND 31 FRAGMENT: HELIX 44 STRAND 1; COMPND 32 MOL_ID: 9; COMPND 33 MOLECULE: RIBOSOMAL 16S RNA; COMPND 34 CHAIN: h; COMPND 35 FRAGMENT: HELIX 44 STRAND 2; COMPND 36 MOL_ID: 10; COMPND 37 MOLECULE: 30S RIBOSOMAL PROTEIN S12; COMPND 38 CHAIN: I; COMPND 39 MOL_ID: 11; COMPND 40 MOLECULE: RIBOSOME-RECYCLING FACTOR; COMPND 41 CHAIN: J; COMPND 42 SYNONYM: RRF, RIBOSOME-RELEASING FACTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562; SOURCE 16 MOL_ID: 6; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562; SOURCE 19 MOL_ID: 7; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 21 ORGANISM_TAXID: 562; SOURCE 22 MOL_ID: 8; SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 24 ORGANISM_TAXID: 562; SOURCE 25 MOL_ID: 9; SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 27 ORGANISM_TAXID: 562; SOURCE 28 MOL_ID: 10; SOURCE 29 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 30 ORGANISM_TAXID: 562; SOURCE 31 MOL_ID: 11; SOURCE 32 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 33 ORGANISM_TAXID: 274 KEYWDS RIBOSOME, RIBOSOME RECYCLING FACTOR, TRANSLATION EXPDTA ELECTRON MICROSCOPY AUTHOR T.YOKOYAMA,T.R.SHAIKH,N.IWAKURA,H.KAJI,A.KAJI,R.K.AGRAWAL REVDAT 4 18-JUL-18 3J0D 1 REMARK REVDAT 3 23-JUL-14 3J0D 1 REMARK REVDAT 2 13-NOV-13 3J0D 1 DBREF REVDAT 1 25-APR-12 3J0D 0 JRNL AUTH T.YOKOYAMA,T.R.SHAIKH,N.IWAKURA,H.KAJI,A.KAJI,R.K.AGRAWAL JRNL TITL STRUCTURAL INSIGHTS INTO INITIAL AND INTERMEDIATE STEPS OF JRNL TITL 2 THE RIBOSOME-RECYCLING PROCESS. JRNL REF EMBO J. V. 31 1836 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22388519 JRNL DOI 10.1038/EMBOJ.2012.22 REMARK 2 REMARK 2 RESOLUTION. 11.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : MDFF, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2AVY REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE FITTING (MDFF) REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.780 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.10 REMARK 3 NUMBER OF PARTICLES : 153927 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3J0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000160091. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : E. COLI POST TERMINATION REMARK 245 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.08 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLEY CARBON FILM G REMARK 245 SAMPLE VITRIFICATION DETAILS : VITROBOT REMARK 245 SAMPLE BUFFER : BUFFER R REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : POTC-TTRRF REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 23-DEC-10 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 50310 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FULL BIOLOGICAL ASSEMBLY IS A COMPLEX OF MRNA, TRNA, REMARK 300 RRF, AND RIBOSOME. REMARK 350 REFERS ONLY TO INDIVIDUAL CHAINS THAT REMARK 300 WERE MODELED AND DOES NOT REPRESENT THE FULL BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: UNDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, h, I, REMARK 350 AND CHAINS: J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B1907 OP1 REMARK 470 U B1926 O3' REMARK 470 C E2594 O2' REMARK 470 ALA I 1 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 C H 1412 OE1 GLU I 61 0.97 REMARK 500 OP1 A h 1492 O THR I 40 1.09 REMARK 500 OP1 A A 1067 NE2 GLN J 54 1.33 REMARK 500 O3' U h 1490 CB PRO I 90 1.36 REMARK 500 C5' A h 1492 OG1 THR I 40 1.40 REMARK 500 C5' G h 1491 CG PRO I 90 1.53 REMARK 500 N3 A F 2660 NE2 GLN J 69 1.57 REMARK 500 C4' A h 1492 OG1 THR I 40 1.63 REMARK 500 CE1 HIS I 76 NH2 ARG J 110 1.64 REMARK 500 OP1 C H 1412 CD GLU I 61 1.81 REMARK 500 OP1 G h 1491 NZ LYS I 42 1.84 REMARK 500 C4' G h 1491 CG PRO I 90 1.86 REMARK 500 C5' G h 1491 CD PRO I 90 1.90 REMARK 500 N1 A F 2660 OE1 GLN J 69 1.91 REMARK 500 C4 A F 2660 NE2 GLN J 69 1.93 REMARK 500 N3 A F 2660 CD GLN J 69 1.95 REMARK 500 OP1 G h 1491 CE LYS I 42 1.96 REMARK 500 C2 A F 2660 CD GLN J 69 1.98 REMARK 500 C2 A F 2660 OE1 GLN J 69 1.99 REMARK 500 P A h 1492 O THR I 40 2.00 REMARK 500 NE2 HIS I 76 NH2 ARG J 110 2.01 REMARK 500 OP1 A h 1492 C THR I 40 2.04 REMARK 500 O2' U h 1490 C PRO I 90 2.07 REMARK 500 O4' G h 1491 CG PRO I 90 2.07 REMARK 500 O5' G h 1491 CG PRO I 90 2.09 REMARK 500 O2' G C 1959 O4' A H 1418 2.12 REMARK 500 O2' U h 1490 N GLY I 91 2.13 REMARK 500 C6 A F 2660 OE1 GLN J 69 2.15 REMARK 500 N3 U A 1060 N7 A A 1088 2.17 REMARK 500 O3' U h 1490 CG PRO I 90 2.17 REMARK 500 P G h 1491 CB PRO I 90 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U A1060 C2 U A1060 N3 0.058 REMARK 500 A A1086 C5 A A1086 C6 -0.159 REMARK 500 A A1086 C5 A A1086 N7 -0.044 REMARK 500 A A1088 C6 A A1088 N1 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A1060 C5 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 A A1086 C4 - C5 - C6 ANGL. DEV. = 3.5 DEGREES REMARK 500 A A1086 C6 - C5 - N7 ANGL. DEV. = -4.8 DEGREES REMARK 500 A A1088 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 A A1088 C5 - C6 - N6 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR G 7 146.63 179.85 REMARK 500 ALA G 14 -75.11 -56.78 REMARK 500 MET G 16 140.02 179.11 REMARK 500 ASN G 18 -13.21 94.61 REMARK 500 VAL G 23 -116.86 -113.35 REMARK 500 GLU G 49 131.57 172.81 REMARK 500 LYS G 71 -167.95 -101.35 REMARK 500 ASN G 93 -33.23 70.16 REMARK 500 ARG I 8 -74.18 -74.03 REMARK 500 PRO I 10 -152.30 -55.10 REMARK 500 ARG I 13 -132.66 -78.38 REMARK 500 LYS I 14 99.10 -179.82 REMARK 500 VAL I 15 97.08 -56.52 REMARK 500 ASN I 19 84.72 -58.12 REMARK 500 VAL I 20 112.86 -175.46 REMARK 500 ALA I 22 46.85 -77.32 REMARK 500 LEU I 23 -108.05 -59.17 REMARK 500 GLU I 24 12.65 58.51 REMARK 500 VAL I 32 -25.61 -142.32 REMARK 500 CYS I 33 107.10 74.49 REMARK 500 THR I 38 42.46 -153.13 REMARK 500 PRO I 41 -171.06 -69.81 REMARK 500 LYS I 42 -158.63 -71.29 REMARK 500 ALA I 47 130.92 68.32 REMARK 500 CYS I 52 133.72 -176.39 REMARK 500 LEU I 56 148.37 -37.09 REMARK 500 PHE I 60 99.47 -44.13 REMARK 500 VAL I 62 143.13 178.89 REMARK 500 ILE I 66 58.46 -117.91 REMARK 500 ASN I 72 36.90 -175.26 REMARK 500 HIS I 76 -13.74 -149.68 REMARK 500 ARG I 82 -59.64 -122.56 REMARK 500 ARG I 85 -176.71 -62.06 REMARK 500 LYS I 87 -74.33 -67.93 REMARK 500 ASP I 88 -32.15 -38.03 REMARK 500 LEU I 101 -144.20 54.31 REMARK 500 SER I 104 -132.98 -118.63 REMARK 500 TYR I 116 -174.35 67.17 REMARK 500 ARG I 120 101.06 50.53 REMARK 500 PRO I 121 -171.34 -57.81 REMARK 500 LYS I 122 8.74 -59.70 REMARK 500 ARG J 32 -5.17 -162.14 REMARK 500 HIS J 49 77.22 -108.61 REMARK 500 PRO J 63 47.63 -101.88 REMARK 500 ALA J 82 -31.29 -132.07 REMARK 500 ARG J 84 -119.63 -71.58 REMARK 500 SER J 86 -66.25 -160.15 REMARK 500 ASP J 87 -8.66 -166.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U A1060 0.15 SIDE CHAIN REMARK 500 A A1086 0.12 SIDE CHAIN REMARK 500 A A1088 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-1915 RELATED DB: EMDB REMARK 900 E.COLI 70S POTC WITH BOUND T.THERMOPHILUS RIBOSOME RECYCLING FACTOR REMARK 900 RELATED ID: EMD-1916 RELATED DB: EMDB REMARK 900 T.THERMOPHILUS RIBOSOME RECYCLING FACTOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 RIBOSOMAL RNA IS ONLY PARTIALLY MODELED IN THIS ENTRY: CHAINS A-F REMARK 999 ARE PARTS OF THE 23S RIBOSOMAL RNA AND CHAINS H AND H ARE PARTS OF REMARK 999 THE 16S RIBOSOMAL RNA. DBREF1 3J0D A 1055 1104 GB U00096 DBREF2 3J0D A U00096.2 226813 226862 DBREF1 3J0D B 1905 1926 GB U00096 DBREF2 3J0D B U00096.2 227663 227684 DBREF1 3J0D C 1945 1961 GB U00096 DBREF2 3J0D C U00096.2 227703 227719 DBREF1 3J0D D 2246 2258 GB U00096 DBREF2 3J0D D U00096.2 228004 228016 DBREF1 3J0D E 2588 2606 GB U00096 DBREF2 3J0D E U00096.2 228346 228364 DBREF1 3J0D F 2651 2669 GB U00096 DBREF2 3J0D F U00096.2 228409 228427 DBREF 3J0D G 1 141 UNP P0A7J7 RL11_ECOLI 2 142 DBREF1 3J0D H 1404 1421 GB U00096 DBREF2 3J0D H U00096.2 225174 225191 DBREF1 3J0D h 1479 1497 GB U00096 DBREF2 3J0D h U00096.2 225249 225267 DBREF 3J0D I 1 123 UNP P0A7S3 RS12_ECOLI 2 124 DBREF 3J0D J 1 185 UNP Q9WX76 RRF_THET8 1 185 SEQRES 1 A 50 G G A U G U U G G C U U A SEQRES 2 A 50 G A A G C A G C C A U C A SEQRES 3 A 50 U U U A A A G A A A G C G SEQRES 4 A 50 U A A U A G C U C A C SEQRES 1 B 22 C G G C C G U A A C U A U SEQRES 2 B 22 A A C G G U C C U SEQRES 1 C 17 G U C G G G U A A G U U C SEQRES 2 C 17 C G A C SEQRES 1 D 13 G A C U G G G G C G G U C SEQRES 1 E 19 G A A C G U C G U G A G A SEQRES 2 E 19 C A G U U C SEQRES 1 F 19 C C U A G U A C G A G A G SEQRES 2 F 19 G A C C G G SEQRES 1 G 141 ALA LYS LYS VAL GLN ALA TYR VAL LYS LEU GLN VAL ALA SEQRES 2 G 141 ALA GLY MET ALA ASN PRO SER PRO PRO VAL GLY PRO ALA SEQRES 3 G 141 LEU GLY GLN GLN GLY VAL ASN ILE MET GLU PHE CYS LYS SEQRES 4 G 141 ALA PHE ASN ALA LYS THR ASP SER ILE GLU LYS GLY LEU SEQRES 5 G 141 PRO ILE PRO VAL VAL ILE THR VAL TYR ALA ASP ARG SER SEQRES 6 G 141 PHE THR PHE VAL THR LYS THR PRO PRO ALA ALA VAL LEU SEQRES 7 G 141 LEU LYS LYS ALA ALA GLY ILE LYS SER GLY SER GLY LYS SEQRES 8 G 141 PRO ASN LYS ASP LYS VAL GLY LYS ILE SER ARG ALA GLN SEQRES 9 G 141 LEU GLN GLU ILE ALA GLN THR LYS ALA ALA ASP MET THR SEQRES 10 G 141 GLY ALA ASP ILE GLU ALA MET THR ARG SER ILE GLU GLY SEQRES 11 G 141 THR ALA ARG SER MET GLY LEU VAL VAL GLU ASP SEQRES 1 H 18 C G U C A C A C C A U G G SEQRES 2 H 18 G A G U G SEQRES 1 h 19 C A U G A C U G G G G U G SEQRES 2 h 19 A A G U C G SEQRES 1 I 123 ALA THR VAL ASN GLN LEU VAL ARG LYS PRO ARG ALA ARG SEQRES 2 I 123 LYS VAL ALA LYS SER ASN VAL PRO ALA LEU GLU ALA CYS SEQRES 3 I 123 PRO GLN LYS ARG GLY VAL CYS THR ARG VAL TYR THR THR SEQRES 4 I 123 THR PRO LYS LYS PRO ASN SER ALA LEU ARG LYS VAL CYS SEQRES 5 I 123 ARG VAL ARG LEU THR ASN GLY PHE GLU VAL THR SER TYR SEQRES 6 I 123 ILE GLY GLY GLU GLY HIS ASN LEU GLN GLU HIS SER VAL SEQRES 7 I 123 ILE LEU ILE ARG GLY GLY ARG VAL LYS ASP LEU PRO GLY SEQRES 8 I 123 VAL ARG TYR HIS THR VAL ARG GLY ALA LEU ASP CYS SER SEQRES 9 I 123 GLY VAL LYS ASP ARG LYS GLN ALA ARG SER LYS TYR GLY SEQRES 10 I 123 VAL LYS ARG PRO LYS ALA SEQRES 1 J 185 MET THR LEU LYS GLU LEU TYR ALA GLU THR ARG SER HIS SEQRES 2 J 185 MET GLN LYS SER LEU GLU VAL LEU GLU HIS ASN LEU ALA SEQRES 3 J 185 GLY LEU ARG THR GLY ARG ALA ASN PRO ALA LEU LEU LEU SEQRES 4 J 185 HIS LEU LYS VAL GLU TYR TYR GLY ALA HIS VAL PRO LEU SEQRES 5 J 185 ASN GLN ILE ALA THR VAL THR ALA PRO ASP PRO ARG THR SEQRES 6 J 185 LEU VAL VAL GLN SER TRP ASP GLN ASN ALA LEU LYS ALA SEQRES 7 J 185 ILE GLU LYS ALA ILE ARG ASP SER ASP LEU GLY LEU ASN SEQRES 8 J 185 PRO SER ASN LYS GLY ASP ALA LEU TYR ILE ASN ILE PRO SEQRES 9 J 185 PRO LEU THR GLU GLU ARG ARG LYS ASP LEU VAL ARG ALA SEQRES 10 J 185 VAL ARG GLN TYR ALA GLU GLU GLY ARG VAL ALA ILE ARG SEQRES 11 J 185 ASN ILE ARG ARG GLU ALA LEU ASP LYS LEU LYS LYS LEU SEQRES 12 J 185 ALA LYS GLU LEU HIS LEU SER GLU ASP GLU THR LYS ARG SEQRES 13 J 185 ALA GLU ALA GLU ILE GLN LYS ILE THR ASP GLU PHE ILE SEQRES 14 J 185 ALA LYS ALA ASP GLN LEU ALA GLU LYS LYS GLU GLN GLU SEQRES 15 J 185 ILE LEU GLY HELIX 1 1 GLY G 24 GLN G 29 1 6 HELIX 2 2 ASN G 33 GLU G 49 1 17 HELIX 3 3 PRO G 74 GLY G 84 1 11 HELIX 4 4 ARG G 102 ALA G 113 1 12 HELIX 5 5 ASP G 120 GLY G 136 1 17 HELIX 6 6 THR I 2 LYS I 9 1 8 HELIX 7 7 THR J 2 GLY J 27 1 26 HELIX 8 8 PRO J 35 LEU J 39 5 5 HELIX 9 9 LEU J 52 ILE J 55 1 4 HELIX 10 10 ASP J 72 ARG J 84 1 13 HELIX 11 11 THR J 107 LEU J 147 1 41 HELIX 12 12 SER J 150 LEU J 184 1 35 SHEET 1 A 3 VAL G 8 VAL G 12 0 SHEET 2 A 3 ILE G 54 VAL G 60 -1 O VAL G 56 N LEU G 10 SHEET 3 A 3 PHE G 66 THR G 70 -1 O THR G 67 N THR G 59 SHEET 1 B 2 GLY G 98 SER G 101 0 SHEET 2 B 2 LEU G 137 GLU G 140 1 O VAL G 138 N ILE G 100 SHEET 1 C 2 LYS I 29 ARG I 30 0 SHEET 2 C 2 LEU I 80 ILE I 81 -1 O ILE I 81 N LYS I 29 SHEET 1 D 2 VAL I 51 ARG I 55 0 SHEET 2 D 2 GLU I 61 TYR I 65 -1 O SER I 64 N CYS I 52 SHEET 1 E 2 LYS J 42 TYR J 45 0 SHEET 2 E 2 ALA J 48 PRO J 51 -1 O VAL J 50 N VAL J 43 SHEET 1 F 4 ALA J 56 THR J 59 0 SHEET 2 F 4 THR J 65 SER J 70 -1 O GLN J 69 N THR J 57 SHEET 3 F 4 ALA J 98 ASN J 102 -1 O ILE J 101 N LEU J 66 SHEET 4 F 4 PRO J 92 ASN J 94 -1 N SER J 93 O TYR J 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000