PDB Short entry for 3J2Q HEADER BLOOD CLOTTING 11-DEC-12 3J2Q TITLE MODEL OF MEMBRANE-BOUND FACTOR VIII ORGANIZED IN 2D CRYSTALS CAVEAT 3J2Q SER B 2018 HAS WRONG CHIRALITY AT ATOM CA ILE B 2135 HAS CAVEAT 2 3J2Q WRONG CHIRALITY AT ATOM CB NAG B 2401 HAS WRONG CHIRALITY CAVEAT 3 3J2Q AT ATOM C1 NAG B 2402 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VIII HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-764; COMPND 5 SYNONYM: ANTIHEMOPHILIC FACTOR, AHF, PROCOAGULANT COMPONENT, FACTOR COMPND 6 VIIIA HEAVY CHAIN, 92 KDA ISOFORM; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COAGULATION FACTOR VIII LIGHT CHAIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 1668-2351; COMPND 12 SYNONYM: ANTIHEMOPHILIC FACTOR, AHF, PROCOAGULANT COMPONENT, FACTOR COMPND 13 VIIIA LIGHT CHAIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F8, F8C; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL: OVARY; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: F8, F8C; SOURCE 15 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 18 EXPRESSION_SYSTEM_CELL: OVARY KEYWDS BLOOD COAGULATION, COFACTOR, FACTOR VIII, HEMOPHILIA, BLOOD CLOTTING EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR S.STOILOVA-MCPHIE,G.C.LYNCH,S.LUDTKE,B.M.PETTITT REVDAT 2 29-JUL-20 3J2Q 1 CAVEAT COMPND REMARK SEQADV REVDAT 2 2 1 HETNAM LINK ATOM REVDAT 1 11-SEP-13 3J2Q 0 JRNL AUTH S.STOILOVA-MCPHIE,G.C.LYNCH,S.LUDTKE,B.M.PETTITT JRNL TITL DOMAIN ORGANIZATION OF MEMBRANE-BOUND FACTOR VIII. JRNL REF BIOPOLYMERS V. 99 448 2013 JRNL REFN ISSN 0006-3525 JRNL PMID 23616213 JRNL DOI 10.1002/BIP.22199 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.STOILOVA-MCPHIE,B.O.VILLOUTREIX,K.MERTENS,G.KEMBALL-COOK, REMARK 1 AUTH 2 A.HOLZENBURG REMARK 1 TITL 3-DIMENSIONAL STRUCTURE OF MEMBRANE-BOUND COAGULATION FACTOR REMARK 1 TITL 2 VIII: MODELING OF THE FACTOR VIII HETERODIMER WITHIN A REMARK 1 TITL 3 3-DIMENSIONAL DENSITY MAP DERIVED BY ELECTRON REMARK 1 TITL 4 CRYSTALLOGRAPHY. REMARK 1 REF BLOOD V. 99 1215 2002 REMARK 1 REFN ISSN 0006-4971 REMARK 1 PMID 11830468 REMARK 1 DOI 10.1182/BLOOD.V99.4.1215 REMARK 2 REMARK 2 RESOLUTION. 15.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 15.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3J2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000160176. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 2D ARRAY REMARK 240 SPECIMEN TYPE : NEGATIVE STAINING REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : NULL REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : JEOL 2010F REMARK 240 DETECTOR TYPE : NULL REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 240 RESOLUTION RANGE HIGH (A) : NULL REMARK 240 RESOLUTION RANGE LOW (A) : NULL REMARK 240 DATA SCALING SOFTWARE : NULL REMARK 240 COMPLETENESS FOR RANGE (%) : NULL REMARK 240 DATA REDUNDANCY : NULL REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :NULL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :NULL REMARK 240 COMPLETENESS FOR SHELL (%) : NULL REMARK 240 DATA REDUNDANCY IN SHELL : NULL REMARK 240 R MERGE FOR SHELL (I) : NULL REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 ASP A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 VAL A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 ARG A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 ARG A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 LYS A 36 REMARK 465 SER A 37 REMARK 465 PHE A 38 REMARK 465 PRO A 39 REMARK 465 PHE A 40 REMARK 465 ASN A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 GLU A 211 REMARK 465 THR A 212 REMARK 465 LYS A 213 REMARK 465 ASN A 214 REMARK 465 SER A 215 REMARK 465 LEU A 216 REMARK 465 MET A 217 REMARK 465 GLN A 218 REMARK 465 ASP A 219 REMARK 465 ARG A 220 REMARK 465 ASP A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 GLN A 334 REMARK 465 LEU A 335 REMARK 465 ARG A 336 REMARK 465 MET A 337 REMARK 465 LYS A 338 REMARK 465 ASN A 339 REMARK 465 ASN A 340 REMARK 465 GLU A 341 REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 GLU A 344 REMARK 465 ASP A 345 REMARK 465 TYR A 346 REMARK 465 ASP A 347 REMARK 465 ASP A 348 REMARK 465 ASP A 349 REMARK 465 LEU A 350 REMARK 465 THR A 351 REMARK 465 ASP A 352 REMARK 465 SER A 353 REMARK 465 GLU A 354 REMARK 465 MET A 355 REMARK 465 ASP A 356 REMARK 465 VAL A 357 REMARK 465 VAL A 358 REMARK 465 ARG A 359 REMARK 465 PHE A 360 REMARK 465 ASP A 361 REMARK 465 ASP A 362 REMARK 465 ASP A 363 REMARK 465 ASN A 364 REMARK 465 SER A 365 REMARK 465 PRO A 366 REMARK 465 SER A 367 REMARK 465 PHE A 368 REMARK 465 ILE A 369 REMARK 465 GLN A 370 REMARK 465 ILE A 371 REMARK 465 ARG A 372 REMARK 465 SER A 373 REMARK 465 VAL A 374 REMARK 465 ALA A 375 REMARK 465 LYS A 376 REMARK 465 ASN A 714 REMARK 465 THR A 715 REMARK 465 GLY A 716 REMARK 465 ASP A 717 REMARK 465 TYR A 718 REMARK 465 TYR A 719 REMARK 465 GLU A 720 REMARK 465 ASP A 721 REMARK 465 SER A 722 REMARK 465 TYR A 723 REMARK 465 GLU A 724 REMARK 465 ASP A 725 REMARK 465 ILE A 726 REMARK 465 SER A 727 REMARK 465 ALA A 728 REMARK 465 TYR A 729 REMARK 465 LEU A 730 REMARK 465 LEU A 731 REMARK 465 SER A 732 REMARK 465 LYS A 733 REMARK 465 ASN A 734 REMARK 465 ASN A 735 REMARK 465 ALA A 736 REMARK 465 ILE A 737 REMARK 465 GLU A 738 REMARK 465 PRO A 739 REMARK 465 ARG A 740 REMARK 465 SER A 741 REMARK 465 PHE A 742 REMARK 465 SER A 743 REMARK 465 GLN A 744 REMARK 465 ASN A 745 REMARK 465 PRO A 746 REMARK 465 PRO A 747 REMARK 465 VAL A 748 REMARK 465 LEU A 749 REMARK 465 LYS A 750 REMARK 465 ARG A 751 REMARK 465 HIS A 752 REMARK 465 GLN A 753 REMARK 465 ARG A 754 REMARK 465 GLU B 1649 REMARK 465 ILE B 1650 REMARK 465 THR B 1651 REMARK 465 ARG B 1652 REMARK 465 THR B 1653 REMARK 465 THR B 1654 REMARK 465 LEU B 1655 REMARK 465 GLN B 1656 REMARK 465 SER B 1657 REMARK 465 ASP B 1658 REMARK 465 GLN B 1659 REMARK 465 GLU B 1660 REMARK 465 GLU B 1661 REMARK 465 ILE B 1662 REMARK 465 ASP B 1663 REMARK 465 TYR B 1664 REMARK 465 ASP B 1665 REMARK 465 ASP B 1666 REMARK 465 THR B 1667 REMARK 465 ILE B 1668 REMARK 465 SER B 1669 REMARK 465 VAL B 1670 REMARK 465 GLU B 1671 REMARK 465 MET B 1672 REMARK 465 LYS B 1673 REMARK 465 LYS B 1674 REMARK 465 GLU B 1675 REMARK 465 ASP B 1676 REMARK 465 PHE B 1677 REMARK 465 ASP B 1678 REMARK 465 ILE B 1679 REMARK 465 TYR B 1680 REMARK 465 ASP B 1681 REMARK 465 GLU B 1682 REMARK 465 ASP B 1683 REMARK 465 GLU B 1684 REMARK 465 ASN B 1685 REMARK 465 GLN B 1686 REMARK 465 SER B 1687 REMARK 465 PRO B 1688 REMARK 465 ARG B 1689 REMARK 465 SER B 1690 REMARK 465 SER B 1714 REMARK 465 PRO B 1715 REMARK 465 HIS B 1716 REMARK 465 VAL B 1717 REMARK 465 LEU B 1718 REMARK 465 ARG B 1719 REMARK 465 ASN B 1720 REMARK 465 ARG B 1721 REMARK 465 ALA B 1722 REMARK 465 GLN B 1723 REMARK 465 SER B 1724 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET B 1711 OG SER B 2133 0.85 REMARK 500 SD MET B 1711 CB SER B 2133 1.25 REMARK 500 O VAL B 2016 CD PRO B 2024 1.28 REMARK 500 C GLN A 117 CB HIS B 2137 1.54 REMARK 500 CG MET B 1711 OG SER B 2133 1.55 REMARK 500 CG1 VAL B 1933 CB ALA B 2028 1.57 REMARK 500 OH TYR B 2017 CB SER B 2029 1.58 REMARK 500 CB GLN A 117 CB HIS B 2137 1.60 REMARK 500 CB TYR B 2017 O PRO B 2024 1.61 REMARK 500 CZ TYR B 2017 CB SER B 2029 1.67 REMARK 500 NE2 GLN A 117 N HIS B 2137 1.69 REMARK 500 CA GLN A 117 CB HIS B 2137 1.70 REMARK 500 O TYR B 2017 N SER B 2018 1.74 REMARK 500 O VAL B 2016 CG PRO B 2024 1.80 REMARK 500 NE2 GLN A 117 C LYS B 2136 1.81 REMARK 500 CG GLN A 117 CB HIS B 2137 1.81 REMARK 500 CG GLN A 117 CA HIS B 2137 1.81 REMARK 500 O MET B 1711 CA SER B 2132 1.86 REMARK 500 CE MET B 1711 CB SER B 2133 1.87 REMARK 500 OH TYR B 2017 OG SER B 2029 1.88 REMARK 500 CD GLN A 117 N HIS B 2137 1.89 REMARK 500 C TYR B 2017 OG1 THR B 2023 1.89 REMARK 500 CB ALA B 1993 O GLN B 2022 1.90 REMARK 500 CE2 TYR B 2017 CB SER B 2029 1.94 REMARK 500 O MET B 1711 C SER B 2132 1.99 REMARK 500 OG SER A 119 CD1 ILE B 2139 2.01 REMARK 500 O GLN A 117 CB HIS B 2137 2.02 REMARK 500 CA GLY B 1710 NH1 ARG B 2090 2.03 REMARK 500 CG ASN B 2118 C1 NAG B 2402 2.06 REMARK 500 CD2 LEU B 2013 NE2 HIS B 2054 2.07 REMARK 500 N THR A 118 ND1 HIS B 2137 2.07 REMARK 500 OH TYR A 114 NH1 ARG B 1997 2.08 REMARK 500 O GLY A 643 NE2 GLN A 645 2.09 REMARK 500 CE MET B 1711 OG SER B 2133 2.09 REMARK 500 C VAL B 2016 CG PRO B 2024 2.10 REMARK 500 O GLY B 1725 CE2 PHE B 2093 2.10 REMARK 500 C VAL B 2016 CD PRO B 2024 2.13 REMARK 500 O GLY B 1725 CD2 PHE B 2093 2.14 REMARK 500 O MET B 1711 O SER B 2132 2.14 REMARK 500 O TYR B 2017 OG1 THR B 2023 2.15 REMARK 500 CB SER A 119 CG1 ILE B 2139 2.16 REMARK 500 NH1 ARG A 121 O3 NAG B 2402 2.16 REMARK 500 O PRO A 492 N GLY A 494 2.18 REMARK 500 O TYR A 16 OG SER A 241 2.19 REMARK 500 CB GLN A 117 CG HIS B 2137 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 437 C5 BMA D 4 1565 0.18 REMARK 500 N PHE A 579 C ALA B 2146 1565 0.19 REMARK 500 ND2 ASN A 572 O VAL B 2243 1565 0.22 REMARK 500 CB GLU A 604 N PHE B 2126 1565 0.25 REMARK 500 C CYS A 630 CG1 VAL B 2257 1565 0.28 REMARK 500 CG2 VAL A 708 CB GLU B 2259 1565 0.29 REMARK 500 CA ASP A 666 CZ PHE B 2275 1565 0.31 REMARK 500 SG CYS A 554 CG MET B 2238 1565 0.33 REMARK 500 N PHE A 658 CG LEU B 2273 1565 0.35 REMARK 500 CG PHE A 428 OD1 ASN B 2172 1565 0.35 REMARK 500 CA LEU A 547 O ASP B 2170 1565 0.35 REMARK 500 CD2 TYR A 636 CA LEU B 2306 1565 0.35 REMARK 500 O GLY A 563 C GLN B 2189 1565 0.36 REMARK 500 CA GLU A 456 CE LYS B 2236 1565 0.37 REMARK 500 CG PHE A 576 CG ASP B 2298 1565 0.38 REMARK 500 CA ARG A 527 CB ARG B 2304 1565 0.39 REMARK 500 CG1 VAL A 573 CA THR B 2241 1565 0.39 REMARK 500 CA ASN A 564 N GLN B 2189 1565 0.41 REMARK 500 CB CYS A 630 CA VAL B 2257 1565 0.41 REMARK 500 OG SER A 710 CD1 TRP B 2313 1565 0.41 REMARK 500 N SER A 409 C ILE B 2037 1565 0.44 REMARK 500 CG ASN A 597 CA ALA B 2089 1565 0.45 REMARK 500 O ASN A 590 N GLU B 2165 1565 0.45 REMARK 500 CB ASN A 590 C GLU B 2165 1565 0.45 REMARK 500 CA CYS A 692 CG ASN B 2277 1565 0.46 REMARK 500 CE1 PHE A 608 CD1 LEU B 2151 1565 0.46 REMARK 500 CA TYR A 555 CA LYS B 2236 1565 0.46 REMARK 500 CA GLN B 1820 NZ LYS B 2227 1565 0.46 REMARK 500 CG TYR A 638 CB VAL B 2240 1565 0.47 REMARK 500 CD2 PHE A 658 O LEU B 2273 1565 0.47 REMARK 500 CG GLN B 1820 CD LYS B 2227 1565 0.47 REMARK 500 CA SER A 616 CD ARG B 2147 1565 0.47 REMARK 500 CB PRO A 521 OG1 THR B 2237 1565 0.47 REMARK 500 C PRO A 521 CA LEU B 2331 1565 0.48 REMARK 500 CB ASN A 572 N VAL B 2243 1565 0.48 REMARK 500 CG GLU A 683 O PRO B 2226 1565 0.48 REMARK 500 CB GLU A 589 CE LYS B 2085 1565 0.48 REMARK 500 N ILE A 617 NH1 ARG B 2147 1565 0.49 REMARK 500 C LYS A 424 N LEU B 2025 1565 0.50 REMARK 500 O TRP A 393 CE1 HIS B 2031 1565 0.50 REMARK 500 O PRO A 402 CZ3 TRP B 2046 1565 0.50 REMARK 500 CG LEU A 640 CG PRO B 2300 1565 0.51 REMARK 500 CA ASN A 572 C GLY B 2242 1565 0.51 REMARK 500 CB TYR A 636 CG LEU B 2306 1565 0.51 REMARK 500 N TYR A 407 CG2 THR B 2038 1565 0.51 REMARK 500 C GLY A 549 CA SER B 2173 1565 0.51 REMARK 500 O ARG A 593 CA LEU B 2053 1565 0.52 REMARK 500 CB TYR A 395 O ASP B 2074 1565 0.52 REMARK 500 OH TYR A 636 CA TYR B 2305 1565 0.53 REMARK 500 CG TYR A 656 CD2 LEU B 2261 1565 0.53 REMARK 500 REMARK 500 THIS ENTRY HAS 3311 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 16 C TYR A 16 O -0.229 REMARK 500 LYS A 107 CG LYS A 107 CD 0.222 REMARK 500 ARG A 121 NE ARG A 121 CZ 0.112 REMARK 500 ARG A 121 CZ ARG A 121 NH1 0.171 REMARK 500 ARG A 121 CZ ARG A 121 NH2 0.085 REMARK 500 SER A 210 C SER A 210 O -0.229 REMARK 500 PRO A 333 C PRO A 333 O -0.228 REMARK 500 GLN A 602 CD GLN A 602 NE2 0.158 REMARK 500 LYS A 713 C LYS A 713 O -0.229 REMARK 500 SER B1713 C SER B1713 O -0.229 REMARK 500 ASN B1904 CG ASN B1904 OD1 0.214 REMARK 500 ASN B1904 CG ASN B1904 ND2 0.209 REMARK 500 TYR B2017 C SER B2018 N 0.279 REMARK 500 SER B2018 N SER B2018 CA 0.274 REMARK 500 SER B2018 CA SER B2018 C 0.381 REMARK 500 SER B2018 C ASN B2019 N 0.222 REMARK 500 ASN B2019 N ASN B2019 CA 0.188 REMARK 500 ASN B2019 CB ASN B2019 CG 0.271 REMARK 500 ASN B2019 CA ASN B2019 C 0.305 REMARK 500 ASN B2019 C LYS B2020 N 0.208 REMARK 500 LYS B2020 N LYS B2020 CA 0.247 REMARK 500 LYS B2020 CA LYS B2020 C 0.384 REMARK 500 LYS B2020 C LYS B2020 O -0.154 REMARK 500 LYS B2020 C CYS B2021 N 0.214 REMARK 500 LYS B2085 CA LYS B2085 CB 0.134 REMARK 500 SER B2132 CA SER B2132 CB 0.305 REMARK 500 TYR B2332 C TYR B2332 O -0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 CD - NE - CZ ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -12.0 DEGREES REMARK 500 LEU A 277 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU A 398 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU B1945 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 TYR B2017 O - C - N ANGL. DEV. = -49.1 DEGREES REMARK 500 SER B2018 CB - CA - C ANGL. DEV. = 38.9 DEGREES REMARK 500 SER B2018 N - CA - CB ANGL. DEV. = -39.8 DEGREES REMARK 500 SER B2018 CA - CB - OG ANGL. DEV. = -32.2 DEGREES REMARK 500 SER B2018 N - CA - C ANGL. DEV. = 22.3 DEGREES REMARK 500 SER B2018 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 ASN B2019 C - N - CA ANGL. DEV. = 22.5 DEGREES REMARK 500 ASN B2019 CB - CA - C ANGL. DEV. = -39.2 DEGREES REMARK 500 ASN B2019 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ASN B2019 N - CA - C ANGL. DEV. = 25.5 DEGREES REMARK 500 ASN B2019 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 ASN B2019 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 LYS B2020 C - N - CA ANGL. DEV. = 25.9 DEGREES REMARK 500 LYS B2020 CG - CD - CE ANGL. DEV. = -18.8 DEGREES REMARK 500 LYS B2020 N - CA - C ANGL. DEV. = 27.5 DEGREES REMARK 500 LYS B2020 CA - C - O ANGL. DEV. = -70.4 DEGREES REMARK 500 LYS B2020 O - C - N ANGL. DEV. = 57.3 DEGREES REMARK 500 CYS B2021 C - N - CA ANGL. DEV. = -34.6 DEGREES REMARK 500 LEU B2050 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS B2085 CD - CE - NZ ANGL. DEV. = -31.6 DEGREES REMARK 500 ASP B2131 CB - CA - C ANGL. DEV. = 23.1 DEGREES REMARK 500 ASP B2131 N - CA - CB ANGL. DEV. = -22.5 DEGREES REMARK 500 SER B2132 CB - CA - C ANGL. DEV. = 38.1 DEGREES REMARK 500 SER B2132 N - CA - CB ANGL. DEV. = -20.8 DEGREES REMARK 500 ILE B2135 CB - CA - C ANGL. DEV. = 34.5 DEGREES REMARK 500 ILE B2135 N - CA - CB ANGL. DEV. = -17.6 DEGREES REMARK 500 ILE B2135 CA - CB - CG1 ANGL. DEV. = 37.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 6 44.37 -74.33 REMARK 500 ASP A 15 -113.64 -149.82 REMARK 500 TYR A 46 122.46 100.51 REMARK 500 LYS A 48 -158.80 -115.71 REMARK 500 LEU A 50 -160.26 -109.22 REMARK 500 VAL A 52 -174.17 -69.82 REMARK 500 THR A 55 26.94 -74.06 REMARK 500 LEU A 58 -110.86 -116.89 REMARK 500 ILE A 61 154.29 -39.84 REMARK 500 ALA A 62 105.25 177.95 REMARK 500 PRO A 67 -123.02 -91.35 REMARK 500 TRP A 68 -30.46 -36.02 REMARK 500 THR A 75 109.03 -52.84 REMARK 500 VAL A 80 -45.32 -25.54 REMARK 500 SER A 109 -117.38 -138.71 REMARK 500 GLU A 110 -57.32 71.10 REMARK 500 TYR A 114 161.95 157.53 REMARK 500 ASP A 116 39.25 -79.63 REMARK 500 GLN A 117 -56.99 65.44 REMARK 500 THR A 118 114.04 29.15 REMARK 500 SER A 119 -174.92 -62.69 REMARK 500 SER A 133 125.27 142.53 REMARK 500 ALA A 148 -65.44 -20.08 REMARK 500 ASP A 150 -178.88 -173.96 REMARK 500 PRO A 151 116.79 -21.13 REMARK 500 LEU A 168 -74.64 -89.09 REMARK 500 GLU A 181 81.23 -55.54 REMARK 500 LEU A 184 -20.06 -38.86 REMARK 500 GLU A 204 -0.57 -55.55 REMARK 500 SER A 207 -165.60 -79.48 REMARK 500 ALA A 225 110.86 -19.59 REMARK 500 ALA A 227 72.15 168.05 REMARK 500 MET A 231 -174.32 -173.19 REMARK 500 HIS A 232 27.41 -178.59 REMARK 500 VAL A 234 132.54 -36.53 REMARK 500 ASN A 235 -7.13 54.08 REMARK 500 ASN A 239 -71.56 54.54 REMARK 500 ARG A 240 -3.56 -150.38 REMARK 500 SER A 241 154.00 -43.02 REMARK 500 PRO A 243 -92.45 -85.60 REMARK 500 LYS A 251 -153.66 -143.15 REMARK 500 PRO A 264 75.61 -54.39 REMARK 500 HIS A 267 -169.87 -121.79 REMARK 500 SER A 268 104.23 -169.24 REMARK 500 THR A 275 44.99 80.91 REMARK 500 VAL A 278 -68.32 -133.34 REMARK 500 ARG A 279 -151.54 -96.76 REMARK 500 ASN A 280 34.88 -78.02 REMARK 500 SER A 285 117.71 -175.20 REMARK 500 PRO A 290 -87.64 -13.98 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 56 HIS A 57 138.46 REMARK 500 TYR A 237 VAL A 238 -145.67 REMARK 500 VAL A 278 ARG A 279 143.18 REMARK 500 HIS A 281 ARG A 282 -147.01 REMARK 500 ARG A 282 GLN A 283 -149.53 REMARK 500 PHE A 293 LEU A 294 149.85 REMARK 500 PHE A 673 SER A 674 -135.86 REMARK 500 ARG B 1705 LEU B 1706 142.72 REMARK 500 LEU B 1878 PHE B 1879 -148.75 REMARK 500 GLU B 1885 THR B 1886 149.37 REMARK 500 PRO B 2048 LYS B 2049 -149.49 REMARK 500 ASN B 2141 PRO B 2142 148.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR B2017 -46.95 REMARK 500 ASN B2019 12.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 107 O REMARK 620 2 GLU A 122 O 65.7 REMARK 620 3 ASP A 125 OD1 95.1 75.1 REMARK 620 4 ASP A 126 OD2 144.9 117.4 56.2 REMARK 620 5 ASP A 126 OD1 156.8 91.1 77.3 45.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B2407 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1954 ND1 REMARK 620 2 CYS B2000 SG 126.8 REMARK 620 3 HIS B2005 ND1 117.4 115.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CDZ RELATED DB: PDB REMARK 900 FACTOR VIII CRYSTAL STRUCTURE USED AS TEMPLATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT F1899L IS A NATURAL VARIANT. DBREF 3J2Q A 1 745 UNP P00451 FA8_HUMAN 20 764 DBREF 3J2Q B 1649 2332 UNP P00451 FA8_HUMAN 1668 2351 SEQADV 3J2Q PRO A 746 UNP P00451 EXPRESSION TAG SEQADV 3J2Q PRO A 747 UNP P00451 EXPRESSION TAG SEQADV 3J2Q VAL A 748 UNP P00451 EXPRESSION TAG SEQADV 3J2Q LEU A 749 UNP P00451 EXPRESSION TAG SEQADV 3J2Q LYS A 750 UNP P00451 EXPRESSION TAG SEQADV 3J2Q ARG A 751 UNP P00451 EXPRESSION TAG SEQADV 3J2Q HIS A 752 UNP P00451 EXPRESSION TAG SEQADV 3J2Q GLN A 753 UNP P00451 EXPRESSION TAG SEQADV 3J2Q ARG A 754 UNP P00451 EXPRESSION TAG SEQADV 3J2Q LEU B 1880 UNP P00451 PHE 1899 SEE REMARK 999 SEQRES 1 A 754 ALA THR ARG ARG TYR TYR LEU GLY ALA VAL GLU LEU SER SEQRES 2 A 754 TRP ASP TYR MET GLN SER ASP LEU GLY GLU LEU PRO VAL SEQRES 3 A 754 ASP ALA ARG PHE PRO PRO ARG VAL PRO LYS SER PHE PRO SEQRES 4 A 754 PHE ASN THR SER VAL VAL TYR LYS LYS THR LEU PHE VAL SEQRES 5 A 754 GLU PHE THR ASP HIS LEU PHE ASN ILE ALA LYS PRO ARG SEQRES 6 A 754 PRO PRO TRP MET GLY LEU LEU GLY PRO THR ILE GLN ALA SEQRES 7 A 754 GLU VAL TYR ASP THR VAL VAL ILE THR LEU LYS ASN MET SEQRES 8 A 754 ALA SER HIS PRO VAL SER LEU HIS ALA VAL GLY VAL SER SEQRES 9 A 754 TYR TRP LYS ALA SER GLU GLY ALA GLU TYR ASP ASP GLN SEQRES 10 A 754 THR SER GLN ARG GLU LYS GLU ASP ASP LYS VAL PHE PRO SEQRES 11 A 754 GLY GLY SER HIS THR TYR VAL TRP GLN VAL LEU LYS GLU SEQRES 12 A 754 ASN GLY PRO MET ALA SER ASP PRO LEU CYS LEU THR TYR SEQRES 13 A 754 SER TYR LEU SER HIS VAL ASP LEU VAL LYS ASP LEU ASN SEQRES 14 A 754 SER GLY LEU ILE GLY ALA LEU LEU VAL CYS ARG GLU GLY SEQRES 15 A 754 SER LEU ALA LYS GLU LYS THR GLN THR LEU HIS LYS PHE SEQRES 16 A 754 ILE LEU LEU PHE ALA VAL PHE ASP GLU GLY LYS SER TRP SEQRES 17 A 754 HIS SER GLU THR LYS ASN SER LEU MET GLN ASP ARG ASP SEQRES 18 A 754 ALA ALA SER ALA ARG ALA TRP PRO LYS MET HIS THR VAL SEQRES 19 A 754 ASN GLY TYR VAL ASN ARG SER LEU PRO GLY LEU ILE GLY SEQRES 20 A 754 CYS HIS ARG LYS SER VAL TYR TRP HIS VAL ILE GLY MET SEQRES 21 A 754 GLY THR THR PRO GLU VAL HIS SER ILE PHE LEU GLU GLY SEQRES 22 A 754 HIS THR PHE LEU VAL ARG ASN HIS ARG GLN ALA SER LEU SEQRES 23 A 754 GLU ILE SER PRO ILE THR PHE LEU THR ALA GLN THR LEU SEQRES 24 A 754 LEU MET ASP LEU GLY GLN PHE LEU LEU PHE CYS HIS ILE SEQRES 25 A 754 SER SER HIS GLN HIS ASP GLY MET GLU ALA TYR VAL LYS SEQRES 26 A 754 VAL ASP SER CYS PRO GLU GLU PRO GLN LEU ARG MET LYS SEQRES 27 A 754 ASN ASN GLU GLU ALA GLU ASP TYR ASP ASP ASP LEU THR SEQRES 28 A 754 ASP SER GLU MET ASP VAL VAL ARG PHE ASP ASP ASP ASN SEQRES 29 A 754 SER PRO SER PHE ILE GLN ILE ARG SER VAL ALA LYS LYS SEQRES 30 A 754 HIS PRO LYS THR TRP VAL HIS TYR ILE ALA ALA GLU GLU SEQRES 31 A 754 GLU ASP TRP ASP TYR ALA PRO LEU VAL LEU ALA PRO ASP SEQRES 32 A 754 ASP ARG SER TYR LYS SER GLN TYR LEU ASN ASN GLY PRO SEQRES 33 A 754 GLN ARG ILE GLY ARG LYS TYR LYS LYS VAL ARG PHE MET SEQRES 34 A 754 ALA TYR THR ASP GLU THR PHE LYS THR ARG GLU ALA ILE SEQRES 35 A 754 GLN HIS GLU SER GLY ILE LEU GLY PRO LEU LEU TYR GLY SEQRES 36 A 754 GLU VAL GLY ASP THR LEU LEU ILE ILE PHE LYS ASN GLN SEQRES 37 A 754 ALA SER ARG PRO TYR ASN ILE TYR PRO HIS GLY ILE THR SEQRES 38 A 754 ASP VAL ARG PRO LEU TYR SER ARG ARG LEU PRO LYS GLY SEQRES 39 A 754 VAL LYS HIS LEU LYS ASP PHE PRO ILE LEU PRO GLY GLU SEQRES 40 A 754 ILE PHE LYS TYR LYS TRP THR VAL THR VAL GLU ASP GLY SEQRES 41 A 754 PRO THR LYS SER ASP PRO ARG CYS LEU THR ARG TYR TYR SEQRES 42 A 754 SER SER PHE VAL ASN MET GLU ARG ASP LEU ALA SER GLY SEQRES 43 A 754 LEU ILE GLY PRO LEU LEU ILE CYS TYR LYS GLU SER VAL SEQRES 44 A 754 ASP GLN ARG GLY ASN GLN ILE MET SER ASP LYS ARG ASN SEQRES 45 A 754 VAL ILE LEU PHE SER VAL PHE ASP GLU ASN ARG SER TRP SEQRES 46 A 754 TYR LEU THR GLU ASN ILE GLN ARG PHE LEU PRO ASN PRO SEQRES 47 A 754 ALA GLY VAL GLN LEU GLU ASP PRO GLU PHE GLN ALA SER SEQRES 48 A 754 ASN ILE MET HIS SER ILE ASN GLY TYR VAL PHE ASP SER SEQRES 49 A 754 LEU GLN LEU SER VAL CYS LEU HIS GLU VAL ALA TYR TRP SEQRES 50 A 754 TYR ILE LEU SER ILE GLY ALA GLN THR ASP PHE LEU SER SEQRES 51 A 754 VAL PHE PHE SER GLY TYR THR PHE LYS HIS LYS MET VAL SEQRES 52 A 754 TYR GLU ASP THR LEU THR LEU PHE PRO PHE SER GLY GLU SEQRES 53 A 754 THR VAL PHE MET SER MET GLU ASN PRO GLY LEU TRP ILE SEQRES 54 A 754 LEU GLY CYS HIS ASN SER ASP PHE ARG ASN ARG GLY MET SEQRES 55 A 754 THR ALA LEU LEU LYS VAL SER SER CYS ASP LYS ASN THR SEQRES 56 A 754 GLY ASP TYR TYR GLU ASP SER TYR GLU ASP ILE SER ALA SEQRES 57 A 754 TYR LEU LEU SER LYS ASN ASN ALA ILE GLU PRO ARG SER SEQRES 58 A 754 PHE SER GLN ASN PRO PRO VAL LEU LYS ARG HIS GLN ARG SEQRES 1 B 684 GLU ILE THR ARG THR THR LEU GLN SER ASP GLN GLU GLU SEQRES 2 B 684 ILE ASP TYR ASP ASP THR ILE SER VAL GLU MET LYS LYS SEQRES 3 B 684 GLU ASP PHE ASP ILE TYR ASP GLU ASP GLU ASN GLN SER SEQRES 4 B 684 PRO ARG SER PHE GLN LYS LYS THR ARG HIS TYR PHE ILE SEQRES 5 B 684 ALA ALA VAL GLU ARG LEU TRP ASP TYR GLY MET SER SER SEQRES 6 B 684 SER PRO HIS VAL LEU ARG ASN ARG ALA GLN SER GLY SER SEQRES 7 B 684 VAL PRO GLN PHE LYS LYS VAL VAL PHE GLN GLU PHE THR SEQRES 8 B 684 ASP GLY SER PHE THR GLN PRO LEU TYR ARG GLY GLU LEU SEQRES 9 B 684 ASN GLU HIS LEU GLY LEU LEU GLY PRO TYR ILE ARG ALA SEQRES 10 B 684 GLU VAL GLU ASP ASN ILE MET VAL THR PHE ARG ASN GLN SEQRES 11 B 684 ALA SER ARG PRO TYR SER PHE TYR SER SER LEU ILE SER SEQRES 12 B 684 TYR GLU GLU ASP GLN ARG GLN GLY ALA GLU PRO ARG LYS SEQRES 13 B 684 ASN PHE VAL LYS PRO ASN GLU THR LYS THR TYR PHE TRP SEQRES 14 B 684 LYS VAL GLN HIS HIS MET ALA PRO THR LYS ASP GLU PHE SEQRES 15 B 684 ASP CYS LYS ALA TRP ALA TYR PHE SER ASP VAL ASP LEU SEQRES 16 B 684 GLU LYS ASP VAL HIS SER GLY LEU ILE GLY PRO LEU LEU SEQRES 17 B 684 VAL CYS HIS THR ASN THR LEU ASN PRO ALA HIS GLY ARG SEQRES 18 B 684 GLN VAL THR VAL GLN GLU PHE ALA LEU PHE LEU THR ILE SEQRES 19 B 684 PHE ASP GLU THR LYS SER TRP TYR PHE THR GLU ASN MET SEQRES 20 B 684 GLU ARG ASN CYS ARG ALA PRO CYS ASN ILE GLN MET GLU SEQRES 21 B 684 ASP PRO THR PHE LYS GLU ASN TYR ARG PHE HIS ALA ILE SEQRES 22 B 684 ASN GLY TYR ILE MET ASP THR LEU PRO GLY LEU VAL MET SEQRES 23 B 684 ALA GLN ASP GLN ARG ILE ARG TRP TYR LEU LEU SER MET SEQRES 24 B 684 GLY SER ASN GLU ASN ILE HIS SER ILE HIS PHE SER GLY SEQRES 25 B 684 HIS VAL PHE THR VAL ARG LYS LYS GLU GLU TYR LYS MET SEQRES 26 B 684 ALA LEU TYR ASN LEU TYR PRO GLY VAL PHE GLU THR VAL SEQRES 27 B 684 GLU MET LEU PRO SER LYS ALA GLY ILE TRP ARG VAL GLU SEQRES 28 B 684 CYS LEU ILE GLY GLU HIS LEU HIS ALA GLY MET SER THR SEQRES 29 B 684 LEU PHE LEU VAL TYR SER ASN LYS CYS GLN THR PRO LEU SEQRES 30 B 684 GLY MET ALA SER GLY HIS ILE ARG ASP PHE GLN ILE THR SEQRES 31 B 684 ALA SER GLY GLN TYR GLY GLN TRP ALA PRO LYS LEU ALA SEQRES 32 B 684 ARG LEU HIS TYR SER GLY SER ILE ASN ALA TRP SER THR SEQRES 33 B 684 LYS GLU PRO PHE SER TRP ILE LYS VAL ASP LEU LEU ALA SEQRES 34 B 684 PRO MET ILE ILE HIS GLY ILE LYS THR GLN GLY ALA ARG SEQRES 35 B 684 GLN LYS PHE SER SER LEU TYR ILE SER GLN PHE ILE ILE SEQRES 36 B 684 MET TYR SER LEU ASP GLY LYS LYS TRP GLN THR TYR ARG SEQRES 37 B 684 GLY ASN SER THR GLY THR LEU MET VAL PHE PHE GLY ASN SEQRES 38 B 684 VAL ASP SER SER GLY ILE LYS HIS ASN ILE PHE ASN PRO SEQRES 39 B 684 PRO ILE ILE ALA ARG TYR ILE ARG LEU HIS PRO THR HIS SEQRES 40 B 684 TYR SER ILE ARG SER THR LEU ARG MET GLU LEU MET GLY SEQRES 41 B 684 CYS ASP LEU ASN SER CYS SER MET PRO LEU GLY MET GLU SEQRES 42 B 684 SER LYS ALA ILE SER ASP ALA GLN ILE THR ALA SER SER SEQRES 43 B 684 TYR PHE THR ASN MET PHE ALA THR TRP SER PRO SER LYS SEQRES 44 B 684 ALA ARG LEU HIS LEU GLN GLY ARG SER ASN ALA TRP ARG SEQRES 45 B 684 PRO GLN VAL ASN ASN PRO LYS GLU TRP LEU GLN VAL ASP SEQRES 46 B 684 PHE GLN LYS THR MET LYS VAL THR GLY VAL THR THR GLN SEQRES 47 B 684 GLY VAL LYS SER LEU LEU THR SER MET TYR VAL LYS GLU SEQRES 48 B 684 PHE LEU ILE SER SER SER GLN ASP GLY HIS GLN TRP THR SEQRES 49 B 684 LEU PHE PHE GLN ASN GLY LYS VAL LYS VAL PHE GLN GLY SEQRES 50 B 684 ASN GLN ASP SER PHE THR PRO VAL VAL ASN SER LEU ASP SEQRES 51 B 684 PRO PRO LEU LEU THR ARG TYR LEU ARG ILE HIS PRO GLN SEQRES 52 B 684 SER TRP VAL HIS GLN ILE ALA LEU ARG MET GLU VAL LEU SEQRES 53 B 684 GLY CYS GLU ALA GLN ASP LEU TYR MODRES 3J2Q ASN B 2118 ASN GLYCOSYLATION SITE MODRES 3J2Q ASN A 239 ASN GLYCOSYLATION SITE MODRES 3J2Q ASN B 1810 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET BMA D 2 11 HET MAN D 3 11 HET BMA D 4 11 HET CU A 803 1 HET CA A 804 1 HET NAG B2401 14 HET NAG B2402 14 HET CU B2407 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN C6 H12 O6 FORMUL 5 CU 2(CU 2+) FORMUL 6 CA CA 2+ HELIX 1 1 SER A 119 GLU A 124 1 6 HELIX 2 2 LEU A 141 GLY A 145 5 5 HELIX 3 3 ASP A 163 LEU A 172 1 10 HELIX 4 4 THR A 233 TYR A 237 5 5 HELIX 5 5 ILE A 312 HIS A 317 1 6 HELIX 6 6 THR A 516 GLY A 520 5 5 HELIX 7 7 MET A 539 ALA A 544 1 6 HELIX 8 8 ASN A 582 SER A 584 5 3 HELIX 9 9 THR A 588 PHE A 594 1 7 HELIX 10 10 ASP A 605 SER A 611 1 7 HELIX 11 11 GLU B 1844 SER B 1849 1 6 HELIX 12 12 TYR B 1890 MET B 1895 1 6 HELIX 13 13 ILE B 2002 HIS B 2007 1 6 HELIX 14 14 SER B 2186 ALA B 2188 5 3 HELIX 15 15 SER B 2204 ALA B 2208 5 5 SHEET 1 A 3 ARG A 4 TYR A 5 0 SHEET 2 A 3 THR A 83 LEU A 88 1 O VAL A 85 N TYR A 5 SHEET 3 A 3 HIS A 134 THR A 135 -1 O HIS A 134 N LEU A 88 SHEET 1 B 3 ARG A 4 TYR A 5 0 SHEET 2 B 3 THR A 83 LEU A 88 1 O VAL A 85 N TYR A 5 SHEET 3 B 3 TRP A 138 GLN A 139 -1 O TRP A 138 N VAL A 84 SHEET 1 C 3 GLY A 73 GLU A 79 0 SHEET 2 C 3 GLY A 174 CYS A 179 1 O LEU A 177 N ILE A 76 SHEET 3 C 3 CYS A 153 LEU A 154 -1 N LEU A 154 O VAL A 178 SHEET 1 D 3 GLY A 73 GLU A 79 0 SHEET 2 D 3 GLY A 174 CYS A 179 1 O LEU A 177 N ILE A 76 SHEET 3 D 3 SER A 157 TYR A 158 -1 N TYR A 158 O GLY A 174 SHEET 1 E 3 LYS A 194 LEU A 197 0 SHEET 2 E 3 VAL A 253 VAL A 257 1 O HIS A 256 N PHE A 195 SHEET 3 E 3 THR A 295 THR A 298 -1 O ALA A 296 N TRP A 255 SHEET 1 F 5 VAL A 426 TYR A 431 0 SHEET 2 F 5 THR A 381 GLU A 390 -1 N ALA A 387 O MET A 429 SHEET 3 F 5 THR A 460 GLN A 468 1 O LEU A 462 N TRP A 382 SHEET 4 F 5 ILE A 508 THR A 514 -1 O TRP A 513 N LEU A 461 SHEET 5 F 5 ASP A 482 PRO A 485 -1 N ARG A 484 O LYS A 512 SHEET 1 G 2 TRP A 393 ASP A 394 0 SHEET 2 G 2 LYS A 422 TYR A 423 -1 O TYR A 423 N TRP A 393 SHEET 1 H 4 LEU A 453 GLU A 456 0 SHEET 2 H 4 ILE A 548 CYS A 554 1 O PRO A 550 N LEU A 453 SHEET 3 H 4 CYS A 528 SER A 534 -1 N TYR A 533 O GLY A 549 SHEET 4 H 4 TYR A 476 HIS A 478 -1 N HIS A 478 O TYR A 532 SHEET 1 I 4 ILE A 613 ILE A 617 0 SHEET 2 I 4 ASN A 572 ASP A 580 -1 N PHE A 579 O MET A 614 SHEET 3 I 4 VAL A 634 ILE A 642 1 O LEU A 640 N PHE A 576 SHEET 4 I 4 GLY A 675 SER A 681 -1 O GLU A 676 N ILE A 639 SHEET 1 J 2 LEU A 649 VAL A 651 0 SHEET 2 J 2 LEU A 668 LEU A 670 -1 O LEU A 670 N LEU A 649 SHEET 1 K 4 VAL B1733 GLU B1737 0 SHEET 2 K 4 THR B1695 GLU B1704 -1 N VAL B1703 O VAL B1734 SHEET 3 K 4 ASP B1769 ASN B1777 1 O ASN B1770 N ARG B1696 SHEET 4 K 4 THR B1812 VAL B1819 -1 O TYR B1815 N VAL B1773 SHEET 1 L 3 ILE B1763 ALA B1765 0 SHEET 2 L 3 ILE B1852 CYS B1858 1 O CYS B1858 N ALA B1765 SHEET 3 L 3 CYS B1832 PHE B1838 -1 N TRP B1835 O LEU B1855 SHEET 1 M 5 GLU B1875 LEU B1878 0 SHEET 2 M 5 ILE B1940 LEU B1945 1 O TYR B1943 N PHE B1876 SHEET 3 M 5 PHE B1983 MET B1988 -1 O VAL B1986 N TRP B1942 SHEET 4 M 5 PHE B1963 ARG B1966 -1 N THR B1964 O GLU B1987 SHEET 5 M 5 GLU B1970 MET B1973 -1 O MET B1973 N PHE B1963 SHEET 1 N 5 VAL B1933 ALA B1935 0 SHEET 2 N 5 THR B2012 TYR B2017 1 O TYR B2017 N MET B1934 SHEET 3 N 5 GLY B1994 CYS B2000 -1 N GLY B1994 O VAL B2016 SHEET 4 N 5 HIS B1954 PHE B1958 -1 N HIS B1957 O GLU B1999 SHEET 5 N 5 LEU B1975 LEU B1978 -1 O LEU B1978 N HIS B1954 SHEET 1 O 3 THR B2023 PRO B2024 0 SHEET 2 O 3 SER B2160 CYS B2169 -1 O GLY B2168 N THR B2023 SHEET 3 O 3 TRP B2062 THR B2064 -1 N TRP B2062 O LEU B2162 SHEET 1 P 6 THR B2023 PRO B2024 0 SHEET 2 P 6 SER B2160 CYS B2169 -1 O GLY B2168 N THR B2023 SHEET 3 P 6 ILE B2071 GLN B2087 -1 N GLY B2083 O MET B2167 SHEET 4 P 6 ASN B2138 TYR B2156 -1 O ILE B2144 N ILE B2081 SHEET 5 P 6 ILE B2098 SER B2106 -1 N SER B2099 O HIS B2155 SHEET 6 P 6 VAL B2125 PHE B2127 -1 O PHE B2126 N PHE B2101 SHEET 1 Q 2 ALA B2089 ARG B2090 0 SHEET 2 Q 2 SER B2095 LEU B2096 -1 O LEU B2096 N ALA B2089 SHEET 1 R 5 ILE B2190 ALA B2192 0 SHEET 2 R 5 LEU B2230 GLN B2246 -1 O GLN B2231 N THR B2191 SHEET 3 R 5 SER B2296 TRP B2313 -1 O LEU B2297 N THR B2241 SHEET 4 R 5 VAL B2257 SER B2265 -1 N LEU B2261 O HIS B2309 SHEET 5 R 5 PHE B2283 GLN B2284 -1 O PHE B2283 N PHE B2260 SHEET 1 S 5 THR B2272 LEU B2273 0 SHEET 2 S 5 VAL B2257 SER B2265 -1 N SER B2264 O THR B2272 SHEET 3 S 5 SER B2296 TRP B2313 -1 O HIS B2309 N LEU B2261 SHEET 4 S 5 LEU B2230 GLN B2246 -1 N THR B2241 O LEU B2297 SHEET 5 S 5 ARG B2320 CYS B2326 -1 O GLU B2322 N THR B2244 SHEET 1 T 2 VAL B2248 LYS B2249 0 SHEET 2 T 2 SER B2254 MET B2255 -1 O MET B2255 N VAL B2248 SSBOND 1 CYS A 153 CYS A 179 1555 1555 2.06 SSBOND 2 CYS A 248 CYS A 329 1555 1555 2.06 SSBOND 3 CYS A 528 CYS A 554 1555 1555 2.04 SSBOND 4 CYS A 630 CYS A 711 1555 1555 2.05 SSBOND 5 CYS B 1832 CYS B 1858 1555 1555 2.06 SSBOND 6 CYS B 1899 CYS B 1903 1555 1555 2.05 SSBOND 7 CYS B 2021 CYS B 2169 1555 1555 2.07 SSBOND 8 CYS B 2174 CYS B 2326 1555 1555 2.04 LINK ND2 ASN A 239 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B1810 C1 NAG B2401 1555 1555 1.54 LINK ND2 ASN B2118 C1 NAG B2402 1555 1555 1.25 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG D 1 C1 BMA D 2 1555 1555 1.46 LINK O3 BMA D 2 C1 MAN D 3 1555 1555 1.47 LINK O6 BMA D 2 C1 BMA D 4 1555 1555 1.45 LINK O LYS A 107 CA CA A 804 1555 1555 2.66 LINK O GLU A 122 CA CA A 804 1555 1555 2.64 LINK OD1 ASP A 125 CA CA A 804 1555 1555 2.77 LINK OD2 ASP A 126 CA CA A 804 1555 1555 2.73 LINK OD1 ASP A 126 CA CA A 804 1555 1555 2.96 LINK ND1 HIS A 267 CU CU A 803 1555 1555 2.05 LINK ND1 HIS B1954 CU CU B2407 1555 1555 2.01 LINK SG CYS B2000 CU CU B2407 1555 1555 2.11 LINK ND1 HIS B2005 CU CU B2407 1555 1555 2.22 CISPEP 1 LYS B 2020 CYS B 2021 0 12.02 CRYST1 81.000 71.000 100.000 67.00 60.00 65.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012346 -0.005757 -0.005970 0.00000 SCALE2 0.000000 0.015541 -0.003649 0.00000 SCALE3 0.000000 0.000000 0.011861 0.00000