PDB Short entry for 3K40 HEADER LYASE 05-OCT-09 3K40 TITLE CRYSTAL STRUCTURE OF DROSOPHILA 3,4-DIHYDROXYPHENYLALANINE TITLE 2 DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC-L-AMINO-ACID DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AADC, DOPA DECARBOXYLASE, DDC; COMPND 5 EC: 4.1.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG10697, DDC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB; SOURCE 11 OTHER_DETAILS: HYPODERM ISOFORM KEYWDS PLP DEPENDENT PROTEIN, ALPHA BETA PROTEIN, ALTERNATIVE SPLICING, KEYWDS 2 CATECHOLAMINE BIOSYNTHESIS, DECARBOXYLASE, LYASE, POLYMORPHISM, KEYWDS 3 PYRIDOXAL PHOSPHATE, CG10697-PB ISOFORM B EXPDTA X-RAY DIFFRACTION AUTHOR Q.HAN,H.DING,H.ROBINSON,B.M.CHRISTENSEN,J.LI REVDAT 3 22-NOV-23 3K40 1 REMARK REVDAT 2 06-SEP-23 3K40 1 REMARK LINK REVDAT 1 02-FEB-10 3K40 0 JRNL AUTH Q.HAN,H.DING,H.ROBINSON,B.M.CHRISTENSEN,J.LI JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF DROSOPHILA JRNL TITL 2 3,4-DIHYDROXYPHENYLALANINE DECARBOXYLASE JRNL REF PLOS ONE V. 5 E8826 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20098687 JRNL DOI 10.1371/JOURNAL.PONE.0008826 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 94557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 365 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 601 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7293 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9863 ; 1.423 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 892 ; 5.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 330 ;35.588 ;23.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1246 ;15.425 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1046 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5526 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4456 ; 0.904 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7132 ; 1.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2837 ; 2.444 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2731 ; 3.762 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLREP REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 20% GLYCEROL, 200 MM REMARK 280 CACL2, AND 100 MM CACODYLIC ACID, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.90450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.29850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.90450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.29850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 322 REMARK 465 ASN A 323 REMARK 465 ALA A 324 REMARK 465 PHE A 325 REMARK 465 ASN A 326 REMARK 465 VAL A 327 REMARK 465 ASP A 328 REMARK 465 PRO A 329 REMARK 465 LEU A 330 REMARK 465 TYR A 331 REMARK 465 LEU A 332 REMARK 465 LYS A 333 REMARK 465 HIS A 334 REMARK 465 ASP A 335 REMARK 465 MET A 336 REMARK 465 GLN A 337 REMARK 465 GLY A 338 REMARK 465 SER A 339 REMARK 465 ALA A 340 REMARK 465 PRO A 341 REMARK 465 ASP A 342 REMARK 465 TYR A 343 REMARK 465 ARG A 344 REMARK 465 HIS A 345 REMARK 465 TRP A 346 REMARK 465 GLN A 347 REMARK 465 ILE A 348 REMARK 465 VAL B 322 REMARK 465 ASN B 323 REMARK 465 ALA B 324 REMARK 465 PHE B 325 REMARK 465 ASN B 326 REMARK 465 VAL B 327 REMARK 465 ASP B 328 REMARK 465 PRO B 329 REMARK 465 LEU B 330 REMARK 465 TYR B 331 REMARK 465 LEU B 332 REMARK 465 LYS B 333 REMARK 465 HIS B 334 REMARK 465 ASP B 335 REMARK 465 MET B 336 REMARK 465 GLN B 337 REMARK 465 GLY B 338 REMARK 465 SER B 339 REMARK 465 ALA B 340 REMARK 465 PRO B 341 REMARK 465 ASP B 342 REMARK 465 TYR B 343 REMARK 465 ARG B 344 REMARK 465 HIS B 345 REMARK 465 TRP B 346 REMARK 465 GLN B 347 REMARK 465 ILE B 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 318 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LLP A 302 -75.80 -92.15 REMARK 500 MET A 403 -134.00 57.82 REMARK 500 LYS A 438 70.23 35.45 REMARK 500 GLU A 474 37.78 -86.74 REMARK 500 ILE B 106 102.35 -58.21 REMARK 500 ALA B 107 54.20 -97.72 REMARK 500 HIS B 171 59.17 -140.35 REMARK 500 PHE B 236 -14.56 -142.70 REMARK 500 LLP B 302 -75.94 -93.63 REMARK 500 CYS B 310 96.71 -161.77 REMARK 500 MET B 403 -133.90 54.26 REMARK 500 LYS B 438 75.54 38.87 REMARK 500 ASP B 439 16.17 53.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 476 DBREF 3K40 A 1 475 UNP P05031 DDC_DROME 36 510 DBREF 3K40 B 1 475 UNP P05031 DDC_DROME 36 510 SEQRES 1 A 475 MET GLU ALA PRO GLU PHE LYS ASP PHE ALA LYS THR MET SEQRES 2 A 475 VAL ASP PHE ILE ALA GLU TYR LEU GLU ASN ILE ARG GLU SEQRES 3 A 475 ARG ARG VAL LEU PRO GLU VAL LYS PRO GLY TYR LEU LYS SEQRES 4 A 475 PRO LEU ILE PRO ASP ALA ALA PRO GLU LYS PRO GLU LYS SEQRES 5 A 475 TRP GLN ASP VAL MET GLN ASP ILE GLU ARG VAL ILE MET SEQRES 6 A 475 PRO GLY VAL THR HIS TRP HIS SER PRO LYS PHE HIS ALA SEQRES 7 A 475 TYR PHE PRO THR ALA ASN SER TYR PRO ALA ILE VAL ALA SEQRES 8 A 475 ASP MET LEU SER GLY ALA ILE ALA CYS ILE GLY PHE THR SEQRES 9 A 475 TRP ILE ALA SER PRO ALA CYS THR GLU LEU GLU VAL VAL SEQRES 10 A 475 MET MET ASP TRP LEU GLY LYS MET LEU GLU LEU PRO ALA SEQRES 11 A 475 GLU PHE LEU ALA CYS SER GLY GLY LYS GLY GLY GLY VAL SEQRES 12 A 475 ILE GLN GLY THR ALA SER GLU SER THR LEU VAL ALA LEU SEQRES 13 A 475 LEU GLY ALA LYS ALA LYS LYS LEU LYS GLU VAL LYS GLU SEQRES 14 A 475 LEU HIS PRO GLU TRP ASP GLU HIS THR ILE LEU GLY LYS SEQRES 15 A 475 LEU VAL GLY TYR CYS SER ASP GLN ALA HIS SER SER VAL SEQRES 16 A 475 GLU ARG ALA GLY LEU LEU GLY GLY VAL LYS LEU ARG SER SEQRES 17 A 475 VAL GLN SER GLU ASN HIS ARG MET ARG GLY ALA ALA LEU SEQRES 18 A 475 GLU LYS ALA ILE GLU GLN ASP VAL ALA GLU GLY LEU ILE SEQRES 19 A 475 PRO PHE TYR ALA VAL VAL THR LEU GLY THR THR ASN SER SEQRES 20 A 475 CYS ALA PHE ASP TYR LEU ASP GLU CYS GLY PRO VAL GLY SEQRES 21 A 475 ASN LYS HIS ASN LEU TRP ILE HIS VAL ASP ALA ALA TYR SEQRES 22 A 475 ALA GLY SER ALA PHE ILE CYS PRO GLU TYR ARG HIS LEU SEQRES 23 A 475 MET LYS GLY ILE GLU SER ALA ASP SER PHE ASN PHE ASN SEQRES 24 A 475 PRO HIS LLP TRP MET LEU VAL ASN PHE ASP CYS SER ALA SEQRES 25 A 475 MET TRP LEU LYS ASP PRO SER TRP VAL VAL ASN ALA PHE SEQRES 26 A 475 ASN VAL ASP PRO LEU TYR LEU LYS HIS ASP MET GLN GLY SEQRES 27 A 475 SER ALA PRO ASP TYR ARG HIS TRP GLN ILE PRO LEU GLY SEQRES 28 A 475 ARG ARG PHE ARG ALA LEU LYS LEU TRP PHE VAL LEU ARG SEQRES 29 A 475 LEU TYR GLY VAL GLU ASN LEU GLN ALA HIS ILE ARG ARG SEQRES 30 A 475 HIS CYS ASN PHE ALA LYS GLN PHE GLY ASP LEU CYS VAL SEQRES 31 A 475 ALA ASP SER ARG PHE GLU LEU ALA ALA GLU ILE ASN MET SEQRES 32 A 475 GLY LEU VAL CYS PHE ARG LEU LYS GLY SER ASN GLU ARG SEQRES 33 A 475 ASN GLU ALA LEU LEU LYS ARG ILE ASN GLY ARG GLY HIS SEQRES 34 A 475 ILE HIS LEU VAL PRO ALA LYS ILE LYS ASP VAL TYR PHE SEQRES 35 A 475 LEU ARG MET ALA ILE CYS SER ARG PHE THR GLN SER GLU SEQRES 36 A 475 ASP MET GLU TYR SER TRP LYS GLU VAL SER ALA ALA ALA SEQRES 37 A 475 ASP GLU MET GLU GLN GLU GLN SEQRES 1 B 475 MET GLU ALA PRO GLU PHE LYS ASP PHE ALA LYS THR MET SEQRES 2 B 475 VAL ASP PHE ILE ALA GLU TYR LEU GLU ASN ILE ARG GLU SEQRES 3 B 475 ARG ARG VAL LEU PRO GLU VAL LYS PRO GLY TYR LEU LYS SEQRES 4 B 475 PRO LEU ILE PRO ASP ALA ALA PRO GLU LYS PRO GLU LYS SEQRES 5 B 475 TRP GLN ASP VAL MET GLN ASP ILE GLU ARG VAL ILE MET SEQRES 6 B 475 PRO GLY VAL THR HIS TRP HIS SER PRO LYS PHE HIS ALA SEQRES 7 B 475 TYR PHE PRO THR ALA ASN SER TYR PRO ALA ILE VAL ALA SEQRES 8 B 475 ASP MET LEU SER GLY ALA ILE ALA CYS ILE GLY PHE THR SEQRES 9 B 475 TRP ILE ALA SER PRO ALA CYS THR GLU LEU GLU VAL VAL SEQRES 10 B 475 MET MET ASP TRP LEU GLY LYS MET LEU GLU LEU PRO ALA SEQRES 11 B 475 GLU PHE LEU ALA CYS SER GLY GLY LYS GLY GLY GLY VAL SEQRES 12 B 475 ILE GLN GLY THR ALA SER GLU SER THR LEU VAL ALA LEU SEQRES 13 B 475 LEU GLY ALA LYS ALA LYS LYS LEU LYS GLU VAL LYS GLU SEQRES 14 B 475 LEU HIS PRO GLU TRP ASP GLU HIS THR ILE LEU GLY LYS SEQRES 15 B 475 LEU VAL GLY TYR CYS SER ASP GLN ALA HIS SER SER VAL SEQRES 16 B 475 GLU ARG ALA GLY LEU LEU GLY GLY VAL LYS LEU ARG SER SEQRES 17 B 475 VAL GLN SER GLU ASN HIS ARG MET ARG GLY ALA ALA LEU SEQRES 18 B 475 GLU LYS ALA ILE GLU GLN ASP VAL ALA GLU GLY LEU ILE SEQRES 19 B 475 PRO PHE TYR ALA VAL VAL THR LEU GLY THR THR ASN SER SEQRES 20 B 475 CYS ALA PHE ASP TYR LEU ASP GLU CYS GLY PRO VAL GLY SEQRES 21 B 475 ASN LYS HIS ASN LEU TRP ILE HIS VAL ASP ALA ALA TYR SEQRES 22 B 475 ALA GLY SER ALA PHE ILE CYS PRO GLU TYR ARG HIS LEU SEQRES 23 B 475 MET LYS GLY ILE GLU SER ALA ASP SER PHE ASN PHE ASN SEQRES 24 B 475 PRO HIS LLP TRP MET LEU VAL ASN PHE ASP CYS SER ALA SEQRES 25 B 475 MET TRP LEU LYS ASP PRO SER TRP VAL VAL ASN ALA PHE SEQRES 26 B 475 ASN VAL ASP PRO LEU TYR LEU LYS HIS ASP MET GLN GLY SEQRES 27 B 475 SER ALA PRO ASP TYR ARG HIS TRP GLN ILE PRO LEU GLY SEQRES 28 B 475 ARG ARG PHE ARG ALA LEU LYS LEU TRP PHE VAL LEU ARG SEQRES 29 B 475 LEU TYR GLY VAL GLU ASN LEU GLN ALA HIS ILE ARG ARG SEQRES 30 B 475 HIS CYS ASN PHE ALA LYS GLN PHE GLY ASP LEU CYS VAL SEQRES 31 B 475 ALA ASP SER ARG PHE GLU LEU ALA ALA GLU ILE ASN MET SEQRES 32 B 475 GLY LEU VAL CYS PHE ARG LEU LYS GLY SER ASN GLU ARG SEQRES 33 B 475 ASN GLU ALA LEU LEU LYS ARG ILE ASN GLY ARG GLY HIS SEQRES 34 B 475 ILE HIS LEU VAL PRO ALA LYS ILE LYS ASP VAL TYR PHE SEQRES 35 B 475 LEU ARG MET ALA ILE CYS SER ARG PHE THR GLN SER GLU SEQRES 36 B 475 ASP MET GLU TYR SER TRP LYS GLU VAL SER ALA ALA ALA SEQRES 37 B 475 ASP GLU MET GLU GLN GLU GLN MODRES 3K40 LLP A 302 LYS MODRES 3K40 LLP B 302 LYS HET LLP A 302 24 HET LLP B 302 24 HET GOL A 476 6 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *601(H2 O) HELIX 1 1 GLU A 2 ASN A 23 1 22 HELIX 2 2 ILE A 24 ARG A 27 5 4 HELIX 3 3 LEU A 38 ILE A 42 5 5 HELIX 4 4 LYS A 52 ILE A 64 1 13 HELIX 5 5 MET A 65 VAL A 68 5 4 HELIX 6 6 SER A 85 ALA A 99 1 15 HELIX 7 7 SER A 108 LEU A 126 1 19 HELIX 8 8 PRO A 129 GLY A 137 5 9 HELIX 9 9 THR A 147 HIS A 171 1 25 HELIX 10 10 ASP A 175 LYS A 182 1 8 HELIX 11 11 HIS A 192 GLY A 203 1 12 HELIX 12 12 ARG A 217 GLU A 231 1 15 HELIX 13 13 TYR A 252 HIS A 263 1 12 HELIX 14 14 TYR A 273 LYS A 288 5 16 HELIX 15 15 GLY A 289 ALA A 293 5 5 HELIX 16 16 ASN A 299 MET A 304 1 6 HELIX 17 17 ASP A 317 VAL A 321 5 5 HELIX 18 18 GLY A 351 PHE A 354 5 4 HELIX 19 19 ARG A 355 ASP A 392 1 38 HELIX 20 20 SER A 413 GLY A 428 1 16 HELIX 21 21 GLN A 453 GLN A 473 1 21 HELIX 22 22 GLU B 2 ASN B 23 1 22 HELIX 23 23 ILE B 24 ARG B 27 5 4 HELIX 24 24 LEU B 38 ILE B 42 5 5 HELIX 25 25 LYS B 52 ILE B 64 1 13 HELIX 26 26 MET B 65 VAL B 68 5 4 HELIX 27 27 SER B 85 ALA B 99 1 15 HELIX 28 28 SER B 108 LEU B 126 1 19 HELIX 29 29 PRO B 129 GLY B 137 5 9 HELIX 30 30 THR B 147 HIS B 171 1 25 HELIX 31 31 ASP B 175 GLY B 181 1 7 HELIX 32 32 HIS B 192 GLY B 203 1 12 HELIX 33 33 ARG B 217 ALA B 230 1 14 HELIX 34 34 TYR B 252 HIS B 263 1 12 HELIX 35 35 TYR B 273 LYS B 288 5 16 HELIX 36 36 GLY B 289 ALA B 293 5 5 HELIX 37 37 ASN B 299 MET B 304 1 6 HELIX 38 38 GLY B 351 PHE B 354 5 4 HELIX 39 39 ARG B 355 ALA B 391 1 37 HELIX 40 40 SER B 413 GLY B 428 1 16 HELIX 41 41 GLN B 453 GLN B 473 1 21 SHEET 1 A 7 GLY A 141 GLN A 145 0 SHEET 2 A 7 SER A 311 LEU A 315 -1 O SER A 311 N GLN A 145 SHEET 3 A 7 SER A 295 PHE A 298 -1 N PHE A 296 O TRP A 314 SHEET 4 A 7 TRP A 266 ASP A 270 1 N VAL A 269 O ASN A 297 SHEET 5 A 7 ILE A 234 THR A 241 1 N ALA A 238 O HIS A 268 SHEET 6 A 7 LEU A 183 SER A 188 1 N TYR A 186 O VAL A 239 SHEET 7 A 7 LYS A 205 VAL A 209 1 O LYS A 205 N GLY A 185 SHEET 1 B 4 PHE A 395 LEU A 397 0 SHEET 2 B 4 LEU A 405 LEU A 410 -1 O ARG A 409 N GLU A 396 SHEET 3 B 4 VAL A 440 ALA A 446 -1 O LEU A 443 N PHE A 408 SHEET 4 B 4 VAL A 433 ILE A 437 -1 N ALA A 435 O PHE A 442 SHEET 1 C 7 GLY B 141 GLN B 145 0 SHEET 2 C 7 SER B 311 LEU B 315 -1 O SER B 311 N GLN B 145 SHEET 3 C 7 SER B 295 PHE B 298 -1 N PHE B 296 O TRP B 314 SHEET 4 C 7 TRP B 266 ASP B 270 1 N VAL B 269 O SER B 295 SHEET 5 C 7 ILE B 234 THR B 241 1 N PHE B 236 O TRP B 266 SHEET 6 C 7 LEU B 183 SER B 188 1 N TYR B 186 O VAL B 239 SHEET 7 C 7 LYS B 205 VAL B 209 1 O ARG B 207 N GLY B 185 SHEET 1 D 4 PHE B 395 LEU B 397 0 SHEET 2 D 4 LEU B 405 LEU B 410 -1 O ARG B 409 N GLU B 396 SHEET 3 D 4 VAL B 440 ALA B 446 -1 O LEU B 443 N PHE B 408 SHEET 4 D 4 VAL B 433 ILE B 437 -1 N ALA B 435 O PHE B 442 LINK C HIS A 301 N LLP A 302 1555 1555 1.34 LINK C LLP A 302 N TRP A 303 1555 1555 1.32 LINK C HIS B 301 N LLP B 302 1555 1555 1.35 LINK C LLP B 302 N TRP B 303 1555 1555 1.32 CISPEP 1 PHE A 308 ASP A 309 0 -5.37 CISPEP 2 PHE B 308 ASP B 309 0 -7.94 SITE 1 AC1 6 MET A 1 GLU A 2 HOH A 781 TYR B 366 SITE 2 AC1 6 ASN B 370 HOH B 599 CRYST1 105.809 108.597 86.294 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011588 0.00000