PDB Short entry for 3K57
HEADER    TRANSFERASE/DNA                         06-OCT-09   3K57              
TITLE     CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DATP TERNARY COMPLEX    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE II;                                         
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: POL II;                                                     
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-                                                   
COMPND  10 D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3');         
COMPND  11 CHAIN: T;                                                            
COMPND  12 ENGINEERED: YES;                                                     
COMPND  13 MOL_ID: 3;                                                           
COMPND  14 MOLECULE: DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'); 
COMPND  15 CHAIN: P;                                                            
COMPND  16 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 83333;                                               
SOURCE   4 STRAIN: K-12;                                                        
SOURCE   5 GENE: B0060, DINA, JW0059, POLB;                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28 WITH PRESCISSION PROTEASE  
SOURCE  11 CLEAVAGE SITE;                                                       
SOURCE  12 MOL_ID: 2;                                                           
SOURCE  13 SYNTHETIC: YES;                                                      
SOURCE  14 OTHER_DETAILS: CHEMICAL SYNTHESIS;                                   
SOURCE  15 MOL_ID: 3;                                                           
SOURCE  16 SYNTHETIC: YES;                                                      
SOURCE  17 OTHER_DETAILS: CHEMICAL SYNTHESIS                                    
KEYWDS    PROTEIN-DNA COMPLEX, DNA DAMAGE, DNA REPAIR, DNA-BINDING, DNA-        
KEYWDS   2 DIRECTED DNA POLYMERASE, NUCLEOTIDYLTRANSFERASE, SOS RESPONSE,       
KEYWDS   3 TRANSFERASE, TRANSFERASE-DNA COMPLEX                                 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    W.YANG,F.WANG                                                         
REVDAT   5   06-SEP-23 3K57    1       REMARK                                   
REVDAT   4   13-OCT-21 3K57    1       REMARK DBREF  SEQADV LINK                
REVDAT   3   13-JUL-11 3K57    1       VERSN                                    
REVDAT   2   09-MAR-10 3K57    1       REMARK                                   
REVDAT   1   09-FEB-10 3K57    0                                                
JRNL        AUTH   F.WANG,W.YANG                                                
JRNL        TITL   STRUCTURAL INSIGHT INTO TRANSLESION SYNTHESIS BY DNA POL II  
JRNL        REF    CELL(CAMBRIDGE,MASS.)         V. 139  1279 2009              
JRNL        REFN                   ISSN 0092-8674                               
JRNL        PMID   20064374                                                     
JRNL        DOI    10.1016/J.CELL.2009.11.043                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.08 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : NULL                           
REMARK   3   NUMBER OF REFLECTIONS             : 53505                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.204                           
REMARK   3   FREE R VALUE                     : 0.216                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 1351                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.08                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.15                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2930                       
REMARK   3   BIN FREE R VALUE                    : 0.2810                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 4370                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 6343                                    
REMARK   3   NUCLEIC ACID ATOMS       : 609                                     
REMARK   3   HETEROGEN ATOMS          : 32                                      
REMARK   3   SOLVENT ATOMS            : 525                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.25                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.25                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.29                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.32                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.010                           
REMARK   3   BOND ANGLES            (DEGREES) : NULL                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 23.29                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.315                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : NULL                                                 
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3K57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000055560.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 12-OCT-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 95.0                               
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU                             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 57617                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.080                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 93.5                               
REMARK 200  DATA REDUNDANCY                : 2.400                              
REMARK 200  R MERGE                    (I) : 0.07000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 13.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.15                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 87.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.90                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.47800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.800                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1Q8I                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 51.31                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 20% PEGMME5000, 0.2 M        
REMARK 280  AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP,            
REMARK 280  TEMPERATURE 293K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       40.21250            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       62.87250            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       49.94400            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       62.87250            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       40.21250            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       49.94400            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 37560 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    -2                                                      
REMARK 465     GLY A   781                                                      
REMARK 465     LEU A   782                                                      
REMARK 465     PHE A   783                                                      
REMARK 465      DG T   801                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ASN A 262    CG   OD1  ND2                                       
REMARK 470     GLU A 294    CG   CD   OE1  OE2                                  
REMARK 470     ASN A 309    CB   CG   OD1  ND2                                  
REMARK 470      DT T 802    P    OP1  OP2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DT T 802   C3' -  C2' -  C1' ANGL. DEV. =  -5.7 DEGREES          
REMARK 500     DT T 802   O4' -  C1' -  N1  ANGL. DEV. =   4.0 DEGREES          
REMARK 500     DG T 814   C3' -  C2' -  C1' ANGL. DEV. =  -5.4 DEGREES          
REMARK 500     DG T 814   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500     DC T 815   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    THR A 121      -89.44   -110.62                                   
REMARK 500    PHE A 228      -72.54   -105.10                                   
REMARK 500    ASP A 413     -105.03    -94.61                                   
REMARK 500    SER A 422       62.70     39.40                                   
REMARK 500    THR A 546      -61.38     68.79                                   
REMARK 500    ARG A 725      169.50     72.85                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1001  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 419   OD2                                                    
REMARK 620 2 TYR A 420   O    84.7                                              
REMARK 620 3 ASP A 547   OD2  97.3  95.1                                        
REMARK 620 4 DTP A 914   O1A 103.7 171.2  86.2                                  
REMARK 620 5 DTP A 914   O1G  96.0  98.4 161.8  78.6                            
REMARK 620 6 DTP A 914   O1B 172.8  96.2  89.8  75.1  76.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1002  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 419   OD1                                                    
REMARK 620 2 ASP A 547   OD1  93.9                                              
REMARK 620 3 HOH A 814   O    93.8 169.6                                        
REMARK 620 4 HOH A 835   O   101.0  89.8  95.5                                  
REMARK 620 5 DTP A 914   O1A 104.5  85.3  86.0 154.3                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 914                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3K58   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DTTP TERNARY COMPLEX   
REMARK 900 RELATED ID: 3K59   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DCTP TERNARY COMPLEX   
REMARK 900 RELATED ID: 3K5A   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DGTP TERNARY COMPLEX   
REMARK 900 RELATED ID: 3K5L   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY  
REMARK 900 COMPLEX                                                              
REMARK 900 RELATED ID: 3K5M   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2)        
REMARK 900 TERNARY COMPLEX                                                      
REMARK 900 RELATED ID: 3K5N   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX         
REMARK 900 RELATED ID: 3K5O   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II                                   
DBREF  3K57 A    1   783  UNP    P21189   DPO2_ECOLI       1    783             
DBREF  3K57 T  801   818  PDB    3K57     3K57           801    818             
DBREF  3K57 P  901   913  PDB    3K57     3K57           901    913             
SEQADV 3K57 GLY A   -2  UNP  P21189              EXPRESSION TAG                 
SEQADV 3K57 PRO A   -1  UNP  P21189              EXPRESSION TAG                 
SEQADV 3K57 HIS A    0  UNP  P21189              EXPRESSION TAG                 
SEQADV 3K57 ASN A  335  UNP  P21189    ASP   335 ENGINEERED MUTATION            
SEQRES   1 A  786  GLY PRO HIS MET ALA GLN ALA GLY PHE ILE LEU THR ARG          
SEQRES   2 A  786  HIS TRP ARG ASP THR PRO GLN GLY THR GLU VAL SER PHE          
SEQRES   3 A  786  TRP LEU ALA THR ASP ASN GLY PRO LEU GLN VAL THR LEU          
SEQRES   4 A  786  ALA PRO GLN GLU SER VAL ALA PHE ILE PRO ALA ASP GLN          
SEQRES   5 A  786  VAL PRO ARG ALA GLN HIS ILE LEU GLN GLY GLU GLN GLY          
SEQRES   6 A  786  PHE ARG LEU THR PRO LEU ALA LEU LYS ASP PHE HIS ARG          
SEQRES   7 A  786  GLN PRO VAL TYR GLY LEU TYR CYS ARG ALA HIS ARG GLN          
SEQRES   8 A  786  LEU MET ASN TYR GLU LYS ARG LEU ARG GLU GLY GLY VAL          
SEQRES   9 A  786  THR VAL TYR GLU ALA ASP VAL ARG PRO PRO GLU ARG TYR          
SEQRES  10 A  786  LEU MET GLU ARG PHE ILE THR SER PRO VAL TRP VAL GLU          
SEQRES  11 A  786  GLY ASP MET HIS ASN GLY THR ILE VAL ASN ALA ARG LEU          
SEQRES  12 A  786  LYS PRO HIS PRO ASP TYR ARG PRO PRO LEU LYS TRP VAL          
SEQRES  13 A  786  SER ILE ASP ILE GLU THR THR ARG HIS GLY GLU LEU TYR          
SEQRES  14 A  786  CYS ILE GLY LEU GLU GLY CYS GLY GLN ARG ILE VAL TYR          
SEQRES  15 A  786  MET LEU GLY PRO GLU ASN GLY ASP ALA SER SER LEU ASP          
SEQRES  16 A  786  PHE GLU LEU GLU TYR VAL ALA SER ARG PRO GLN LEU LEU          
SEQRES  17 A  786  GLU LYS LEU ASN ALA TRP PHE ALA ASN TYR ASP PRO ASP          
SEQRES  18 A  786  VAL ILE ILE GLY TRP ASN VAL VAL GLN PHE ASP LEU ARG          
SEQRES  19 A  786  MET LEU GLN LYS HIS ALA GLU ARG TYR ARG LEU PRO LEU          
SEQRES  20 A  786  ARG LEU GLY ARG ASP ASN SER GLU LEU GLU TRP ARG GLU          
SEQRES  21 A  786  HIS GLY PHE LYS ASN GLY VAL PHE PHE ALA GLN ALA LYS          
SEQRES  22 A  786  GLY ARG LEU ILE ILE ASP GLY ILE GLU ALA LEU LYS SER          
SEQRES  23 A  786  ALA PHE TRP ASN PHE SER SER PHE SER LEU GLU THR VAL          
SEQRES  24 A  786  ALA GLN GLU LEU LEU GLY GLU GLY LYS SER ILE ASP ASN          
SEQRES  25 A  786  PRO TRP ASP ARG MET ASP GLU ILE ASP ARG ARG PHE ALA          
SEQRES  26 A  786  GLU ASP LYS PRO ALA LEU ALA THR TYR ASN LEU LYS ASN          
SEQRES  27 A  786  CYS GLU LEU VAL THR GLN ILE PHE HIS LYS THR GLU ILE          
SEQRES  28 A  786  MET PRO PHE LEU LEU GLU ARG ALA THR VAL ASN GLY LEU          
SEQRES  29 A  786  PRO VAL ASP ARG HIS GLY GLY SER VAL ALA ALA PHE GLY          
SEQRES  30 A  786  HIS LEU TYR PHE PRO ARG MET HIS ARG ALA GLY TYR VAL          
SEQRES  31 A  786  ALA PRO ASN LEU GLY GLU VAL PRO PRO HIS ALA SER PRO          
SEQRES  32 A  786  GLY GLY TYR VAL MET ASP SER ARG PRO GLY LEU TYR ASP          
SEQRES  33 A  786  SER VAL LEU VAL LEU ASP TYR LYS SER LEU TYR PRO SER          
SEQRES  34 A  786  ILE ILE ARG THR PHE LEU ILE ASP PRO VAL GLY LEU VAL          
SEQRES  35 A  786  GLU GLY MET ALA GLN PRO ASP PRO GLU HIS SER THR GLU          
SEQRES  36 A  786  GLY PHE LEU ASP ALA TRP PHE SER ARG GLU LYS HIS CYS          
SEQRES  37 A  786  LEU PRO GLU ILE VAL THR ASN ILE TRP HIS GLY ARG ASP          
SEQRES  38 A  786  GLU ALA LYS ARG GLN GLY ASN LYS PRO LEU SER GLN ALA          
SEQRES  39 A  786  LEU LYS ILE ILE MET ASN ALA PHE TYR GLY VAL LEU GLY          
SEQRES  40 A  786  THR THR ALA CYS ARG PHE PHE ASP PRO ARG LEU ALA SER          
SEQRES  41 A  786  SER ILE THR MET ARG GLY HIS GLN ILE MET ARG GLN THR          
SEQRES  42 A  786  LYS ALA LEU ILE GLU ALA GLN GLY TYR ASP VAL ILE TYR          
SEQRES  43 A  786  GLY ASP THR ASP SER THR PHE VAL TRP LEU LYS GLY ALA          
SEQRES  44 A  786  HIS SER GLU GLU GLU ALA ALA LYS ILE GLY ARG ALA LEU          
SEQRES  45 A  786  VAL GLN HIS VAL ASN ALA TRP TRP ALA GLU THR LEU GLN          
SEQRES  46 A  786  LYS GLN ARG LEU THR SER ALA LEU GLU LEU GLU TYR GLU          
SEQRES  47 A  786  THR HIS PHE CYS ARG PHE LEU MET PRO THR ILE ARG GLY          
SEQRES  48 A  786  ALA ASP THR GLY SER LYS LYS ARG TYR ALA GLY LEU ILE          
SEQRES  49 A  786  GLN GLU GLY ASP LYS GLN ARG MET VAL PHE LYS GLY LEU          
SEQRES  50 A  786  GLU THR VAL ARG THR ASP TRP THR PRO LEU ALA GLN GLN          
SEQRES  51 A  786  PHE GLN GLN GLU LEU TYR LEU ARG ILE PHE ARG ASN GLU          
SEQRES  52 A  786  PRO TYR GLN GLU TYR VAL ARG GLU THR ILE ASP LYS LEU          
SEQRES  53 A  786  MET ALA GLY GLU LEU ASP ALA ARG LEU VAL TYR ARG LYS          
SEQRES  54 A  786  ARG LEU ARG ARG PRO LEU SER GLU TYR GLN ARG ASN VAL          
SEQRES  55 A  786  PRO PRO HIS VAL ARG ALA ALA ARG LEU ALA ASP GLU GLU          
SEQRES  56 A  786  ASN GLN LYS ARG GLY ARG PRO LEU GLN TYR GLN ASN ARG          
SEQRES  57 A  786  GLY THR ILE LYS TYR VAL TRP THR THR ASN GLY PRO GLU          
SEQRES  58 A  786  PRO LEU ASP TYR GLN ARG SER PRO LEU ASP TYR GLU HIS          
SEQRES  59 A  786  TYR LEU THR ARG GLN LEU GLN PRO VAL ALA GLU GLY ILE          
SEQRES  60 A  786  LEU PRO PHE ILE GLU ASP ASN PHE ALA THR LEU MET THR          
SEQRES  61 A  786  GLY GLN LEU GLY LEU PHE                                      
SEQRES   1 T   18   DG  DT  DA  DT  DG  DT  DA  DC  DG  DC  DT  DA  DG          
SEQRES   2 T   18   DG  DC  DA  DC  DG                                          
SEQRES   1 P   13   DG  DT  DG  DC  DC  DT  DA  DG  DC  DG  DT  DA DOC          
MODRES 3K57 DOC P  913   DC  2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE             
HET    DOC  P 913      18                                                       
HET    DTP  A 914      30                                                       
HET     MG  A1001       1                                                       
HET     MG  A1002       1                                                       
HETNAM     DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE                           
HETNAM     DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE                                
HETNAM      MG MAGNESIUM ION                                                    
FORMUL   3  DOC    C9 H14 N3 O6 P                                               
FORMUL   4  DTP    C10 H16 N5 O12 P3                                            
FORMUL   5   MG    2(MG 2+)                                                     
FORMUL   7  HOH   *525(H2 O)                                                    
HELIX    1   1 GLN A   49  LEU A   57  1                                   9    
HELIX    2   2 ALA A   85  GLY A   99  1                                  15    
HELIX    3   3 ARG A  109  ARG A  118  1                                  10    
HELIX    4   4 SER A  200  ASP A  216  1                                  17    
HELIX    5   5 PHE A  228  TYR A  240  1                                  13    
HELIX    6   6 GLY A  277  ALA A  284  1                                   8    
HELIX    7   7 SER A  292  GLY A  302  1                                  11    
HELIX    8   8 ASN A  309  ASP A  324  1                                  16    
HELIX    9   9 ASP A  324  GLU A  347  1                                  24    
HELIX   10  10 GLU A  347  GLY A  360  1                                  14    
HELIX   11  11 GLY A  368  ALA A  384  1                                  17    
HELIX   12  12 SER A  422  LEU A  432  1                                  11    
HELIX   13  13 ASP A  434  GLN A  444  1                                  11    
HELIX   14  14 CYS A  465  GLN A  483  1                                  19    
HELIX   15  15 ASN A  485  VAL A  502  1                                  18    
HELIX   16  16 LEU A  503  THR A  505  5                                   3    
HELIX   17  17 ASP A  512  GLN A  537  1                                  26    
HELIX   18  18 SER A  558  LYS A  583  1                                  26    
HELIX   19  19 LEU A  634  ARG A  638  5                                   5    
HELIX   20  20 THR A  642  ARG A  658  1                                  17    
HELIX   21  21 TYR A  662  ALA A  675  1                                  14    
HELIX   22  22 LEU A  678  LEU A  682  5                                   5    
HELIX   23  23 SER A  693  TYR A  695  5                                   3    
HELIX   24  24 PRO A  700  ARG A  716  1                                  17    
HELIX   25  25 ASP A  741  GLN A  743  5                                   3    
HELIX   26  26 ASP A  748  GLN A  756  1                                   9    
HELIX   27  27 GLN A  756  LEU A  765  1                                  10    
HELIX   28  28 PRO A  766  GLU A  769  5                                   4    
HELIX   29  29 ASN A  771  LEU A  780  1                                  10    
SHEET    1   A 6 MET A   1  ARG A  13  0                                        
SHEET    2   A 6 GLU A  20  THR A  27 -1  O  TRP A  24   N  LEU A   8           
SHEET    3   A 6 GLY A  30  THR A  35 -1  O  LEU A  32   N  LEU A  25           
SHEET    4   A 6 THR A 134  PRO A 142  1  O  ILE A 135   N  THR A  35           
SHEET    5   A 6 PRO A 123  HIS A 131 -1  N  HIS A 131   O  THR A 134           
SHEET    6   A 6 MET A   1  ARG A  13 -1  N  GLY A   5   O  VAL A 124           
SHEET    1   B 3 SER A  41  PRO A  46  0                                        
SHEET    2   B 3 PRO A  77  CYS A  83 -1  O  LEU A  81   N  ALA A  43           
SHEET    3   B 3 PHE A  63  LYS A  71 -1  N  THR A  66   O  GLY A  80           
SHEET    1   C 6 GLU A 194  VAL A 198  0                                        
SHEET    2   C 6 GLN A 175  LEU A 181  1  N  VAL A 178   O  GLU A 196           
SHEET    3   C 6 LEU A 165  GLY A 172 -1  N  LEU A 170   O  ILE A 177           
SHEET    4   C 6 TRP A 152  THR A 159 -1  N  ASP A 156   O  GLY A 169           
SHEET    5   C 6 VAL A 219  GLY A 222  1  O  ILE A 221   N  VAL A 153           
SHEET    6   C 6 LEU A 273  ASP A 276  1  O  ILE A 275   N  ILE A 220           
SHEET    1   D 2 GLU A 254  GLU A 257  0                                        
SHEET    2   D 2 PHE A 265  GLN A 268 -1  O  GLN A 268   N  GLU A 254           
SHEET    1   E 4 GLY A 410  TYR A 412  0                                        
SHEET    2   E 4 ARG A 600  MET A 603 -1  O  PHE A 601   N  TYR A 412           
SHEET    3   E 4 TYR A 617  GLU A 623 -1  O  ALA A 618   N  LEU A 602           
SHEET    4   E 4 LYS A 626  LYS A 632 -1  O  LYS A 626   N  GLU A 623           
SHEET    1   F 4 ASP A 540  TYR A 543  0                                        
SHEET    2   F 4 SER A 548  TRP A 552 -1  O  PHE A 550   N  TYR A 543           
SHEET    3   F 4 VAL A 415  TYR A 420 -1  N  LEU A 416   O  VAL A 551           
SHEET    4   F 4 LEU A 592  PHE A 598 -1  O  PHE A 598   N  VAL A 415           
SHEET    1   G 2 SER A 450  GLU A 452  0                                        
SHEET    2   G 2 TRP A 458  SER A 460 -1  O  PHE A 459   N  THR A 451           
SHEET    1   H 3 TYR A 684  PRO A 691  0                                        
SHEET    2   H 3 ASN A 724  THR A 733 -1  O  GLY A 726   N  LEU A 688           
SHEET    3   H 3 GLY A 736  PRO A 739 -1  O  GLU A 738   N  VAL A 731           
LINK         O3'  DA P 912                 P   DOC P 913     1555   1555  1.60  
LINK         OD2 ASP A 419                MG    MG A1001     1555   1555  2.07  
LINK         OD1 ASP A 419                MG    MG A1002     1555   1555  2.28  
LINK         O   TYR A 420                MG    MG A1001     1555   1555  2.15  
LINK         OD2 ASP A 547                MG    MG A1001     1555   1555  2.02  
LINK         OD1 ASP A 547                MG    MG A1002     1555   1555  2.26  
LINK         O   HOH A 814                MG    MG A1002     1555   1555  2.41  
LINK         O   HOH A 835                MG    MG A1002     1555   1555  2.21  
LINK         O1A DTP A 914                MG    MG A1001     1555   1555  2.17  
LINK         O1G DTP A 914                MG    MG A1001     1555   1555  2.28  
LINK         O1B DTP A 914                MG    MG A1001     1555   1555  2.31  
LINK         O1A DTP A 914                MG    MG A1002     1555   1555  2.53  
CISPEP   1 GLY A  182    PRO A  183          0        -0.35                     
SITE     1 AC1 21 ASP A 419  TYR A 420  LYS A 421  SER A 422                    
SITE     2 AC1 21 LEU A 423  TYR A 424  ARG A 477  LYS A 493                    
SITE     3 AC1 21 ASN A 497  THR A 546  ASP A 547  HOH A 784                    
SITE     4 AC1 21 HOH A 808  HOH A 814  HOH A 837  HOH A 967                    
SITE     5 AC1 21  MG A1001   MG A1002  DOC P 913   DT T 804                    
SITE     6 AC1 21  DG T 805                                                     
SITE     1 AC2  5 ASP A 419  TYR A 420  ASP A 547  DTP A 914                    
SITE     2 AC2  5  MG A1002                                                     
SITE     1 AC3  7 ASP A 419  ASP A 547  HOH A 814  HOH A 835                    
SITE     2 AC3  7 DTP A 914   MG A1001  DOC P 913                               
CRYST1   80.425   99.888  125.745  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.012434  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010011  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007953        0.00000