PDB Short entry for 3K59 HEADER TRANSFERASE/DNA 06-OCT-09 3K59 TITLE CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DCTP TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL II; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*TP*AP*GP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0060, DINA, JW0059, POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28 WITH PRESCISSION PROTEASE SOURCE 11 CLEAVAGE SITE; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: CHEMICAL SYNTHESIS; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS PROTEIN-DNA COMPLEX, DNA DAMAGE, DNA REPAIR, DNA-BINDING, DNA- KEYWDS 2 DIRECTED DNA POLYMERASE, NUCLEOTIDYLTRANSFERASE, SOS RESPONSE, KEYWDS 3 TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.YANG,F.WANG REVDAT 5 06-SEP-23 3K59 1 REMARK REVDAT 4 13-OCT-21 3K59 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3K59 1 VERSN REVDAT 2 09-MAR-10 3K59 1 REMARK REVDAT 1 09-FEB-10 3K59 0 JRNL AUTH F.WANG,W.YANG JRNL TITL STRUCTURAL INSIGHT INTO TRANSLESION SYNTHESIS BY DNA POL II JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 1279 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 20064374 JRNL DOI 10.1016/J.CELL.2009.11.043 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 73914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THOUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1809 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6342 REMARK 3 NUCLEIC ACID ATOMS : 610 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.42 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.176 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3K57 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 20% PEGMME5000, 0.2 M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.36300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.32800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.36300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.32800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ILE A 307 REMARK 465 GLY A 781 REMARK 465 LEU A 782 REMARK 465 PHE A 783 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 309 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 802 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DT T 802 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 121 -80.67 -113.78 REMARK 500 PHE A 228 -77.43 -110.68 REMARK 500 ASN A 309 150.84 113.97 REMARK 500 ASP A 413 -106.74 -95.09 REMARK 500 THR A 546 -59.37 68.97 REMARK 500 ASP A 547 23.09 -141.12 REMARK 500 ARG A 725 162.84 77.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 419 OD2 REMARK 620 2 TYR A 420 O 84.2 REMARK 620 3 ASP A 547 OD2 92.8 82.8 REMARK 620 4 DCP A 914 O1G 89.6 95.2 176.8 REMARK 620 5 DCP A 914 O2A 100.4 170.6 88.7 93.1 REMARK 620 6 DCP A 914 O2B 177.0 95.2 90.1 87.6 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 419 OD1 REMARK 620 2 ASP A 547 OD1 99.4 REMARK 620 3 HOH A 873 O 89.2 164.0 REMARK 620 4 DCP A 914 O2A 106.5 79.5 85.1 REMARK 620 5 HOH A1169 O 102.8 95.5 95.8 150.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 914 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K57 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DATP TERNARY COMPLEX REMARK 900 RELATED ID: 3K58 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DTTP TERNARY COMPLEX REMARK 900 RELATED ID: 3K5A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-NORMAL DNA-DGTP TERNARY COMPLEX REMARK 900 RELATED ID: 3K5L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY REMARK 900 COMPLEX REMARK 900 RELATED ID: 3K5M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2) REMARK 900 TERNARY COMPLEX REMARK 900 RELATED ID: 3K5N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX REMARK 900 RELATED ID: 3K5O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI POL II DBREF 3K59 A 1 783 UNP P21189 DPO2_ECOLI 1 783 DBREF 3K59 T 802 818 PDB 3K59 3K59 802 818 DBREF 3K59 P 901 913 PDB 3K59 3K59 901 913 SEQADV 3K59 GLY A -2 UNP P21189 EXPRESSION TAG SEQADV 3K59 PRO A -1 UNP P21189 EXPRESSION TAG SEQADV 3K59 HIS A 0 UNP P21189 EXPRESSION TAG SEQADV 3K59 ASN A 335 UNP P21189 ASP 335 ENGINEERED MUTATION SEQRES 1 A 786 GLY PRO HIS MET ALA GLN ALA GLY PHE ILE LEU THR ARG SEQRES 2 A 786 HIS TRP ARG ASP THR PRO GLN GLY THR GLU VAL SER PHE SEQRES 3 A 786 TRP LEU ALA THR ASP ASN GLY PRO LEU GLN VAL THR LEU SEQRES 4 A 786 ALA PRO GLN GLU SER VAL ALA PHE ILE PRO ALA ASP GLN SEQRES 5 A 786 VAL PRO ARG ALA GLN HIS ILE LEU GLN GLY GLU GLN GLY SEQRES 6 A 786 PHE ARG LEU THR PRO LEU ALA LEU LYS ASP PHE HIS ARG SEQRES 7 A 786 GLN PRO VAL TYR GLY LEU TYR CYS ARG ALA HIS ARG GLN SEQRES 8 A 786 LEU MET ASN TYR GLU LYS ARG LEU ARG GLU GLY GLY VAL SEQRES 9 A 786 THR VAL TYR GLU ALA ASP VAL ARG PRO PRO GLU ARG TYR SEQRES 10 A 786 LEU MET GLU ARG PHE ILE THR SER PRO VAL TRP VAL GLU SEQRES 11 A 786 GLY ASP MET HIS ASN GLY THR ILE VAL ASN ALA ARG LEU SEQRES 12 A 786 LYS PRO HIS PRO ASP TYR ARG PRO PRO LEU LYS TRP VAL SEQRES 13 A 786 SER ILE ASP ILE GLU THR THR ARG HIS GLY GLU LEU TYR SEQRES 14 A 786 CYS ILE GLY LEU GLU GLY CYS GLY GLN ARG ILE VAL TYR SEQRES 15 A 786 MET LEU GLY PRO GLU ASN GLY ASP ALA SER SER LEU ASP SEQRES 16 A 786 PHE GLU LEU GLU TYR VAL ALA SER ARG PRO GLN LEU LEU SEQRES 17 A 786 GLU LYS LEU ASN ALA TRP PHE ALA ASN TYR ASP PRO ASP SEQRES 18 A 786 VAL ILE ILE GLY TRP ASN VAL VAL GLN PHE ASP LEU ARG SEQRES 19 A 786 MET LEU GLN LYS HIS ALA GLU ARG TYR ARG LEU PRO LEU SEQRES 20 A 786 ARG LEU GLY ARG ASP ASN SER GLU LEU GLU TRP ARG GLU SEQRES 21 A 786 HIS GLY PHE LYS ASN GLY VAL PHE PHE ALA GLN ALA LYS SEQRES 22 A 786 GLY ARG LEU ILE ILE ASP GLY ILE GLU ALA LEU LYS SER SEQRES 23 A 786 ALA PHE TRP ASN PHE SER SER PHE SER LEU GLU THR VAL SEQRES 24 A 786 ALA GLN GLU LEU LEU GLY GLU GLY LYS SER ILE ASP ASN SEQRES 25 A 786 PRO TRP ASP ARG MET ASP GLU ILE ASP ARG ARG PHE ALA SEQRES 26 A 786 GLU ASP LYS PRO ALA LEU ALA THR TYR ASN LEU LYS ASN SEQRES 27 A 786 CYS GLU LEU VAL THR GLN ILE PHE HIS LYS THR GLU ILE SEQRES 28 A 786 MET PRO PHE LEU LEU GLU ARG ALA THR VAL ASN GLY LEU SEQRES 29 A 786 PRO VAL ASP ARG HIS GLY GLY SER VAL ALA ALA PHE GLY SEQRES 30 A 786 HIS LEU TYR PHE PRO ARG MET HIS ARG ALA GLY TYR VAL SEQRES 31 A 786 ALA PRO ASN LEU GLY GLU VAL PRO PRO HIS ALA SER PRO SEQRES 32 A 786 GLY GLY TYR VAL MET ASP SER ARG PRO GLY LEU TYR ASP SEQRES 33 A 786 SER VAL LEU VAL LEU ASP TYR LYS SER LEU TYR PRO SER SEQRES 34 A 786 ILE ILE ARG THR PHE LEU ILE ASP PRO VAL GLY LEU VAL SEQRES 35 A 786 GLU GLY MET ALA GLN PRO ASP PRO GLU HIS SER THR GLU SEQRES 36 A 786 GLY PHE LEU ASP ALA TRP PHE SER ARG GLU LYS HIS CYS SEQRES 37 A 786 LEU PRO GLU ILE VAL THR ASN ILE TRP HIS GLY ARG ASP SEQRES 38 A 786 GLU ALA LYS ARG GLN GLY ASN LYS PRO LEU SER GLN ALA SEQRES 39 A 786 LEU LYS ILE ILE MET ASN ALA PHE TYR GLY VAL LEU GLY SEQRES 40 A 786 THR THR ALA CYS ARG PHE PHE ASP PRO ARG LEU ALA SER SEQRES 41 A 786 SER ILE THR MET ARG GLY HIS GLN ILE MET ARG GLN THR SEQRES 42 A 786 LYS ALA LEU ILE GLU ALA GLN GLY TYR ASP VAL ILE TYR SEQRES 43 A 786 GLY ASP THR ASP SER THR PHE VAL TRP LEU LYS GLY ALA SEQRES 44 A 786 HIS SER GLU GLU GLU ALA ALA LYS ILE GLY ARG ALA LEU SEQRES 45 A 786 VAL GLN HIS VAL ASN ALA TRP TRP ALA GLU THR LEU GLN SEQRES 46 A 786 LYS GLN ARG LEU THR SER ALA LEU GLU LEU GLU TYR GLU SEQRES 47 A 786 THR HIS PHE CYS ARG PHE LEU MET PRO THR ILE ARG GLY SEQRES 48 A 786 ALA ASP THR GLY SER LYS LYS ARG TYR ALA GLY LEU ILE SEQRES 49 A 786 GLN GLU GLY ASP LYS GLN ARG MET VAL PHE LYS GLY LEU SEQRES 50 A 786 GLU THR VAL ARG THR ASP TRP THR PRO LEU ALA GLN GLN SEQRES 51 A 786 PHE GLN GLN GLU LEU TYR LEU ARG ILE PHE ARG ASN GLU SEQRES 52 A 786 PRO TYR GLN GLU TYR VAL ARG GLU THR ILE ASP LYS LEU SEQRES 53 A 786 MET ALA GLY GLU LEU ASP ALA ARG LEU VAL TYR ARG LYS SEQRES 54 A 786 ARG LEU ARG ARG PRO LEU SER GLU TYR GLN ARG ASN VAL SEQRES 55 A 786 PRO PRO HIS VAL ARG ALA ALA ARG LEU ALA ASP GLU GLU SEQRES 56 A 786 ASN GLN LYS ARG GLY ARG PRO LEU GLN TYR GLN ASN ARG SEQRES 57 A 786 GLY THR ILE LYS TYR VAL TRP THR THR ASN GLY PRO GLU SEQRES 58 A 786 PRO LEU ASP TYR GLN ARG SER PRO LEU ASP TYR GLU HIS SEQRES 59 A 786 TYR LEU THR ARG GLN LEU GLN PRO VAL ALA GLU GLY ILE SEQRES 60 A 786 LEU PRO PHE ILE GLU ASP ASN PHE ALA THR LEU MET THR SEQRES 61 A 786 GLY GLN LEU GLY LEU PHE SEQRES 1 T 17 DT DA DG DG DT DA DC DG DC DT DA DG DG SEQRES 2 T 17 DC DA DC DA SEQRES 1 P 13 DG DT DG DC DC DT DA DG DC DG DT DA DOC MODRES 3K59 DOC P 913 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 913 18 HET DCP A 914 28 HET MG A1001 1 HET MG A1002 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *525(H2 O) HELIX 1 1 GLN A 49 LEU A 57 1 9 HELIX 2 2 ALA A 85 GLY A 99 1 15 HELIX 3 3 ARG A 109 ARG A 118 1 10 HELIX 4 4 SER A 200 ASP A 216 1 17 HELIX 5 5 PHE A 228 ARG A 241 1 14 HELIX 6 6 GLY A 277 ALA A 284 1 8 HELIX 7 7 SER A 292 GLY A 302 1 11 HELIX 8 8 ASN A 309 ASP A 324 1 16 HELIX 9 9 ASP A 324 GLU A 347 1 24 HELIX 10 10 GLU A 347 GLY A 360 1 14 HELIX 11 11 GLY A 368 ALA A 384 1 17 HELIX 12 12 SER A 422 LEU A 432 1 11 HELIX 13 13 ASP A 434 GLN A 444 1 11 HELIX 14 14 CYS A 465 GLN A 483 1 19 HELIX 15 15 ASN A 485 VAL A 502 1 18 HELIX 16 16 LEU A 503 THR A 505 5 3 HELIX 17 17 ASP A 512 GLN A 537 1 26 HELIX 18 18 SER A 558 LYS A 583 1 26 HELIX 19 19 LEU A 634 ARG A 638 5 5 HELIX 20 20 THR A 642 ARG A 658 1 17 HELIX 21 21 TYR A 662 ALA A 675 1 14 HELIX 22 22 LEU A 678 LEU A 682 5 5 HELIX 23 23 PRO A 691 TYR A 695 5 5 HELIX 24 24 PRO A 700 ARG A 716 1 17 HELIX 25 25 ASP A 741 GLN A 743 5 3 HELIX 26 26 ASP A 748 GLN A 756 1 9 HELIX 27 27 GLN A 756 GLY A 763 1 8 HELIX 28 28 ILE A 764 GLU A 769 5 6 HELIX 29 29 ASN A 771 LEU A 780 1 10 SHEET 1 A 6 HIS A 0 THR A 15 0 SHEET 2 A 6 GLY A 18 THR A 27 -1 O TRP A 24 N LEU A 8 SHEET 3 A 6 GLY A 30 THR A 35 -1 O VAL A 34 N PHE A 23 SHEET 4 A 6 THR A 134 PRO A 142 1 O ILE A 135 N THR A 35 SHEET 5 A 6 PRO A 123 HIS A 131 -1 N HIS A 131 O THR A 134 SHEET 6 A 6 HIS A 0 THR A 15 -1 N GLY A 5 O VAL A 124 SHEET 1 B 3 SER A 41 PRO A 46 0 SHEET 2 B 3 PRO A 77 CYS A 83 -1 O LEU A 81 N ALA A 43 SHEET 3 B 3 PHE A 63 LYS A 71 -1 N THR A 66 O GLY A 80 SHEET 1 C 6 GLU A 194 VAL A 198 0 SHEET 2 C 6 GLN A 175 LEU A 181 1 N MET A 180 O GLU A 196 SHEET 3 C 6 LEU A 165 GLY A 172 -1 N LEU A 170 O ILE A 177 SHEET 4 C 6 TRP A 152 THR A 159 -1 N ASP A 156 O GLY A 169 SHEET 5 C 6 VAL A 219 GLY A 222 1 O ILE A 221 N VAL A 153 SHEET 6 C 6 LEU A 273 ASP A 276 1 O LEU A 273 N ILE A 220 SHEET 1 D 2 GLU A 254 GLU A 257 0 SHEET 2 D 2 PHE A 265 GLN A 268 -1 O PHE A 266 N ARG A 256 SHEET 1 E 4 GLY A 410 TYR A 412 0 SHEET 2 E 4 ARG A 600 MET A 603 -1 O PHE A 601 N TYR A 412 SHEET 3 E 4 TYR A 617 GLU A 623 -1 O ALA A 618 N LEU A 602 SHEET 4 E 4 LYS A 626 LYS A 632 -1 O LYS A 626 N GLU A 623 SHEET 1 F 4 ASP A 540 TYR A 543 0 SHEET 2 F 4 SER A 548 TRP A 552 -1 O PHE A 550 N TYR A 543 SHEET 3 F 4 VAL A 415 TYR A 420 -1 N LEU A 416 O VAL A 551 SHEET 4 F 4 LEU A 592 PHE A 598 -1 O PHE A 598 N VAL A 415 SHEET 1 G 2 SER A 450 GLU A 452 0 SHEET 2 G 2 TRP A 458 SER A 460 -1 O PHE A 459 N THR A 451 SHEET 1 H 3 TYR A 684 LEU A 688 0 SHEET 2 H 3 GLY A 726 THR A 733 -1 O GLY A 726 N LEU A 688 SHEET 3 H 3 GLY A 736 PRO A 739 -1 O GLU A 738 N VAL A 731 LINK O3' DA P 912 P DOC P 913 1555 1555 1.60 LINK OD2 ASP A 419 MG MG A1001 1555 1555 2.13 LINK OD1 ASP A 419 MG MG A1002 1555 1555 2.32 LINK O TYR A 420 MG MG A1001 1555 1555 2.18 LINK OD2 ASP A 547 MG MG A1001 1555 1555 2.11 LINK OD1 ASP A 547 MG MG A1002 1555 1555 2.33 LINK O HOH A 873 MG MG A1002 1555 1555 2.37 LINK O1G DCP A 914 MG MG A1001 1555 1555 2.25 LINK O2A DCP A 914 MG MG A1001 1555 1555 2.27 LINK O2B DCP A 914 MG MG A1001 1555 1555 2.33 LINK O2A DCP A 914 MG MG A1002 1555 1555 2.28 LINK MG MG A1002 O HOH A1169 1555 1555 2.36 CISPEP 1 GLY A 182 PRO A 183 0 0.29 SITE 1 AC1 25 ASP A 419 TYR A 420 LYS A 421 SER A 422 SITE 2 AC1 25 LEU A 423 TYR A 424 ARG A 477 LYS A 493 SITE 3 AC1 25 ASN A 497 TYR A 500 THR A 546 ASP A 547 SITE 4 AC1 25 HOH A 787 HOH A 794 HOH A 798 HOH A 853 SITE 5 AC1 25 HOH A 863 HOH A 873 HOH A 891 MG A1001 SITE 6 AC1 25 MG A1002 HOH A1168 DOC P 913 DG T 804 SITE 7 AC1 25 DG T 805 SITE 1 AC2 5 ASP A 419 TYR A 420 ASP A 547 DCP A 914 SITE 2 AC2 5 MG A1002 SITE 1 AC3 7 ASP A 419 ASP A 547 HOH A 873 DCP A 914 SITE 2 AC3 7 MG A1001 HOH A1169 DOC P 913 CRYST1 80.726 100.656 126.030 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007935 0.00000