PDB Short entry for 3K8Y HEADER ONCOPROTEIN 15-OCT-09 3K8Y TITLE ALLOSTERIC MODULATION OF H-RAS GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS PROTEIN-NUCLEOTIDE COMPLEX, ACETYLATION, CELL MEMBRANE, DISEASE KEYWDS 2 MUTATION, GOLGI APPARATUS, GTP-BINDING, LIPOPROTEIN, MEMBRANE, KEYWDS 3 METHYLATION, NUCLEOTIDE-BINDING, PALMITATE, PRENYLATION, PROTO- KEYWDS 4 ONCOGENE, S-NITROSYLATION, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HOLZAPFEL,G.BUHRMAN,C.MATTOS REVDAT 4 06-SEP-23 3K8Y 1 REMARK LINK REVDAT 3 01-NOV-17 3K8Y 1 REMARK REVDAT 2 12-MAY-10 3K8Y 1 JRNL REVDAT 1 02-MAR-10 3K8Y 0 JRNL AUTH G.BUHRMAN,G.HOLZAPFEL,S.FETICS,C.MATTOS JRNL TITL ALLOSTERIC MODULATION OF RAS POSITIONS Q61 FOR A DIRECT ROLE JRNL TITL 2 IN CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 4931 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20194776 JRNL DOI 10.1073/PNAS.0912226107 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_6 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 46632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9920 - 2.8700 0.78 3534 118 0.2270 0.2670 REMARK 3 2 2.8700 - 2.2870 1.00 4432 150 0.1810 0.2010 REMARK 3 3 2.2870 - 2.0010 1.00 4383 146 0.1650 0.1740 REMARK 3 4 2.0010 - 1.8190 0.99 4364 147 0.1630 0.1870 REMARK 3 5 1.8190 - 1.6890 0.98 4290 142 0.1710 0.1850 REMARK 3 6 1.6890 - 1.5900 0.98 4269 144 0.1760 0.2330 REMARK 3 7 1.5900 - 1.5110 0.96 4206 142 0.1820 0.2140 REMARK 3 8 1.5110 - 1.4450 0.95 4115 134 0.2110 0.2690 REMARK 3 9 1.4450 - 1.3900 0.92 4017 126 0.2300 0.2800 REMARK 3 10 1.3900 - 1.3420 0.88 3819 126 0.2560 0.2760 REMARK 3 11 1.3420 - 1.3000 0.85 3699 129 0.2860 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.51 REMARK 3 B_SOL : 60.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.800 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32800 REMARK 3 B22 (A**2) : -1.32800 REMARK 3 B33 (A**2) : 2.65700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1379 REMARK 3 ANGLE : 1.056 1869 REMARK 3 CHIRALITY : 0.061 207 REMARK 3 PLANARITY : 0.003 241 REMARK 3 DIHEDRAL : 18.532 509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 20% PEG 3350, REMARK 280 0.05% N-OCTYL-B-D-GLUCOPYRANOSIDE, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.23750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.54053 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.96867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.23750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.54053 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.96867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.23750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.54053 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.96867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.23750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.54053 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.96867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.23750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.54053 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.96867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.23750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.54053 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.96867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.08107 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.93733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.08107 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.93733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.08107 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.93733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.08107 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.93733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.08107 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.93733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.08107 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.93733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 170 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 250 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 251 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 289 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 244 O HOH A 244 16453 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -70.24 -90.35 REMARK 500 ARG A 149 -6.25 81.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 81.8 REMARK 620 3 HOH A 172 O 89.1 88.2 REMARK 620 4 HOH A 173 O 85.8 90.2 174.8 REMARK 620 5 GNP A 528 O2G 171.4 90.1 93.5 91.4 REMARK 620 6 GNP A 528 O2B 92.2 173.6 89.5 91.7 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 81.1 REMARK 620 3 HOH A 200 O 88.2 88.1 REMARK 620 4 HOH A 233 O 158.9 78.0 93.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 169 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 O REMARK 620 2 TYR A 137 O 149.8 REMARK 620 3 HOH A 232 O 107.8 91.9 REMARK 620 4 HOH A 366 O 81.1 75.0 93.0 REMARK 620 5 HOH A 392 O 80.1 77.3 167.8 78.8 REMARK 620 6 ACT A 719 O 72.3 137.3 70.3 141.6 121.6 REMARK 620 7 ACT A 719 OXT 93.9 104.5 101.8 165.2 86.6 46.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 170 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 178 O REMARK 620 2 HOH A 182 O 87.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 719 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RGE RELATED DB: PDB REMARK 900 H-RAS GPPNHP CRYSTALLIZED IN 200 MM CALCIUM CHLORIDE REMARK 900 RELATED ID: 3K9N RELATED DB: PDB REMARK 900 Y32F RAS GPPNHP MUTANT REMARK 900 RELATED ID: 3K9L RELATED DB: PDB REMARK 900 Y32F RAS GPPNHP IN A DIFFERENT SPACE GROUP DBREF 3K8Y A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP A 528 32 HET CA A 167 1 HET MG A 168 1 HET CA A 169 1 HET MG A 170 1 HET ACT A 719 4 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 CA 2(CA 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *184(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ALA A 66 5 6 HELIX 3 3 MET A 67 GLY A 75 1 9 HELIX 4 4 ASN A 86 ASP A 105 1 20 HELIX 5 5 GLU A 126 GLY A 138 1 13 HELIX 6 6 GLY A 151 ARG A 164 1 14 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O ILE A 55 N TYR A 40 SHEET 3 A 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 168 1555 1555 2.14 LINK O PHE A 28 CA CA A 167 1555 1555 2.35 LINK OD1 ASP A 30 CA CA A 167 1555 1555 2.45 LINK OG1 THR A 35 MG MG A 168 1555 1555 2.16 LINK O ASP A 107 CA CA A 169 1555 1555 2.44 LINK O TYR A 137 CA CA A 169 1555 1555 2.50 LINK CA CA A 167 O HOH A 200 1555 1555 2.50 LINK CA CA A 167 O HOH A 233 1555 1555 2.58 LINK MG MG A 168 O HOH A 172 1555 1555 2.16 LINK MG MG A 168 O HOH A 173 1555 1555 2.15 LINK MG MG A 168 O2G GNP A 528 1555 1555 2.03 LINK MG MG A 168 O2B GNP A 528 1555 1555 2.10 LINK CA CA A 169 O HOH A 232 1555 1555 2.57 LINK CA CA A 169 O HOH A 366 1555 1555 2.82 LINK CA CA A 169 O HOH A 392 1555 1555 2.64 LINK CA CA A 169 O ACT A 719 1555 1555 2.71 LINK CA CA A 169 OXT ACT A 719 1555 1555 2.65 LINK MG MG A 170 O HOH A 178 1555 1555 2.17 LINK MG MG A 170 O HOH A 182 1555 1555 2.13 SITE 1 AC1 31 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 31 VAL A 29 ASP A 30 GLU A 31 PRO A 34 SITE 4 AC1 31 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC1 31 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC1 31 LYS A 147 MG A 168 HOH A 171 HOH A 172 SITE 7 AC1 31 HOH A 173 HOH A 175 HOH A 184 HOH A 189 SITE 8 AC1 31 HOH A 198 HOH A 209 HOH A 288 SITE 1 AC2 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC2 6 HOH A 200 HOH A 233 SITE 1 AC3 5 SER A 17 THR A 35 HOH A 172 HOH A 173 SITE 2 AC3 5 GNP A 528 SITE 1 AC4 6 ASP A 107 TYR A 137 HOH A 232 HOH A 366 SITE 2 AC4 6 HOH A 392 ACT A 719 SITE 1 AC5 2 HOH A 178 HOH A 182 SITE 1 AC6 8 ARG A 97 LYS A 101 ASP A 107 ASP A 108 SITE 2 AC6 8 VAL A 109 MET A 111 CA A 169 HOH A 232 CRYST1 88.475 88.475 134.906 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011303 0.006526 0.000000 0.00000 SCALE2 0.000000 0.013051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007413 0.00000