PDB Short entry for 3KFO HEADER PROTEIN TRANSPORT 27-OCT-09 3KFO TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN FROM THE NUCLEAR PORE TITLE 2 COMPLEX COMPONENT NUP133 FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP133; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 881-1157; COMPND 5 SYNONYM: NUCLEAR PORE PROTEIN NUP133; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NUP133, RAT3, YKR082W, YKR402; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC); MODIFIED PET26B KEYWDS NUCLEAR PORE COMPLEX, NUP133, YEAST, PROTEOLYSIS, STRUCTURAL KEYWDS 2 GENOMICS, PSI2, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL KEYWDS 3 GENOMIX RESEARCH CONSORTIUM, NYSGXRC, MEMBRANE, MRNA TRANSPORT, KEYWDS 4 NUCLEUS, PHOSPHOPROTEIN, PROTEIN TRANSPORT, TRANSLOCATION, KEYWDS 5 TRANSPORT, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,J.B.BONANNO,S.MILLER,K.BAIN,M.DICKEY,T.GHEYI,S.C.ALMO, AUTHOR 2 M.ROUT,A.SALI,J.PHILLIPS,U.PIEPER,J.FERNANDEZ-MARTINEZ,J.D.FRANKE, AUTHOR 3 S.ATWELL,D.A.THOMPSON,J.S.EMTAGE,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY, AUTHOR 4 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 10-FEB-21 3KFO 1 AUTHOR JRNL REVDAT 6 29-JUL-20 3KFO 1 AUTHOR REMARK LINK REVDAT 5 21-NOV-18 3KFO 1 AUTHOR REVDAT 4 01-NOV-17 3KFO 1 REMARK REVDAT 3 22-JUN-11 3KFO 1 JRNL REVDAT 2 16-MAR-11 3KFO 1 JRNL REVDAT 1 26-JAN-10 3KFO 0 JRNL AUTH P.SAMPATHKUMAR,T.GHEYI,S.A.MILLER,K.T.BAIN,M.DICKEY, JRNL AUTH 2 J.B.BONANNO,S.J.KIM,J.PHILLIPS,U.PIEPER, JRNL AUTH 3 J.FERNANDEZ-MARTINEZ,J.D.FRANKE,A.MARTEL,H.TSURUTA,S.ATWELL, JRNL AUTH 4 D.A.THOMPSON,J.S.EMTAGE,S.R.WASSERMAN,M.P.ROUT,A.SALI, JRNL AUTH 5 J.M.SAUDER,S.K.BURLEY JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF SACCHAROMYCES JRNL TITL 2 CEREVISIAE NUP133, A COMPONENT OF THE NUCLEAR PORE COMPLEX. JRNL REF PROTEINS V. 79 1672 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21365675 JRNL DOI 10.1002/PROT.22973 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1669 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1731 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1135 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2360 ; 1.635 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2802 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 5.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.694 ;25.610 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;13.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1931 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 325 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1207 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 920 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 889 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.280 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 1.282 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 431 ; 0.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1759 ; 1.991 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 689 ; 3.172 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 595 ; 4.728 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM POTASSIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.71650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.33700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.33900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.33700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.71650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.33900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 878 REMARK 465 SER A 879 REMARK 465 LEU A 880 REMARK 465 LYS A 881 REMARK 465 TYR A 882 REMARK 465 GLY A 883 REMARK 465 HIS A 884 REMARK 465 VAL A 885 REMARK 465 ALA A 886 REMARK 465 TRP A 887 REMARK 465 ILE A 888 REMARK 465 GLN A 889 REMARK 465 GLN A 890 REMARK 465 ILE A 891 REMARK 465 LEU A 892 REMARK 465 ASP A 893 REMARK 465 GLY A 894 REMARK 465 SER A 895 REMARK 465 TYR A 896 REMARK 465 ALA A 897 REMARK 465 ASP A 898 REMARK 465 ALA A 899 REMARK 465 MSE A 900 REMARK 465 ASN A 901 REMARK 465 THR A 902 REMARK 465 LEU A 903 REMARK 465 LYS A 904 REMARK 465 ASN A 905 REMARK 465 ILE A 906 REMARK 465 THR A 907 REMARK 465 VAL A 908 REMARK 465 ASP A 909 REMARK 465 ASP A 910 REMARK 465 SER A 911 REMARK 465 LYS A 912 REMARK 465 LYS A 913 REMARK 465 GLY A 914 REMARK 465 GLU A 915 REMARK 465 SER A 916 REMARK 465 LEU A 917 REMARK 465 SER A 918 REMARK 465 GLU A 919 REMARK 465 CYS A 920 REMARK 465 GLU A 921 REMARK 465 LEU A 922 REMARK 465 HIS A 923 REMARK 465 LEU A 924 REMARK 465 ASN A 925 REMARK 465 VAL A 926 REMARK 465 ALA A 927 REMARK 465 LYS A 928 REMARK 465 LEU A 929 REMARK 465 SER A 930 REMARK 465 SER A 931 REMARK 465 LEU A 932 REMARK 465 LEU A 933 REMARK 465 VAL A 934 REMARK 465 GLU A 935 REMARK 465 LYS A 936 REMARK 465 ASP A 937 REMARK 465 ASN A 938 REMARK 465 LEU A 939 REMARK 465 ASP A 940 REMARK 465 ILE A 941 REMARK 465 ASN A 942 REMARK 465 THR A 943 REMARK 465 LEU A 944 REMARK 465 ARG A 945 REMARK 465 GLY A 1159 REMARK 465 HIS A 1160 REMARK 465 HIS A 1161 REMARK 465 HIS A 1162 REMARK 465 HIS A 1163 REMARK 465 HIS A 1164 REMARK 465 HIS A 1165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 958 CG CD CE NZ REMARK 470 LYS A 966 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 LYS A 976 CG CD CE NZ REMARK 470 GLU A1032 CG CD OE1 OE2 REMARK 470 GLU A1053 CG CD OE1 OE2 REMARK 470 LYS A1063 CG CD CE NZ REMARK 470 LYS A1072 CG CD CE NZ REMARK 470 ASN A1073 CG OD1 ND2 REMARK 470 LEU A1083 CG CD1 CD2 REMARK 470 GLU A1093 CG CD OE1 OE2 REMARK 470 GLU A1097 CG CD OE1 OE2 REMARK 470 ASP A1126 CG OD1 OD2 REMARK 470 LYS A1144 CG CD CE NZ REMARK 470 TYR A1150 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1151 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 974 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 974 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1153 67.47 30.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-15133A RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL RESIDUES ARE NOT DEFINED THE ELECTRON DENSITY DUE TO IN- REMARK 999 CELL PROTEOLYSIS OF THE ORIGINALLY DESIGNED CONSTRUCT. DBREF 3KFO A 881 1157 UNP P36161 NU133_YEAST 881 1157 SEQADV 3KFO MSE A 878 UNP P36161 EXPRESSION TAG SEQADV 3KFO SER A 879 UNP P36161 EXPRESSION TAG SEQADV 3KFO LEU A 880 UNP P36161 EXPRESSION TAG SEQADV 3KFO GLU A 1158 UNP P36161 EXPRESSION TAG SEQADV 3KFO GLY A 1159 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1160 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1161 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1162 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1163 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1164 UNP P36161 EXPRESSION TAG SEQADV 3KFO HIS A 1165 UNP P36161 EXPRESSION TAG SEQRES 1 A 288 MSE SER LEU LYS TYR GLY HIS VAL ALA TRP ILE GLN GLN SEQRES 2 A 288 ILE LEU ASP GLY SER TYR ALA ASP ALA MSE ASN THR LEU SEQRES 3 A 288 LYS ASN ILE THR VAL ASP ASP SER LYS LYS GLY GLU SER SEQRES 4 A 288 LEU SER GLU CYS GLU LEU HIS LEU ASN VAL ALA LYS LEU SEQRES 5 A 288 SER SER LEU LEU VAL GLU LYS ASP ASN LEU ASP ILE ASN SEQRES 6 A 288 THR LEU ARG LYS ILE GLN TYR ASN LEU ASP THR ILE ASP SEQRES 7 A 288 ALA GLU LYS ASN ILE SER ASN LYS LEU LYS LYS GLY GLU SEQRES 8 A 288 VAL GLN ILE CYS LYS ARG PHE LYS ASN GLY SER ILE ARG SEQRES 9 A 288 GLU VAL PHE ASN ILE LEU VAL GLU GLU LEU LYS SER THR SEQRES 10 A 288 THR VAL VAL ASN LEU SER ASP LEU VAL GLU LEU TYR SER SEQRES 11 A 288 MSE LEU ASP ASP GLU GLU SER LEU PHE ILE PRO LEU ARG SEQRES 12 A 288 LEU LEU SER VAL ASP GLY ASN LEU LEU ASN PHE GLU VAL SEQRES 13 A 288 LYS LYS PHE LEU ASN ALA LEU VAL TRP ARG ARG ILE VAL SEQRES 14 A 288 LEU LEU ASN ALA SER ASN GLU GLY ASP LYS LEU LEU GLN SEQRES 15 A 288 HIS ILE VAL LYS ARG VAL PHE ASP GLU GLU LEU PRO LYS SEQRES 16 A 288 ASN ASN ASP PHE PRO LEU PRO SER VAL ASP LEU LEU CYS SEQRES 17 A 288 ASP LYS SER LEU LEU THR PRO GLU TYR ILE SER GLU THR SEQRES 18 A 288 TYR GLY ARG PHE PRO ILE ASP GLN ASN ALA ILE ARG GLU SEQRES 19 A 288 GLU ILE TYR GLU GLU ILE SER GLN VAL GLU THR LEU ASN SEQRES 20 A 288 SER ASP ASN SER LEU GLU ILE LYS LEU HIS SER THR ILE SEQRES 21 A 288 GLY SER VAL ALA LYS GLU LYS ASN TYR THR ILE ASN TYR SEQRES 22 A 288 GLU THR ASN THR VAL GLU TYR GLU GLY HIS HIS HIS HIS SEQRES 23 A 288 HIS HIS MODRES 3KFO MSE A 1008 MET SELENOMETHIONINE HET MSE A1008 13 HET GOL A 1 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *100(H2 O) HELIX 1 1 ASN A 950 LYS A 966 1 17 HELIX 2 2 CYS A 972 LYS A 976 5 5 HELIX 3 3 ASN A 977 SER A 993 1 17 HELIX 4 4 ASN A 998 SER A 1007 1 10 HELIX 5 5 ASP A 1011 GLY A 1026 1 16 HELIX 6 6 ASN A 1027 LEU A 1029 5 3 HELIX 7 7 ASN A 1030 ALA A 1050 1 21 HELIX 8 8 ASP A 1055 GLU A 1068 1 14 HELIX 9 9 GLU A 1069 ASN A 1074 1 6 HELIX 10 10 SER A 1080 CYS A 1085 1 6 HELIX 11 11 ASP A 1086 LEU A 1090 5 5 HELIX 12 12 THR A 1091 GLY A 1100 1 10 HELIX 13 13 ASP A 1105 ASN A 1124 1 20 HELIX 14 14 ASN A 1127 LYS A 1142 1 16 SHEET 1 A 3 PHE A1076 PRO A1077 0 SHEET 2 A 3 THR A1154 TYR A1157 -1 O VAL A1155 N PHE A1076 SHEET 3 A 3 TYR A1146 ASN A1149 -1 N ASN A1149 O THR A1154 LINK C SER A1007 N MSE A1008 1555 1555 1.34 LINK C MSE A1008 N LEU A1009 1555 1555 1.33 SITE 1 AC1 3 PHE A1031 LYS A1035 PRO A1077 CRYST1 47.433 52.678 76.674 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021082 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013042 0.00000