PDB Short entry for 3KHR HEADER TRANSFERASE/DNA 30-OCT-09 3KHR TITLE DPO4 POST-EXTENSION TERNARY COMPLEX WITH THE CORRECT C OPPOSITE THE 2- TITLE 2 AMINOFLUORENE-GUANINE [AF]G LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP* COMPND 14 CP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND KEYWDS LESION BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, 2-AMINOFLUORENE, KEYWDS 2 SEMI-TARGETED MUTAGENESIS, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, KEYWDS 3 DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, KEYWDS 4 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE- KEYWDS 5 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 5 06-SEP-23 3KHR 1 REMARK REVDAT 4 13-OCT-21 3KHR 1 REMARK DBREF SEQADV LINK REVDAT 3 13-JUL-11 3KHR 1 VERSN REVDAT 2 16-MAR-10 3KHR 1 JRNL REVDAT 1 16-FEB-10 3KHR 0 JRNL AUTH O.RECHKOBLIT,A.KOLBANOVSKIY,L.MALININA,N.E.GEACINTOV, JRNL AUTH 2 S.BROYDE,D.J.PATEL JRNL TITL MECHANISM OF ERROR-FREE AND SEMITARGETED MUTAGENIC BYPASS OF JRNL TITL 2 AN AROMATIC AMINE LESION BY Y-FAMILY POLYMERASE DPO4. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 379 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20154704 JRNL DOI 10.1038/NSMB.1771 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 59976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3185 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1233 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.81000 REMARK 3 B13 (A**2) : -0.54000 REMARK 3 B23 (A**2) : 1.28000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7083 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9783 ; 1.444 ; 2.225 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 4.913 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;33.852 ;23.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1128 ;15.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1103 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4760 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3432 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5555 ; 1.296 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3651 ; 1.743 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4228 ; 2.821 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 902 E 918 REMARK 3 RESIDUE RANGE : D 803 D 814 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4088 -11.4801 -8.3164 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.1377 REMARK 3 T33: 0.2228 T12: -0.0095 REMARK 3 T13: 0.0243 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 1.3519 L22: 3.1387 REMARK 3 L33: 1.2809 L12: -1.4595 REMARK 3 L13: -0.6466 L23: 0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.1651 S12: 0.3635 S13: -0.2675 REMARK 3 S21: -0.4558 S22: -0.3869 S23: -0.1812 REMARK 3 S31: 0.1940 S32: -0.1527 S33: 0.2219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1901 J 1918 REMARK 3 RESIDUE RANGE : H 1803 H 1814 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8296 32.5105 -47.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2713 REMARK 3 T33: 0.2051 T12: 0.0740 REMARK 3 T13: 0.0476 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.1820 L22: 2.7618 REMARK 3 L33: 3.6132 L12: -0.7539 REMARK 3 L13: -0.5842 L23: 0.5074 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.2314 S13: 0.3164 REMARK 3 S21: 0.6428 S22: 0.1559 S23: 0.2172 REMARK 3 S31: -0.2345 S32: -0.4583 S33: -0.0398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0217 2.3216 1.6495 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.0698 REMARK 3 T33: 0.0557 T12: -0.0529 REMARK 3 T13: -0.0024 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.4390 L22: 1.6814 REMARK 3 L33: 0.4127 L12: -0.0398 REMARK 3 L13: -0.1963 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: 0.0355 S13: -0.0690 REMARK 3 S21: 0.0363 S22: -0.0578 S23: 0.0092 REMARK 3 S31: -0.0152 S32: -0.0352 S33: -0.0140 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0735 21.5894 -56.3325 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0964 REMARK 3 T33: 0.0715 T12: 0.0011 REMARK 3 T13: -0.0141 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.1812 L22: 1.4045 REMARK 3 L33: 2.0056 L12: -0.1835 REMARK 3 L13: -0.5354 L23: -0.5806 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0550 S13: 0.0867 REMARK 3 S21: 0.1037 S22: 0.0055 S23: -0.1005 REMARK 3 S31: 0.0546 S32: 0.0534 S33: -0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE, 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 901 REMARK 465 DC E 919 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT E 902 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA J1903 O3' DA J1903 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 808 O4' - C1' - N1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 811 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 814 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA E 903 O3' - P - O5' ANGL. DEV. = -22.1 DEGREES REMARK 500 DA E 903 O3' - P - OP2 ANGL. DEV. = -15.0 DEGREES REMARK 500 DA E 903 O3' - P - OP1 ANGL. DEV. = -15.1 DEGREES REMARK 500 DA E 903 O5' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 DA E 903 O5' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DC E 905 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DC E 907 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 911 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT E 913 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT H1804 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG H1805 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DA H1812 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC H1814 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DC J1901 O4' - C1' - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT J1902 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J1905 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DC J1907 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC J1914 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC J1915 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC J1918 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 54.92 29.83 REMARK 500 ARG A 77 73.46 -107.35 REMARK 500 ASN A 234 44.14 -153.00 REMARK 500 ASP A 277 86.64 36.72 REMARK 500 LYS A 278 -24.84 80.60 REMARK 500 TYR B1010 53.73 30.83 REMARK 500 ASN B1234 35.07 -145.60 REMARK 500 LYS B1278 -24.23 82.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 90.9 REMARK 620 3 ASP A 105 OD2 101.7 80.0 REMARK 620 4 TTP A 414 O1A 103.8 160.4 84.4 REMARK 620 5 TTP A 414 O1B 171.0 84.0 84.7 82.9 REMARK 620 6 TTP A 414 O3G 92.7 106.7 164.1 85.7 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 TTP A 414 O1A 91.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 90.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 GLU B1106 OE2 119.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 84.9 REMARK 620 3 ASP B1105 OD2 105.0 81.8 REMARK 620 4 TTP B1414 O1A 111.6 162.6 88.3 REMARK 620 5 TTP B1414 O1B 161.4 84.3 88.4 81.1 REMARK 620 6 TTP B1414 O3G 85.9 102.6 168.7 84.8 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 91.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF E 926 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF J 1926 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KHG RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHH RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH A C BASE OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHL RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 999 REMARK 999 SEQUENCE REMARK 999 FOR CHAINS E AND J, THE 19-MER SEQUENCE OF THE DNA OLIGO REMARK 999 IS 5'-C T A A C [AF]G C T A C C A T C C A A C C-3', WHERE REMARK 999 [AF]G DENOTES A COVALENT MODIFICATION BY AF ON THE G BASE REMARK 999 906 IN CHAIN E AND THE G BASE 1906 IN CHAIN J. DBREF 3KHR A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHR D 803 815 PDB 3KHR 3KHR 803 815 DBREF 3KHR E 901 919 PDB 3KHR 3KHR 901 919 DBREF 3KHR B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHR H 1803 1815 PDB 3KHR 3KHR 1803 1815 DBREF 3KHR J 1901 1919 PDB 3KHR 3KHR 1901 1919 SEQADV 3KHR GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3KHR DDG D 815 PDB 3KHR G 14 ENGINEERED MUTATION SEQADV 3KHR GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQADV 3KHR DDG H 1815 PDB 3KHR G 14 ENGINEERED MUTATION SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DT DT DG DG DA DT DG DG DT DA DG DC DDG SEQRES 1 E 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 E 19 DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DT DT DG DG DA DT DG DG DT DA DG DC DDG SEQRES 1 J 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 J 19 DC DC DA DA DC DC MODRES 3KHR DDG D 815 DG MODRES 3KHR DDG H 1815 DG HET DDG D 815 21 HET DDG H1815 21 HET TTP A 414 29 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET AF E 926 14 HET TTP B1414 29 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HET AF J1926 14 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM AF 2-AMINOFLUORENE FORMUL 2 DDG 2(C10 H14 N5 O6 P) FORMUL 7 TTP 2(C10 H17 N2 O14 P3) FORMUL 8 CA 6(CA 2+) FORMUL 11 AF 2(C13 H11 N) FORMUL 17 HOH *402(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 GLU A 94 SER A 96 5 3 HELIX 7 7 ASP A 117 LYS A 137 1 21 HELIX 8 8 ASN A 147 LYS A 159 1 13 HELIX 9 9 ASP A 167 LEU A 178 1 12 HELIX 10 10 ASP A 179 VAL A 183 5 5 HELIX 11 11 GLY A 187 LYS A 196 1 10 HELIX 12 12 LYS A 201 ILE A 208 5 8 HELIX 13 13 GLU A 209 GLY A 218 1 10 HELIX 14 14 GLY A 218 ARG A 230 1 13 HELIX 15 15 ASN A 257 ASP A 277 1 21 HELIX 16 16 SER A 307 ASP A 326 1 20 HELIX 17 17 TYR B 1010 ASN B 1020 1 11 HELIX 18 18 PRO B 1021 LYS B 1024 5 4 HELIX 19 19 ASN B 1047 PHE B 1053 1 7 HELIX 20 20 PRO B 1060 LEU B 1068 1 9 HELIX 21 21 ARG B 1077 GLU B 1094 1 18 HELIX 22 22 ASP B 1117 LYS B 1137 1 21 HELIX 23 23 ASN B 1147 LYS B 1159 1 13 HELIX 24 24 ASP B 1167 LEU B 1178 1 12 HELIX 25 25 ASP B 1179 VAL B 1183 5 5 HELIX 26 26 GLY B 1187 LEU B 1197 1 11 HELIX 27 27 LYS B 1201 ILE B 1208 5 8 HELIX 28 28 GLU B 1209 GLY B 1218 1 10 HELIX 29 29 GLY B 1218 ARG B 1230 1 13 HELIX 30 30 ASN B 1257 LEU B 1276 1 20 HELIX 31 31 SER B 1307 GLU B 1324 1 18 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 287 O GLY A 334 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1032 O ALA B1042 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O ILE B1330 N SER B1255 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1331 SHEET 4 F 4 ILE B1295 THR B1301 -1 O VAL B1296 N ALA B1288 LINK O3' DC D 814 P DDG D 815 1555 1555 1.60 LINK C8 DG E 906 N AF E 926 1555 1555 1.45 LINK O3' DC H1814 P DDG H1815 1555 1555 1.60 LINK C8 DG J1906 N AF J1926 1555 1555 1.45 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.29 LINK O PHE A 8 CA CA A 416 1555 1555 2.31 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.54 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.33 LINK O ALA A 181 CA CA A 417 1555 1555 2.31 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O1A TTP A 414 CA CA A 415 1555 1555 2.35 LINK O1A TTP A 414 CA CA A 416 1555 1555 2.32 LINK O1B TTP A 414 CA CA A 416 1555 1555 2.31 LINK O3G TTP A 414 CA CA A 416 1555 1555 2.40 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.75 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.30 LINK O PHE B1008 CA CA B1416 1555 1555 2.30 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.34 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.33 LINK O ALA B1181 CA CA B1417 1555 1555 2.31 LINK O ILE B1186 CA CA B1417 1555 1555 2.57 LINK O1A TTP B1414 CA CA B1416 1555 1555 2.41 LINK O1B TTP B1414 CA CA B1416 1555 1555 2.31 LINK O3G TTP B1414 CA CA B1416 1555 1555 2.42 CISPEP 1 LYS A 159 PRO A 160 0 -8.16 CISPEP 2 LYS B 1159 PRO B 1160 0 -5.00 SITE 1 AC1 21 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 21 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 21 ARG A 51 ALA A 57 ASP A 105 LYS A 159 SITE 4 AC1 21 CA A 415 CA A 416 HOH A 524 HOH A 553 SITE 5 AC1 21 HOH A 567 HOH A 587 HOH A 597 DDG D 815 SITE 6 AC1 21 DA E 904 SITE 1 AC2 7 ASP A 7 ASP A 105 GLU A 106 TTP A 414 SITE 2 AC2 7 CA A 416 HOH A 510 DDG D 815 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 TTP A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 513 HOH A 585 SITE 2 AC4 5 HOH D 514 SITE 1 AC5 9 ARG A 247 ILE A 248 HIS A 285 VAL A 287 SITE 2 AC5 9 VAL A 335 ARG A 336 DC E 905 DG E 906 SITE 3 AC5 9 DC E 907 SITE 1 AC6 22 HOH B 21 HOH B 25 HOH B 39 HOH B 65 SITE 2 AC6 22 HOH B 167 HOH B 400 ASP B1007 PHE B1008 SITE 3 AC6 22 ASP B1009 TYR B1010 PHE B1011 TYR B1012 SITE 4 AC6 22 ALA B1044 THR B1045 TYR B1048 ARG B1051 SITE 5 AC6 22 ALA B1057 ASP B1105 LYS B1159 CA B1416 SITE 6 AC6 22 DDG H1815 DA J1904 SITE 1 AC7 5 ASP B1007 GLU B1106 LYS B1152 HOH B1519 SITE 2 AC7 5 DDG H1815 SITE 1 AC8 5 ASP B1007 PHE B1008 ASP B1105 TTP B1414 SITE 2 AC8 5 HOH B1519 SITE 1 AC9 7 HOH B 344 ALA B1181 ILE B1186 HOH B1511 SITE 2 AC9 7 HOH B1512 HOH B1513 HOH H 331 SITE 1 BC1 8 ILE B1248 HIS B1285 VAL B1287 VAL B1335 SITE 2 BC1 8 ARG B1336 DC J1905 DG J1906 DC J1907 CRYST1 52.477 53.019 99.858 81.76 76.76 70.14 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019056 -0.006882 -0.004000 0.00000 SCALE2 0.000000 0.020054 -0.001441 0.00000 SCALE3 0.000000 0.000000 0.010314 0.00000