PDB Short entry for 3KMR HEADER TRANSCRIPTION 11-NOV-09 3KMR TITLE CRYSTAL STRUCTURE OF RARALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH AN TITLE 2 AGONIST LIGAND (AM580) AND A COACTIVATOR FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUE 176-421); COMPND 5 SYNONYM: RAR-ALPHA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP B MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: NR INTERACTION MOTIF 2 (UNP RESIDUE 686-698); COMPND 11 SYNONYM: NCOA-1, STEROID RECEPTOR COACTIVATOR 1, SRC-1, RIP160, COMPND 12 PROTEIN HIN-2, RENAL CARCINOMA ANTIGEN NY-REN-52; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1B1, RARA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC KEYWDS NUCLEAR RECEPTOR TRANSCRIPTION FACTOR LIGAND BINDING DOMAIN, DNA- KEYWDS 2 BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, PROTO-ONCOGENE, KEYWDS 3 RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-FINGER, KEYWDS 4 ACTIVATOR, ACYLTRANSFERASE, ISOPEPTIDE BOND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.BOURGUET,C.TEYSSIER REVDAT 4 06-SEP-23 3KMR 1 REMARK SEQADV REVDAT 3 14-JUL-10 3KMR 1 JRNL REVDAT 2 23-JUN-10 3KMR 1 JRNL REVDAT 1 02-JUN-10 3KMR 0 JRNL AUTH A.LE MAIRE,C.TEYSSIER,C.ERB,M.GRIMALDI,S.ALVAREZ, JRNL AUTH 2 A.R.DE LERA,P.BALAGUER,H.GRONEMEYER,C.A.ROYER,P.GERMAIN, JRNL AUTH 3 W.BOURGUET JRNL TITL A UNIQUE SECONDARY-STRUCTURE SWITCH CONTROLS CONSTITUTIVE JRNL TITL 2 GENE REPRESSION BY RETINOIC ACID RECEPTOR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 801 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20543827 JRNL DOI 10.1038/NSMB.1855 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 21452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2000 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2707 ; 2.700 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 4.469 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;33.712 ;24.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;14.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1451 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 0.490 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1994 ; 0.980 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 775 ; 1.750 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 2.771 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2790 -0.2120 -13.8450 REMARK 3 T TENSOR REMARK 3 T11: -0.1174 T22: -0.0273 REMARK 3 T33: -0.1778 T12: 0.0285 REMARK 3 T13: 0.0157 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.9204 L22: 1.1517 REMARK 3 L33: 2.2730 L12: -1.2056 REMARK 3 L13: 1.1943 L23: -0.4319 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.2930 S13: 0.0291 REMARK 3 S21: -0.0271 S22: -0.0849 S23: 0.0439 REMARK 3 S31: -0.2014 S32: 0.1784 S33: 0.0773 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 629 C 639 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8070 -4.4300 -1.3720 REMARK 3 T TENSOR REMARK 3 T11: -0.0620 T22: 0.0799 REMARK 3 T33: -0.0381 T12: 0.0527 REMARK 3 T13: 0.1129 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 8.8708 L22: 24.5453 REMARK 3 L33: 12.2324 L12: 1.4022 REMARK 3 L13: -1.8869 L23: -3.2503 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: -0.4924 S13: -0.1438 REMARK 3 S21: 0.8383 S22: -0.1424 S23: 1.0025 REMARK 3 S31: 0.0664 S32: -0.2588 S33: -0.0323 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1520 -8.6170 -13.1240 REMARK 3 T TENSOR REMARK 3 T11: -0.1021 T22: 0.0012 REMARK 3 T33: -0.0488 T12: 0.0642 REMARK 3 T13: 0.0133 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 8.0348 L22: 12.2424 REMARK 3 L33: 24.9241 L12: 8.7134 REMARK 3 L13: 10.9931 L23: 9.9744 REMARK 3 S TENSOR REMARK 3 S11: 0.1863 S12: 0.1062 S13: -0.2429 REMARK 3 S21: -0.1156 S22: 0.0046 S23: 0.1717 REMARK 3 S31: 0.0905 S32: 0.1369 S33: -0.1908 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 85 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8540 -4.2810 -11.7050 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: 0.0127 REMARK 3 T33: -0.0934 T12: 0.0104 REMARK 3 T13: 0.0104 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.8425 L22: 0.6144 REMARK 3 L33: 1.4532 L12: -0.4892 REMARK 3 L13: 0.7587 L23: -0.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.1219 S13: -0.1372 REMARK 3 S21: -0.0359 S22: -0.0553 S23: 0.0805 REMARK 3 S31: -0.1313 S32: 0.1324 S33: 0.0304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : 0.04300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22600 REMARK 200 R SYM FOR SHELL (I) : 0.31900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DKF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 6000, 5% (W/V) GLYCEROL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.15350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.60900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.15350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.60900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 GLY A 168 REMARK 465 LEU A 169 REMARK 465 VAL A 170 REMARK 465 PRO A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 HIS A 175 REMARK 465 GLU A 176 REMARK 465 SER A 177 REMARK 465 TYR A 178 REMARK 465 THR A 179 REMARK 465 LEU A 180 REMARK 465 THR A 181 REMARK 465 ASN A 416 REMARK 465 SER A 417 REMARK 465 GLU A 418 REMARK 465 GLY A 419 REMARK 465 LEU A 420 REMARK 465 ASP A 421 REMARK 465 ARG C 628 REMARK 465 GLY C 639 REMARK 465 SER C 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 267 O HOH A 46 1.97 REMARK 500 OE2 GLU A 230 NZ LYS A 234 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 213 43.27 34.09 REMARK 500 GLN C 637 -74.88 -86.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EQN A 1 DBREF 3KMR A 176 421 UNP P10276 RARA_HUMAN 176 421 DBREF 3KMR C 628 640 UNP Q15788 NCOA1_HUMAN 686 698 SEQADV 3KMR MET A 156 UNP P10276 EXPRESSION TAG SEQADV 3KMR GLY A 157 UNP P10276 EXPRESSION TAG SEQADV 3KMR SER A 158 UNP P10276 EXPRESSION TAG SEQADV 3KMR SER A 159 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 160 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 161 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 162 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 163 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 164 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 165 UNP P10276 EXPRESSION TAG SEQADV 3KMR SER A 166 UNP P10276 EXPRESSION TAG SEQADV 3KMR SER A 167 UNP P10276 EXPRESSION TAG SEQADV 3KMR GLY A 168 UNP P10276 EXPRESSION TAG SEQADV 3KMR LEU A 169 UNP P10276 EXPRESSION TAG SEQADV 3KMR VAL A 170 UNP P10276 EXPRESSION TAG SEQADV 3KMR PRO A 171 UNP P10276 EXPRESSION TAG SEQADV 3KMR ARG A 172 UNP P10276 EXPRESSION TAG SEQADV 3KMR GLY A 173 UNP P10276 EXPRESSION TAG SEQADV 3KMR SER A 174 UNP P10276 EXPRESSION TAG SEQADV 3KMR HIS A 175 UNP P10276 EXPRESSION TAG SEQRES 1 A 266 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 266 LEU VAL PRO ARG GLY SER HIS GLU SER TYR THR LEU THR SEQRES 3 A 266 PRO GLU VAL GLY GLU LEU ILE GLU LYS VAL ARG LYS ALA SEQRES 4 A 266 HIS GLN GLU THR PHE PRO ALA LEU CYS GLN LEU GLY LYS SEQRES 5 A 266 TYR THR THR ASN ASN SER SER GLU GLN ARG VAL SER LEU SEQRES 6 A 266 ASP ILE ASP LEU TRP ASP LYS PHE SER GLU LEU SER THR SEQRES 7 A 266 LYS CYS ILE ILE LYS THR VAL GLU PHE ALA LYS GLN LEU SEQRES 8 A 266 PRO GLY PHE THR THR LEU THR ILE ALA ASP GLN ILE THR SEQRES 9 A 266 LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU ILE LEU ARG SEQRES 10 A 266 ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET THR SEQRES 11 A 266 PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET HIS SEQRES 12 A 266 ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE ALA SEQRES 13 A 266 PHE ALA ASN GLN LEU LEU PRO LEU GLU MET ASP ASP ALA SEQRES 14 A 266 GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS GLY SEQRES 15 A 266 ASP ARG GLN ASP LEU GLU GLN PRO ASP ARG VAL ASP MET SEQRES 16 A 266 LEU GLN GLU PRO LEU LEU GLU ALA LEU LYS VAL TYR VAL SEQRES 17 A 266 ARG LYS ARG ARG PRO SER ARG PRO HIS MET PHE PRO LYS SEQRES 18 A 266 MET LEU MET LYS ILE THR ASP LEU ARG SER ILE SER ALA SEQRES 19 A 266 LYS GLY ALA GLU ARG VAL ILE THR LEU LYS MET GLU ILE SEQRES 20 A 266 PRO GLY SER MET PRO PRO LEU ILE GLN GLU MET LEU GLU SEQRES 21 A 266 ASN SER GLU GLY LEU ASP SEQRES 1 C 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER HET EQN A 1 26 HETNAM EQN 4-{[(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN- HETNAM 2 EQN 2-YL)CARBONYL]AMINO}BENZOIC ACID FORMUL 3 EQN C22 H25 N O3 FORMUL 4 HOH *121(H2 O) HELIX 1 1 PRO A 182 GLU A 197 1 16 HELIX 2 2 ALA A 201 LEU A 205 5 5 HELIX 3 3 ASP A 221 GLN A 245 1 25 HELIX 4 4 GLY A 248 LEU A 252 5 5 HELIX 5 5 THR A 253 ARG A 276 1 24 HELIX 6 6 ARG A 294 GLY A 301 1 8 HELIX 7 7 PHE A 302 PRO A 304 5 3 HELIX 8 8 LEU A 305 LEU A 317 1 13 HELIX 9 9 PRO A 318 GLU A 320 5 3 HELIX 10 10 ASP A 322 ILE A 335 1 14 HELIX 11 11 GLN A 344 ARG A 367 1 24 HELIX 12 12 HIS A 372 ILE A 402 1 31 HELIX 13 13 PRO A 407 GLU A 415 1 9 HELIX 14 14 HIS C 629 GLU C 638 1 10 SHEET 1 A 3 TYR A 277 THR A 278 0 SHEET 2 A 3 THR A 283 THR A 285 -1 O THR A 283 N THR A 278 SHEET 3 A 3 THR A 291 ASN A 293 -1 O LEU A 292 N MET A 284 SITE 1 AC1 13 HOH A 14 HOH A 15 PHE A 228 LEU A 231 SITE 2 AC1 13 SER A 232 LEU A 269 ILE A 273 ARG A 276 SITE 3 AC1 13 PHE A 286 SER A 287 PHE A 302 GLY A 391 SITE 4 AC1 13 LEU A 398 CRYST1 88.307 61.218 49.444 90.00 105.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011324 0.000000 0.003115 0.00000 SCALE2 0.000000 0.016335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020976 0.00000