PDB Short entry for 3KRL HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-NOV-09 3KRL TITLE CFMS TYROSINE KINASE IN COMPLEX WITH 5-CYANO-FURAN-2-CARBOXYLIC ACID TITLE 2 [4-(4-METHYL-PIPERAZIN-1-YL)-2-PIPERIDIN-1-YL-PHENYL]-AMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR, BASIC COMPND 3 FIBROBLAST GROWTH FACTOR RECEPTOR 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 538-678, 753-922; COMPND 6 SYNONYM: C-FMS, FGFR-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: NATIVE KINASE INSERT DOMAIN OF C-FMS REPLACED BY FGF COMPND 11 RECEPTOR KINASE INSERT DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: CSF1R, FGFR1; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, INHIBITOR, CHIMERA, ATP-BINDING, DISULFIDE BOND, KEYWDS 2 GLYCOPROTEIN, IMMUNOGLOBULIN DOMAIN, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHOPROTEIN, PROTO-ONCOGENE, RECEPTOR, TRANSFERASE, KEYWDS 4 TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, TRANSFERASE-TRANSFERASE KEYWDS 5 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHUBERT REVDAT 5 06-SEP-23 3KRL 1 REMARK REVDAT 4 13-OCT-21 3KRL 1 REMARK SEQADV REVDAT 3 23-AUG-17 3KRL 1 SOURCE REVDAT 2 14-DEC-11 3KRL 1 JRNL VERSN REVDAT 1 01-DEC-10 3KRL 0 JRNL AUTH C.R.ILLIG,C.L.MANTHEY,M.J.WALL,S.K.MEEGALLA,J.CHEN, JRNL AUTH 2 K.J.WILSON,S.K.BALLENTINE,R.L.DESJARLAIS,C.SCHUBERT, JRNL AUTH 3 C.S.CRYSLER,Y.CHEN,C.J.MOLLOY,M.A.CHAIKIN,R.R.DONATELLI, JRNL AUTH 4 E.YURKOW,Z.ZHOU,M.R.PLAYER,B.E.TOMCZUK JRNL TITL OPTIMIZATION OF A POTENT CLASS OF ARYLAMIDE JRNL TITL 2 COLONY-STIMULATING FACTOR-1 RECEPTOR INHIBITORS LEADING TO JRNL TITL 3 ANTI-INFLAMMATORY CLINICAL CANDIDATE JRNL TITL 4 4-CYANO-N-[2-(1-CYCLOHEXEN-1-YL)-4-[1-[(DIMETHYLAMINO) JRNL TITL 5 ACETYL]-4-PIPERIDINYL]PHENYL]-1H-IMIDAZOLE-2-CARBOXAMIDE JRNL TITL 6 (JNJ-28312141). JRNL REF J.MED.CHEM. V. 54 7860 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 22039836 JRNL DOI 10.1021/JM200900Q REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 12852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.1600 - 4.0920 0.96 2491 124 0.1951 0.2283 REMARK 3 2 4.0920 - 3.2567 0.98 2531 133 0.1828 0.2452 REMARK 3 3 3.2567 - 2.8476 0.98 2530 139 0.2204 0.3102 REMARK 3 4 2.8476 - 2.5884 0.90 2324 126 0.2443 0.3260 REMARK 3 5 2.5884 - 2.4000 0.90 2337 117 0.2278 0.2707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 61.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2326 REMARK 3 ANGLE : 0.815 3130 REMARK 3 CHIRALITY : 0.046 338 REMARK 3 PLANARITY : 0.006 395 REMARK 3 DIHEDRAL : 19.026 854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 869:912) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1652 -26.2901 8.1137 REMARK 3 T TENSOR REMARK 3 T11: 0.6590 T22: 0.6794 REMARK 3 T33: 0.9373 T12: 0.0677 REMARK 3 T13: 0.0230 T23: 0.1602 REMARK 3 L TENSOR REMARK 3 L11: 0.0367 L22: 0.0449 REMARK 3 L33: 0.0753 L12: 0.0069 REMARK 3 L13: -0.0047 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.8331 S12: -0.3549 S13: 2.2662 REMARK 3 S21: -1.3028 S22: -1.1527 S23: 0.0069 REMARK 3 S31: -0.7315 S32: -0.5192 S33: -0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 16.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2I0V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-19% PEG3350 100MM NAAC PH 5.6 200MM REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.55550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.41473 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.52333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.55550 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.41473 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.52333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.55550 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.41473 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.52333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.82946 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.04667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.82946 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.04667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.82946 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 923 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 A 923 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 535 REMARK 465 VAL A 536 REMARK 465 ASP A 537 REMARK 465 TYR A 538 REMARK 465 LYS A 539 REMARK 465 TYR A 540 REMARK 465 LYS A 541 REMARK 465 GLN A 542 REMARK 465 LYS A 543 REMARK 465 PRO A 544 REMARK 465 GLU A 554 REMARK 465 SER A 555 REMARK 465 TYR A 556 REMARK 465 GLU A 557 REMARK 465 GLY A 558 REMARK 465 ASN A 559 REMARK 465 SER A 560 REMARK 465 TYR A 561 REMARK 465 THR A 562 REMARK 465 PHE A 563 REMARK 465 ILE A 564 REMARK 465 ASP A 565 REMARK 465 PRO A 566 REMARK 465 THR A 567 REMARK 465 GLN A 568 REMARK 465 LEU A 569 REMARK 465 HIS A 623 REMARK 465 PRO A 680 REMARK 465 PRO A 681 REMARK 465 GLY A 682 REMARK 465 LEU A 683 REMARK 465 GLU A 684 REMARK 465 TYR A 685 REMARK 465 SER A 686 REMARK 465 TYR A 687 REMARK 465 ASN A 688 REMARK 465 PRO A 689 REMARK 465 SER A 690 REMARK 465 HIS A 691 REMARK 465 ASN A 692 REMARK 465 PRO A 693 REMARK 465 GLU A 694 REMARK 465 GLU A 695 REMARK 465 ASN A 814 REMARK 465 GLN A 913 REMARK 465 ALA A 914 REMARK 465 GLN A 915 REMARK 465 GLU A 916 REMARK 465 ASP A 917 REMARK 465 ARG A 918 REMARK 465 ARG A 919 REMARK 465 GLU A 920 REMARK 465 ARG A 921 REMARK 465 ASP A 922 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 545 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 923 O4 SO4 A 923 3655 0.81 REMARK 500 O2 SO4 A 923 O3 SO4 A 923 2545 1.10 REMARK 500 O1 SO4 A 923 O3 SO4 A 923 2545 1.26 REMARK 500 S SO4 A 923 O3 SO4 A 923 2545 1.46 REMARK 500 S SO4 A 923 O4 SO4 A 923 2545 1.46 REMARK 500 S SO4 A 923 O1 SO4 A 923 2545 1.46 REMARK 500 O3 SO4 A 923 O3 SO4 A 923 2545 1.77 REMARK 500 O3 SO4 A 923 O4 SO4 A 923 2545 1.77 REMARK 500 O1 SO4 A 923 O2 SO4 A 923 2545 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 547 132.50 -178.89 REMARK 500 LYS A 619 -129.23 -78.91 REMARK 500 HIS A 643 139.68 -170.38 REMARK 500 ARG A 777 -2.34 74.65 REMARK 500 ASP A 778 44.12 -143.32 REMARK 500 THR A 787 -158.12 -111.52 REMARK 500 CYS A 830 26.37 49.87 REMARK 500 ASN A 862 -163.02 -167.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KRL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 923 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KRJ RELATED DB: PDB DBREF 3KRL A 538 678 UNP P07333 CSF1R_HUMAN 538 678 DBREF 3KRL A 679 699 UNP P11362 FGFR1_HUMAN 577 597 DBREF 3KRL A 753 922 UNP P07333 CSF1R_HUMAN 753 922 SEQADV 3KRL GLY A 535 UNP P07333 EXPRESSION TAG SEQADV 3KRL VAL A 536 UNP P07333 EXPRESSION TAG SEQADV 3KRL ASP A 537 UNP P07333 EXPRESSION TAG SEQADV 3KRL SER A 686 UNP P11362 CYS 584 ENGINEERED MUTATION SEQRES 1 A 335 GLY VAL ASP TYR LYS TYR LYS GLN LYS PRO LYS TYR GLN SEQRES 2 A 335 VAL ARG TRP LYS ILE ILE GLU SER TYR GLU GLY ASN SER SEQRES 3 A 335 TYR THR PHE ILE ASP PRO THR GLN LEU PRO TYR ASN GLU SEQRES 4 A 335 LYS TRP GLU PHE PRO ARG ASN ASN LEU GLN PHE GLY LYS SEQRES 5 A 335 THR LEU GLY ALA GLY ALA PHE GLY LYS VAL VAL GLU ALA SEQRES 6 A 335 THR ALA PHE GLY LEU GLY LYS GLU ASP ALA VAL LEU LYS SEQRES 7 A 335 VAL ALA VAL LYS MET LEU LYS SER THR ALA HIS ALA ASP SEQRES 8 A 335 GLU LYS GLU ALA LEU MET SER GLU LEU LYS ILE MET SER SEQRES 9 A 335 HIS LEU GLY GLN HIS GLU ASN ILE VAL ASN LEU LEU GLY SEQRES 10 A 335 ALA CYS THR HIS GLY GLY PRO VAL LEU VAL ILE THR GLU SEQRES 11 A 335 TYR CYS CYS TYR GLY ASP LEU LEU ASN PHE LEU ARG ARG SEQRES 12 A 335 LYS ARG PRO PRO GLY LEU GLU TYR SER TYR ASN PRO SER SEQRES 13 A 335 HIS ASN PRO GLU GLU GLN LEU SER SER ARG ASP LEU LEU SEQRES 14 A 335 HIS PHE SER SER GLN VAL ALA GLN GLY MET ALA PHE LEU SEQRES 15 A 335 ALA SER LYS ASN CYS ILE HIS ARG ASP VAL ALA ALA ARG SEQRES 16 A 335 ASN VAL LEU LEU THR ASN GLY HIS VAL ALA LYS ILE GLY SEQRES 17 A 335 ASP PHE GLY LEU ALA ARG ASP ILE MET ASN ASP SER ASN SEQRES 18 A 335 TYR ILE VAL LYS GLY ASN ALA ARG LEU PRO VAL LYS TRP SEQRES 19 A 335 MET ALA PRO GLU SER ILE PHE ASP CYS VAL TYR THR VAL SEQRES 20 A 335 GLN SER ASP VAL TRP SER TYR GLY ILE LEU LEU TRP GLU SEQRES 21 A 335 ILE PHE SER LEU GLY LEU ASN PRO TYR PRO GLY ILE LEU SEQRES 22 A 335 VAL ASN SER LYS PHE TYR LYS LEU VAL LYS ASP GLY TYR SEQRES 23 A 335 GLN MET ALA GLN PRO ALA PHE ALA PRO LYS ASN ILE TYR SEQRES 24 A 335 SER ILE MET GLN ALA CYS TRP ALA LEU GLU PRO THR HIS SEQRES 25 A 335 ARG PRO THR PHE GLN GLN ILE CYS SER PHE LEU GLN GLU SEQRES 26 A 335 GLN ALA GLN GLU ASP ARG ARG GLU ARG ASP HET KRL A 1 56 HET SO4 A 923 5 HETNAM KRL 5-CYANO-N-[4-(4-METHYLPIPERAZIN-1-YL)-2-PIPERIDIN-1- HETNAM 2 KRL YLPHENYL]FURAN-2-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 2 KRL C22 H27 N5 O2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *37(H2 O) HELIX 1 1 ASN A 572 GLU A 576 5 5 HELIX 2 2 PRO A 578 ASN A 580 5 3 HELIX 3 3 ALA A 624 GLY A 641 1 18 HELIX 4 4 ASP A 670 ARG A 677 1 8 HELIX 5 5 SER A 698 LYS A 772 1 22 HELIX 6 6 ALA A 780 ARG A 782 5 3 HELIX 7 7 PHE A 797 ARG A 801 5 5 HELIX 8 8 PRO A 818 MET A 822 5 5 HELIX 9 9 ALA A 823 ASP A 829 1 7 HELIX 10 10 THR A 833 SER A 850 1 18 HELIX 11 11 ASN A 862 ASP A 871 1 10 HELIX 12 12 PRO A 882 TRP A 893 1 12 HELIX 13 13 GLU A 896 ARG A 900 5 5 HELIX 14 14 THR A 902 GLN A 911 1 10 SHEET 1 A 2 LYS A 551 ILE A 552 0 SHEET 2 A 2 CYS A 774 ILE A 775 -1 O ILE A 775 N LYS A 551 SHEET 1 B 5 LEU A 582 ALA A 590 0 SHEET 2 B 5 GLY A 594 PHE A 602 -1 O GLU A 598 N LYS A 586 SHEET 3 B 5 VAL A 610 LEU A 618 -1 O VAL A 615 N VAL A 597 SHEET 4 B 5 LEU A 660 GLU A 664 -1 O THR A 663 N ALA A 614 SHEET 5 B 5 LEU A 649 CYS A 653 -1 N LEU A 650 O ILE A 662 SHEET 1 C 2 VAL A 784 THR A 787 0 SHEET 2 C 2 VAL A 791 ILE A 794 -1 O LYS A 793 N LEU A 785 SHEET 1 D 2 ILE A 810 VAL A 811 0 SHEET 2 D 2 ARG A 816 LEU A 817 -1 O LEU A 817 N ILE A 810 SITE 1 AC1 10 LYS A 586 LEU A 588 LYS A 616 THR A 663 SITE 2 AC1 10 GLU A 664 TYR A 665 CYS A 666 LEU A 785 SITE 3 AC1 10 PHE A 797 ARG A 801 SITE 1 AC2 2 HIS A 655 GLY A 656 CRYST1 81.111 81.111 142.570 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012329 0.007118 0.000000 0.00000 SCALE2 0.000000 0.014236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007014 0.00000