PDB Short entry for 3L2U HEADER RECOMBINATION/DNA 15-DEC-09 3L2U TITLE CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN TITLE 2 COMPLEX WITH MAGNESIUM AND GS9137 (ELVITEGRAVIR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IN, P42IN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP COMPND 8 *A)-3'; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: 19 NUCLEOTIDE PREPROCESSED PFV DONOR DNA; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)- COMPND 14 3'; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: 17 NUCLEOTIDE PREPROCESSED PFV DONOR DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU); SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 STRAIN: HSRV2; SOURCE 6 GENE: POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PC2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSSH6P-PFV-INFL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, TETRAMER, DNA INTEGRATION, ENDONUCLEASE, METAL- KEYWDS 2 BINDING, MULTIFUNCTIONAL ENZYME, NUCLEASE, NUCLEOTIDYLTRANSFERASE, KEYWDS 3 NUCLEUS, TRANSFERASE, VIRAL NUCLEOPROTEIN, VIRION, ZINC, DNA- KEYWDS 4 BINDING, ZINC BINDING, HHCC MOTIF, VIRAL PROTEIN, RECOMBINATION, KEYWDS 5 RECOMBINATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARE,S.S.GUPTA,P.CHEREPANOV REVDAT 3 01-NOV-23 3L2U 1 REMARK SEQADV HETSYN LINK REVDAT 2 16-MAR-10 3L2U 1 JRNL REVDAT 1 09-FEB-10 3L2U 0 JRNL AUTH S.HARE,S.S.GUPTA,E.VALKOV,A.ENGELMAN,P.CHEREPANOV JRNL TITL RETROVIRAL INTASOME ASSEMBLY AND INHIBITION OF DNA STRAND JRNL TITL 2 TRANSFER JRNL REF NATURE V. 464 232 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20118915 JRNL DOI 10.1038/NATURE08784 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4152 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : 2.56000 REMARK 3 B33 (A**2) : -5.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.559 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5144 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7173 ; 1.551 ; 2.160 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;33.827 ;23.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 681 ;18.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.688 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 811 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3638 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2657 ; 0.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4340 ; 0.851 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2487 ; 1.211 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2833 ; 2.137 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 119 A 200 4 REMARK 3 1 B 119 B 200 4 REMARK 3 2 A 241 A 257 4 REMARK 3 2 B 241 B 257 4 REMARK 3 3 A 263 A 273 4 REMARK 3 3 B 263 B 273 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 860 ; 0.40 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 860 ; 0.54 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -67.6670 27.1680 -56.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.4352 REMARK 3 T33: 0.5539 T12: -0.0709 REMARK 3 T13: -0.0836 T23: -0.1550 REMARK 3 L TENSOR REMARK 3 L11: 3.9438 L22: 0.8370 REMARK 3 L33: 6.1679 L12: 0.5522 REMARK 3 L13: 3.2167 L23: 1.3059 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: -0.0382 S13: -0.2172 REMARK 3 S21: -0.1320 S22: -0.5083 S23: 0.3458 REMARK 3 S31: 0.2253 S32: -0.6664 S33: 0.4268 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -35.4650 38.5820 -5.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.2655 REMARK 3 T33: 0.2039 T12: -0.0587 REMARK 3 T13: 0.0554 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 1.5608 L22: 3.2226 REMARK 3 L33: 2.5038 L12: -0.0125 REMARK 3 L13: 0.2194 L23: 0.6209 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.4244 S13: -0.0744 REMARK 3 S21: 0.1044 S22: 0.0581 S23: 0.0894 REMARK 3 S31: 0.3061 S32: -0.1500 S33: 0.0521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): -54.2940 27.5930 -27.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.4363 T22: 0.4373 REMARK 3 T33: 0.7095 T12: -0.2645 REMARK 3 T13: 0.0737 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 2.3308 L22: 0.8930 REMARK 3 L33: 7.7064 L12: -0.4293 REMARK 3 L13: -1.3196 L23: 0.7819 REMARK 3 S TENSOR REMARK 3 S11: -0.2751 S12: -0.4173 S13: -0.5791 REMARK 3 S21: 0.1845 S22: -0.1407 S23: 0.4637 REMARK 3 S31: 0.9195 S32: -0.4460 S33: 0.4158 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 278 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9660 36.4870 15.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.5444 REMARK 3 T33: 0.1682 T12: 0.0474 REMARK 3 T13: 0.1090 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 4.3996 L22: 1.9498 REMARK 3 L33: 2.9515 L12: -0.2750 REMARK 3 L13: 0.4446 L23: -0.3916 REMARK 3 S TENSOR REMARK 3 S11: -0.1849 S12: -0.7882 S13: -0.1434 REMARK 3 S21: 0.4036 S22: 0.1829 S23: 0.1318 REMARK 3 S31: 0.3409 S32: -0.1122 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 19 REMARK 3 RESIDUE RANGE : D 1 D 17 REMARK 3 ORIGIN FOR THE GROUP (A): -42.6730 60.7360 -15.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.3598 T22: 0.4632 REMARK 3 T33: 0.5616 T12: -0.1110 REMARK 3 T13: -0.0038 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.1972 L22: 5.5481 REMARK 3 L33: 1.8348 L12: 0.8440 REMARK 3 L13: 0.0090 L23: 0.0459 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0703 S13: 0.0553 REMARK 3 S21: 0.1562 S22: -0.1096 S23: 0.2296 REMARK 3 S31: -0.3173 S32: -0.2420 S33: 0.0590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3L2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27284 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 38.102 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, 4.8% (V/V) 1,6-HEXANEDIOL, 50MM MES-NAOH, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 78.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.13250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 78.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.39750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.13250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 78.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.39750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.26500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 375 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 THR A 382 REMARK 465 ALA A 383 REMARK 465 THR A 384 REMARK 465 MET A 385 REMARK 465 ASP A 386 REMARK 465 HIS A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LYS A 390 REMARK 465 ASN A 391 REMARK 465 GLU A 392 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 CYS B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 TYR B 20 REMARK 465 ILE B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 TYR B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 THR B 29 REMARK 465 TYR B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 GLU B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLY B 44 REMARK 465 VAL B 45 REMARK 465 LYS B 46 REMARK 465 ILE B 47 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 ILE B 57 REMARK 465 VAL B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 HIS B 62 REMARK 465 ASN B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 THR B 72 REMARK 465 LEU B 73 REMARK 465 LEU B 74 REMARK 465 LYS B 75 REMARK 465 ILE B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 78 REMARK 465 LEU B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 TRP B 82 REMARK 465 PRO B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 LYS B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 CYS B 96 REMARK 465 GLN B 97 REMARK 465 GLN B 98 REMARK 465 CYS B 99 REMARK 465 LEU B 100 REMARK 465 ILE B 101 REMARK 465 THR B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 SER B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 PRO B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 ALA B 279 REMARK 465 ASN B 280 REMARK 465 GLN B 281 REMARK 465 ASP B 282 REMARK 465 THR B 283 REMARK 465 LEU B 284 REMARK 465 ASP B 285 REMARK 465 LEU B 286 REMARK 465 THR B 287 REMARK 465 ARG B 288 REMARK 465 GLU B 289 REMARK 465 GLU B 290 REMARK 465 GLU B 291 REMARK 465 LEU B 292 REMARK 465 SER B 293 REMARK 465 LEU B 294 REMARK 465 LEU B 295 REMARK 465 GLN B 296 REMARK 465 GLU B 297 REMARK 465 ILE B 298 REMARK 465 ARG B 299 REMARK 465 THR B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 TYR B 303 REMARK 465 HIS B 304 REMARK 465 PRO B 305 REMARK 465 SER B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 TRP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 VAL B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 465 TRP B 337 REMARK 465 HIS B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 LEU B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 PRO B 349 REMARK 465 ARG B 350 REMARK 465 THR B 351 REMARK 465 VAL B 352 REMARK 465 VAL B 353 REMARK 465 ILE B 354 REMARK 465 LEU B 355 REMARK 465 ASP B 356 REMARK 465 HIS B 357 REMARK 465 LEU B 358 REMARK 465 GLY B 359 REMARK 465 ASN B 360 REMARK 465 ASN B 361 REMARK 465 ARG B 362 REMARK 465 THR B 363 REMARK 465 VAL B 364 REMARK 465 SER B 365 REMARK 465 ILE B 366 REMARK 465 ASP B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 ASN B 376 REMARK 465 GLY B 377 REMARK 465 THR B 378 REMARK 465 THR B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 THR B 382 REMARK 465 ALA B 383 REMARK 465 THR B 384 REMARK 465 MET B 385 REMARK 465 ASP B 386 REMARK 465 HIS B 387 REMARK 465 LEU B 388 REMARK 465 GLU B 389 REMARK 465 LYS B 390 REMARK 465 ASN B 391 REMARK 465 GLU B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 HIS B 213 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 LYS B 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 12 O3' DA D 12 C3' -0.037 REMARK 500 DT D 13 O3' DT D 13 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 2 C4 - C5 - C7 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT C 2 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 2 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 6 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA C 11 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DT C 14 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG C 17 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 11 12.63 -66.54 REMARK 500 GLN A 27 -17.89 114.44 REMARK 500 PHE A 122 -0.35 77.02 REMARK 500 THR A 174 30.24 -76.02 REMARK 500 HIS A 213 88.50 -163.10 REMARK 500 THR A 240 86.73 -67.21 REMARK 500 LYS A 241 64.86 -114.17 REMARK 500 SER A 274 -169.46 -67.80 REMARK 500 ALA A 328 -82.08 -51.64 REMARK 500 ARG A 329 64.60 -117.08 REMARK 500 PRO A 349 2.74 -69.68 REMARK 500 ASP A 356 -145.74 -105.82 REMARK 500 LEU A 358 114.04 -173.42 REMARK 500 THR B 174 31.53 -88.33 REMARK 500 GLN B 186 32.85 -88.57 REMARK 500 TYR B 212 -32.96 86.19 REMARK 500 HIS B 213 72.89 -104.43 REMARK 500 ARG B 238 46.99 -146.37 REMARK 500 LEU B 261 -41.66 81.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 393 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 66 ND1 103.3 REMARK 620 3 CYS A 96 SG 117.3 107.9 REMARK 620 4 CYS A 99 SG 109.9 111.9 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 185 OD1 80.1 REMARK 620 3 ELV A 397 OAG 124.2 81.3 REMARK 620 4 ELV A 397 OAD 73.2 72.3 51.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 395 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 GLU A 221 OE1 78.0 REMARK 620 3 GLU A 221 OE2 71.2 46.7 REMARK 620 4 ELV A 397 OAD 68.0 110.0 64.7 REMARK 620 5 ELV A 397 OAE 124.2 79.2 56.3 73.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELV A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DLR RELATED DB: PDB REMARK 900 CATALYTIC CORE DOMAIN OF PFV IN REMARK 900 RELATED ID: 3L2Q RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 3L2R RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM REMARK 900 RELATED ID: 3L2S RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MANGANESE REMARK 900 RELATED ID: 3L2T RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND MK0518 (RALTEGRAVIR) REMARK 900 RELATED ID: 3L2V RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MANGANESE AND MK0518 (RALTEGRAVIR) REMARK 900 RELATED ID: 3L2W RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MANGANESE AND GS9137 (ELVITEGRAVIR) DBREF 3L2U A 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 3L2U B 1 392 UNP P14350 POL_FOAMV 752 1143 DBREF 3L2U C 1 19 PDB 3L2U 3L2U 1 19 DBREF 3L2U D 1 17 PDB 3L2U 3L2U 1 17 SEQADV 3L2U GLY A -2 UNP P14350 EXPRESSION TAG SEQADV 3L2U PRO A -1 UNP P14350 EXPRESSION TAG SEQADV 3L2U GLY A 0 UNP P14350 EXPRESSION TAG SEQADV 3L2U SER A 217 UNP P14350 GLY 968 VARIANT SEQADV 3L2U GLY A 218 UNP P14350 SER 969 VARIANT SEQADV 3L2U GLY B -2 UNP P14350 EXPRESSION TAG SEQADV 3L2U PRO B -1 UNP P14350 EXPRESSION TAG SEQADV 3L2U GLY B 0 UNP P14350 EXPRESSION TAG SEQADV 3L2U SER B 217 UNP P14350 GLY 968 VARIANT SEQADV 3L2U GLY B 218 UNP P14350 SER 969 VARIANT SEQRES 1 A 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 A 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 A 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 A 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 A 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 A 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 A 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 A 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 A 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 A 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 A 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 A 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 A 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 A 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 A 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 A 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 A 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 A 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 A 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 A 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 A 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 A 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 A 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 A 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 A 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 A 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 A 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 A 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 A 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 A 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 A 395 LEU GLU LYS ASN GLU SEQRES 1 B 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 B 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 B 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 B 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 B 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 B 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 B 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 B 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 B 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 B 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 B 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 B 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 B 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 B 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 B 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 B 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 B 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 B 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 B 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 B 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 B 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 B 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 B 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 B 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 B 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 B 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 B 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 B 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 B 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 B 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 B 395 LEU GLU LYS ASN GLU SEQRES 1 C 19 DA DT DT DG DT DC DA DT DG DG DA DA DT SEQRES 2 C 19 DT DT DT DG DT DA SEQRES 1 D 17 DT DA DC DA DA DA DA DT DT DC DC DA DT SEQRES 2 D 17 DG DA DC DA HET ZN A 393 1 HET MG A 394 1 HET MG A 395 1 HET NH4 A 396 1 HET ELV A 397 31 HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET MG B 393 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM NH4 AMMONIUM ION HETNAM ELV 6-(3-CHLORO-2-FLUOROBENZYL)-1-[(1S)-1-(HYDROXYMETHYL)- HETNAM 2 ELV 2-METHYLPROPYL]-7-METHOXY-4-OXO-1,4-DIHYDROQUINOLINE- HETNAM 3 ELV 3-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN ELV ELVITEGRAVIR; GS9137; JTK 303 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN ZN 2+ FORMUL 6 MG 3(MG 2+) FORMUL 8 NH4 H4 N 1+ FORMUL 9 ELV C23 H23 CL F N O5 FORMUL 10 GOL 4(C3 H8 O3) HELIX 1 1 LEU A 12 GLN A 17 1 6 HELIX 2 2 PRO A 50 LEU A 64 1 15 HELIX 3 3 GLY A 68 TYR A 80 1 13 HELIX 4 4 ASN A 84 GLY A 94 1 11 HELIX 5 5 CYS A 96 ASN A 103 1 8 HELIX 6 6 SER A 162 THR A 174 1 13 HELIX 7 7 GLY A 187 SER A 192 1 6 HELIX 8 8 SER A 192 ARG A 202 1 11 HELIX 9 9 HIS A 213 SER A 216 5 4 HELIX 10 10 SER A 217 LEU A 235 1 19 HELIX 11 11 TRP A 242 ASP A 244 5 3 HELIX 12 12 LEU A 245 ASN A 255 1 11 HELIX 13 13 THR A 264 GLY A 271 1 8 HELIX 14 14 GLN A 281 LEU A 286 5 6 HELIX 15 15 THR A 287 SER A 301 1 15 HELIX 16 16 SER B 162 THR B 174 1 13 HELIX 17 17 SER B 192 GLY B 203 1 12 HELIX 18 18 SER B 217 VAL B 236 1 20 HELIX 19 19 LYS B 241 ASN B 255 1 15 HELIX 20 20 THR B 264 GLY B 271 1 8 SHEET 1 A 3 LEU A 32 GLU A 33 0 SHEET 2 A 3 LYS A 36 ARG A 41 -1 O LYS A 36 N GLU A 33 SHEET 3 A 3 GLY A 44 ILE A 48 -1 O GLY A 44 N ARG A 41 SHEET 1 B 2 ALA A 108 SER A 109 0 SHEET 2 B 2 SER A 314 TRP A 315 1 O TRP A 315 N ALA A 108 SHEET 1 C 5 THR A 153 THR A 158 0 SHEET 2 C 5 TYR A 141 ASP A 147 -1 N TYR A 141 O THR A 158 SHEET 3 C 5 LYS A 124 ILE A 130 -1 N ASP A 128 O VAL A 144 SHEET 4 C 5 VAL A 181 SER A 184 1 O HIS A 183 N PHE A 125 SHEET 5 C 5 HIS A 205 PHE A 208 1 O HIS A 205 N ILE A 182 SHEET 1 D 5 ASN A 361 SER A 365 0 SHEET 2 D 5 THR A 351 LEU A 355 -1 N VAL A 352 O VAL A 364 SHEET 3 D 5 SER A 341 ASN A 348 -1 N LEU A 344 O VAL A 353 SHEET 4 D 5 LEU A 322 GLU A 325 -1 N VAL A 323 O SER A 341 SHEET 5 D 5 LEU A 369 PRO A 371 -1 O LYS A 370 N GLN A 324 SHEET 1 E 5 THR B 153 THR B 158 0 SHEET 2 E 5 TYR B 141 ASP B 147 -1 N LEU B 143 O TYR B 156 SHEET 3 E 5 PHE B 125 ILE B 130 -1 N ASP B 128 O VAL B 144 SHEET 4 E 5 VAL B 181 SER B 184 1 O VAL B 181 N PHE B 125 SHEET 5 E 5 HIS B 205 PHE B 208 1 O GLU B 207 N ILE B 182 LINK NE2 HIS A 62 ZN ZN A 393 1555 1555 1.89 LINK ND1 HIS A 66 ZN ZN A 393 1555 1555 1.99 LINK SG CYS A 96 ZN ZN A 393 1555 1555 2.26 LINK SG CYS A 99 ZN ZN A 393 1555 1555 2.15 LINK OD1 ASP A 128 MG MG A 394 1555 1555 1.99 LINK OD2 ASP A 128 MG MG A 395 1555 1555 2.25 LINK OD1 ASP A 185 MG MG A 394 1555 1555 2.42 LINK OE1 GLU A 221 MG MG A 395 1555 1555 2.28 LINK OE2 GLU A 221 MG MG A 395 1555 1555 2.94 LINK MG MG A 394 OAG ELV A 397 1555 1555 2.42 LINK MG MG A 394 OAD ELV A 397 1555 1555 2.63 LINK MG MG A 395 OAD ELV A 397 1555 1555 2.36 LINK MG MG A 395 OAE ELV A 397 1555 1555 2.50 LINK OD1 ASP B 128 MG MG B 393 1555 1555 2.83 CISPEP 1 GLY A 131 PRO A 132 0 17.62 CISPEP 2 HIS A 357 LEU A 358 0 -8.01 CISPEP 3 LEU A 358 GLY A 359 0 -2.70 CISPEP 4 GLY B 131 PRO B 132 0 11.74 SITE 1 AC1 4 HIS A 62 HIS A 66 CYS A 96 CYS A 99 SITE 1 AC2 3 ASP A 128 ASP A 185 ELV A 397 SITE 1 AC3 4 ASP A 128 GLU A 221 ASN A 224 ELV A 397 SITE 1 AC4 3 ASP B 128 ASP B 185 DA C 19 SITE 1 AC5 1 ASP A 116 SITE 1 AC6 10 ASP A 128 ASP A 185 TYR A 212 PRO A 214 SITE 2 AC6 10 GLU A 221 MG A 394 MG A 395 DG C 4 SITE 3 AC6 10 DC D 16 DA D 17 SITE 1 AC7 3 SER A 136 GLN A 137 LYS A 241 SITE 1 AC8 3 GLN A 186 THR A 191 PHE A 208 SITE 1 AC9 3 HIS A 338 LYS A 339 HIS A 357 SITE 1 BC1 3 SER A 162 THR A 163 SER A 164 CRYST1 157.100 157.100 124.530 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008030 0.00000