PDB Short entry for 3L9Q HEADER TRANSFERASE 05-JAN-10 3L9Q TITLE CRYSTAL STRUCTURE OF HUMAN POLYMERASE ALPHA-PRIMASE P58 IRON-SULFUR TITLE 2 CLUSTER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE LARGE SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IRON-SULFUR CLUSTER DOMAIN (UNP RESIDUES 272-464); COMPND 5 SYNONYM: DNA PRIMASE 58 KDA SUBUNIT, P58; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIM2, PRIM2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POL ALPHA, PRIMASE, DNA REPLICATION, POLYMERASE, IRON-SULFUR CLUSTER, KEYWDS 2 DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, IRON, IRON-SULFUR, METAL- KEYWDS 3 BINDING, NUCLEOTIDYLTRANSFERASE, PHOSPHOPROTEIN, PRIMOSOME, KEYWDS 4 TRANSCRIPTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.VAITHIYALINGAM,B.F.EICHMAN,W.J.CHAZIN REVDAT 3 16-NOV-11 3L9Q 1 VERSN HETATM REVDAT 2 18-AUG-10 3L9Q 1 JRNL REVDAT 1 14-JUL-10 3L9Q 0 JRNL AUTH S.VAITHIYALINGAM,E.M.WARREN,B.F.EICHMAN,W.J.CHAZIN JRNL TITL INSIGHTS INTO EUKARYOTIC DNA PRIMING FROM THE STRUCTURE AND JRNL TITL 2 FUNCTIONAL INTERACTIONS OF THE 4FE-4S CLUSTER DOMAIN OF JRNL TITL 3 HUMAN DNA PRIMASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 13684 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20643958 JRNL DOI 10.1073/PNAS.1002009107 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 2009_02_15_2320_3) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 49670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3304 - 4.4481 0.97 2699 162 0.1657 0.1772 REMARK 3 2 4.4481 - 3.5314 1.00 2733 149 0.1230 0.1464 REMARK 3 3 3.5314 - 3.0853 1.00 2728 125 0.1329 0.1809 REMARK 3 4 3.0853 - 2.8033 1.00 2718 136 0.1423 0.1833 REMARK 3 5 2.8033 - 2.6024 1.00 2704 139 0.1381 0.1711 REMARK 3 6 2.6024 - 2.4490 1.00 2702 147 0.1300 0.1823 REMARK 3 7 2.4490 - 2.3264 1.00 2694 150 0.1173 0.1685 REMARK 3 8 2.3264 - 2.2251 1.00 2679 132 0.1117 0.1657 REMARK 3 9 2.2251 - 2.1395 1.00 2712 152 0.1000 0.1448 REMARK 3 10 2.1395 - 2.0657 1.00 2669 132 0.1003 0.1446 REMARK 3 11 2.0657 - 2.0011 1.00 2692 144 0.0992 0.1628 REMARK 3 12 2.0011 - 1.9439 1.00 2687 150 0.1054 0.1451 REMARK 3 13 1.9439 - 1.8927 1.00 2618 164 0.1047 0.1633 REMARK 3 14 1.8927 - 1.8465 0.99 2643 137 0.1051 0.1650 REMARK 3 15 1.8465 - 1.8046 0.96 2619 117 0.1053 0.1688 REMARK 3 16 1.8046 - 1.7662 0.92 2451 126 0.1022 0.1360 REMARK 3 17 1.7662 - 1.7308 0.87 2321 120 0.1059 0.1627 REMARK 3 18 1.7308 - 1.6982 0.79 2105 114 0.1150 0.1923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 70.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2956 REMARK 3 ANGLE : 0.920 4005 REMARK 3 CHIRALITY : 0.072 412 REMARK 3 PLANARITY : 0.004 513 REMARK 3 DIHEDRAL : 17.948 1109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB057010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 15% PEG 3250, 0.2 M REMARK 280 LISO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.72050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.72050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 473 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 330 REMARK 465 PHE A 331 REMARK 465 ILE A 332 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 LYS A 335 REMARK 465 MET A 336 REMARK 465 ASP A 337 REMARK 465 PRO A 338 REMARK 465 ASP A 339 REMARK 465 LYS A 340 REMARK 465 GLY A 354 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 GLY A 357 REMARK 465 LYS A 358 REMARK 465 ARG A 359 REMARK 465 GLY A 458 REMARK 465 LYS A 459 REMARK 465 ASP A 460 REMARK 465 ILE A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 GLU A 464 REMARK 465 ASN B 270 REMARK 465 SER B 271 REMARK 465 ILE B 332 REMARK 465 LYS B 333 REMARK 465 GLY B 334 REMARK 465 LYS B 335 REMARK 465 MET B 336 REMARK 465 ASP B 337 REMARK 465 PRO B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 PHE B 341 REMARK 465 ASP B 342 REMARK 465 LYS B 343 REMARK 465 GLY B 344 REMARK 465 TYR B 345 REMARK 465 GLY B 354 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 GLY B 357 REMARK 465 LYS B 358 REMARK 465 GLY B 458 REMARK 465 LYS B 459 REMARK 465 ASP B 460 REMARK 465 ILE B 461 REMARK 465 LYS B 462 REMARK 465 LYS B 463 REMARK 465 GLU B 464 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 426 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 442 15.37 -146.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 479 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 497 DISTANCE = 7.45 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SO4 B 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 500 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 287 SG REMARK 620 2 SF4 A 500 S1 114.7 REMARK 620 3 SF4 A 500 S2 119.0 104.5 REMARK 620 4 SF4 A 500 S3 106.3 106.6 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 500 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 287 SG REMARK 620 2 SF4 B 500 S1 106.4 REMARK 620 3 SF4 B 500 S2 114.4 106.6 REMARK 620 4 SF4 B 500 S3 119.4 104.6 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 500 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 384 SG REMARK 620 2 SF4 B 500 S1 112.0 REMARK 620 3 SF4 B 500 S2 112.4 106.6 REMARK 620 4 SF4 B 500 S4 117.2 104.5 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 500 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 367 SG REMARK 620 2 SF4 A 500 S1 121.0 REMARK 620 3 SF4 A 500 S2 103.2 104.6 REMARK 620 4 SF4 A 500 S4 117.3 103.6 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 424 SG REMARK 620 2 SF4 B 500 S1 115.1 REMARK 620 3 SF4 B 500 S3 115.7 104.5 REMARK 620 4 SF4 B 500 S4 111.1 104.3 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 SF4 A 500 S2 115.7 REMARK 620 3 SF4 A 500 S3 114.6 104.9 REMARK 620 4 SF4 A 500 S4 110.0 105.3 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 367 SG REMARK 620 2 SF4 B 500 S2 119.5 REMARK 620 3 SF4 B 500 S3 105.3 104.6 REMARK 620 4 SF4 B 500 S4 117.4 103.3 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 384 SG REMARK 620 2 SF4 A 500 S1 112.1 REMARK 620 3 SF4 A 500 S3 111.6 106.3 REMARK 620 4 SF4 A 500 S4 117.1 103.8 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 505 DBREF 3L9Q A 272 464 UNP P49643 PRI2_HUMAN 272 464 DBREF 3L9Q B 272 464 UNP P49643 PRI2_HUMAN 272 464 SEQADV 3L9Q ASN A 270 UNP P49643 EXPRESSION TAG SEQADV 3L9Q SER A 271 UNP P49643 EXPRESSION TAG SEQADV 3L9Q ASN B 270 UNP P49643 EXPRESSION TAG SEQADV 3L9Q SER B 271 UNP P49643 EXPRESSION TAG SEQRES 1 A 195 ASN SER SER LEU ASP GLN ILE ASP LEU LEU SER THR LYS SEQRES 2 A 195 SER PHE PRO PRO CYS MET ARG GLN LEU HIS LYS ALA LEU SEQRES 3 A 195 ARG GLU ASN HIS HIS LEU ARG HIS GLY GLY ARG MET GLN SEQRES 4 A 195 TYR GLY LEU PHE LEU LYS GLY ILE GLY LEU THR LEU GLU SEQRES 5 A 195 GLN ALA LEU GLN PHE TRP LYS GLN GLU PHE ILE LYS GLY SEQRES 6 A 195 LYS MET ASP PRO ASP LYS PHE ASP LYS GLY TYR SER TYR SEQRES 7 A 195 ASN ILE ARG HIS SER PHE GLY LYS GLU GLY LYS ARG THR SEQRES 8 A 195 ASP TYR THR PRO PHE SER CYS LEU LYS ILE ILE LEU SER SEQRES 9 A 195 ASN PRO PRO SER GLN GLY ASP TYR HIS GLY CYS PRO PHE SEQRES 10 A 195 ARG HIS SER ASP PRO GLU LEU LEU LYS GLN LYS LEU GLN SEQRES 11 A 195 SER TYR LYS ILE SER PRO GLY GLY ILE SER GLN ILE LEU SEQRES 12 A 195 ASP LEU VAL LYS GLY THR HIS TYR GLN VAL ALA CYS GLN SEQRES 13 A 195 LYS TYR PHE GLU MET ILE HIS ASN VAL ASP ASP CYS GLY SEQRES 14 A 195 PHE SER LEU ASN HIS PRO ASN GLN PHE PHE CYS GLU SER SEQRES 15 A 195 GLN ARG ILE LEU ASN GLY GLY LYS ASP ILE LYS LYS GLU SEQRES 1 B 195 ASN SER SER LEU ASP GLN ILE ASP LEU LEU SER THR LYS SEQRES 2 B 195 SER PHE PRO PRO CYS MET ARG GLN LEU HIS LYS ALA LEU SEQRES 3 B 195 ARG GLU ASN HIS HIS LEU ARG HIS GLY GLY ARG MET GLN SEQRES 4 B 195 TYR GLY LEU PHE LEU LYS GLY ILE GLY LEU THR LEU GLU SEQRES 5 B 195 GLN ALA LEU GLN PHE TRP LYS GLN GLU PHE ILE LYS GLY SEQRES 6 B 195 LYS MET ASP PRO ASP LYS PHE ASP LYS GLY TYR SER TYR SEQRES 7 B 195 ASN ILE ARG HIS SER PHE GLY LYS GLU GLY LYS ARG THR SEQRES 8 B 195 ASP TYR THR PRO PHE SER CYS LEU LYS ILE ILE LEU SER SEQRES 9 B 195 ASN PRO PRO SER GLN GLY ASP TYR HIS GLY CYS PRO PHE SEQRES 10 B 195 ARG HIS SER ASP PRO GLU LEU LEU LYS GLN LYS LEU GLN SEQRES 11 B 195 SER TYR LYS ILE SER PRO GLY GLY ILE SER GLN ILE LEU SEQRES 12 B 195 ASP LEU VAL LYS GLY THR HIS TYR GLN VAL ALA CYS GLN SEQRES 13 B 195 LYS TYR PHE GLU MET ILE HIS ASN VAL ASP ASP CYS GLY SEQRES 14 B 195 PHE SER LEU ASN HIS PRO ASN GLN PHE PHE CYS GLU SER SEQRES 15 B 195 GLN ARG ILE LEU ASN GLY GLY LYS ASP ILE LYS LYS GLU HET SF4 A 500 8 HET SO4 A 502 5 HET SF4 B 500 8 HET SO4 B 501 5 HET SO4 B 503 5 HET SO4 B 504 4 HET SO4 B 505 5 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SO4 SULFATE ION FORMUL 3 SF4 2(FE4 S4) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 HOH *440(H2 O) HELIX 1 1 ILE A 276 PHE A 284 1 9 HELIX 2 2 PRO A 285 HIS A 299 1 15 HELIX 3 3 ARG A 302 GLY A 317 1 16 HELIX 4 4 SER A 366 SER A 373 1 8 HELIX 5 5 CYS A 384 SER A 389 1 6 HELIX 6 6 ASP A 390 TYR A 401 1 12 HELIX 7 7 SER A 404 GLY A 417 1 14 HELIX 8 8 HIS A 419 ASN A 433 1 15 HELIX 9 9 HIS A 443 ASN A 456 1 14 HELIX 10 10 SER B 272 GLN B 275 5 4 HELIX 11 11 ILE B 276 PHE B 284 1 9 HELIX 12 12 PRO B 285 HIS B 299 1 15 HELIX 13 13 ARG B 302 ILE B 316 1 15 HELIX 14 14 SER B 366 SER B 373 1 8 HELIX 15 15 CYS B 384 SER B 389 1 6 HELIX 16 16 ASP B 390 TYR B 401 1 12 HELIX 17 17 SER B 404 GLY B 417 1 14 HELIX 18 18 HIS B 419 ASN B 433 1 15 HELIX 19 19 HIS B 443 ASN B 456 1 14 SHEET 1 A 3 SER A 271 SER A 272 0 SHEET 2 A 3 TYR A 345 HIS A 351 -1 O ILE A 349 N SER A 271 SHEET 3 A 3 LEU A 318 LEU A 324 -1 N THR A 319 O ARG A 350 SHEET 1 B 2 LEU B 318 GLN B 322 0 SHEET 2 B 2 TYR B 347 HIS B 351 -1 O ASN B 348 N GLU B 321 SSBOND 1 CYS A 449 CYS B 449 1555 1555 2.06 LINK SG CYS A 287 FE4 SF4 A 500 1555 1555 2.30 LINK SG CYS B 287 FE4 SF4 B 500 1555 1555 2.30 LINK SG CYS B 384 FE3 SF4 B 500 1555 1555 2.32 LINK SG CYS A 367 FE3 SF4 A 500 1555 1555 2.32 LINK SG CYS B 424 FE2 SF4 B 500 1555 1555 2.32 LINK SG CYS A 424 FE1 SF4 A 500 1555 1555 2.34 LINK SG CYS B 367 FE1 SF4 B 500 1555 1555 2.34 LINK SG CYS A 384 FE2 SF4 A 500 1555 1555 2.34 SITE 1 AC1 5 PRO A 285 CYS A 287 CYS A 367 CYS A 384 SITE 2 AC1 5 CYS A 424 SITE 1 AC2 5 HOH A 37 THR A 281 ARG A 289 LYS A 293 SITE 2 AC2 5 HOH A 514 SITE 1 AC3 6 PRO B 285 CYS B 287 CYS B 367 CYS B 384 SITE 2 AC3 6 CYS B 424 PRO B 444 SITE 1 AC4 8 HOH A 196 ARG A 302 HIS A 303 ARG A 306 SITE 2 AC4 8 GLN B 329 GLU B 330 PHE B 331 HOH B 471 SITE 1 AC5 6 HOH B 109 ARG B 289 LYS B 293 HOH B 480 SITE 2 AC5 6 HOH B 502 HOH B 523 SITE 1 AC6 5 HOH B 150 HIS B 300 ARG B 302 HIS B 303 SITE 2 AC6 5 ARG B 306 SITE 1 AC7 6 SER A 346 LYS B 314 THR B 319 ARG B 350 SITE 2 AC7 6 SER B 352 PHE B 353 CRYST1 109.441 53.050 88.844 90.00 115.09 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009137 0.000000 0.004278 0.00000 SCALE2 0.000000 0.018850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012428 0.00000