PDB Short entry for 3LK1 HEADER METAL BINDING PROTEIN 26-JAN-10 3LK1 TITLE X-RAY STRUCTURE OF BOVINE SC0322,CA(2+)-S100B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN B, S-100 PROTEIN SUBUNIT BETA, COMPND 5 S-100 PROTEIN BETA CHAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: S100B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS EF HAND, ALPHA HELICAL, METAL-BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHARPENTIER,D.J.WEBER,P.W.WILDER REVDAT 3 21-FEB-24 3LK1 1 REMARK LINK REVDAT 2 01-NOV-17 3LK1 1 REMARK REVDAT 1 29-DEC-10 3LK1 0 JRNL AUTH P.T.WILDER,T.H.CHARPENTIER,M.A.LIRIANO,K.GIANNI,K.M.VARNEY, JRNL AUTH 2 E.POZHARSKI,A.COOP,E.A.TOTH,A.D.MACKERELL,D.J.WEBER JRNL TITL IN VITRO SCREENING AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 INHIBITORS OF THE S100B-P53 INTERACTION. JRNL REF INT J HIGH THROUGHPUT SCREEN V.2010 109 2010 JRNL REFN ESSN 1179-1381 JRNL PMID 21132089 JRNL DOI 10.2147/IJHTS.S8210 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 7593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 30.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -2.44000 REMARK 3 B33 (A**2) : 2.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 716 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 958 ; 1.427 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 87 ; 8.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;31.557 ;26.389 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 133 ;14.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;21.691 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 106 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 535 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 334 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 495 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 38 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.187 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 451 ; 0.558 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 697 ; 0.806 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 295 ; 1.497 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 261 ; 2.285 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1750 -5.8918 2.5575 REMARK 3 T TENSOR REMARK 3 T11: -0.1546 T22: -0.1674 REMARK 3 T33: 0.1036 T12: -0.0056 REMARK 3 T13: -0.0391 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 10.4199 L22: 63.1761 REMARK 3 L33: 24.2491 L12: -7.0713 REMARK 3 L13: 7.1293 L23: -4.1961 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.1335 S13: 0.8244 REMARK 3 S21: -1.2259 S22: 0.5578 S23: -1.8171 REMARK 3 S31: 0.6508 S32: 1.1627 S33: -0.4185 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6632 5.4507 6.5898 REMARK 3 T TENSOR REMARK 3 T11: -0.0171 T22: -0.1349 REMARK 3 T33: -0.0641 T12: -0.0202 REMARK 3 T13: -0.0876 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.1629 L22: 52.5880 REMARK 3 L33: 3.7101 L12: -12.6881 REMARK 3 L13: -2.8727 L23: 12.8878 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: -0.4643 S13: -0.2821 REMARK 3 S21: 0.8167 S22: 0.5415 S23: -0.5451 REMARK 3 S31: -0.0712 S32: 0.5447 S33: -0.3600 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5622 16.2905 4.8908 REMARK 3 T TENSOR REMARK 3 T11: -0.1338 T22: -0.2019 REMARK 3 T33: -0.1562 T12: -0.0141 REMARK 3 T13: -0.0194 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 7.3057 L22: 5.7084 REMARK 3 L33: 8.4656 L12: 0.0507 REMARK 3 L13: -2.8456 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: -0.4458 S13: 0.2407 REMARK 3 S21: 0.5760 S22: 0.0029 S23: -0.1921 REMARK 3 S31: -0.4530 S32: 0.0761 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9824 16.9433 -5.1511 REMARK 3 T TENSOR REMARK 3 T11: -0.1452 T22: -0.1820 REMARK 3 T33: -0.1397 T12: -0.0151 REMARK 3 T13: -0.0226 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 7.0948 L22: 6.4506 REMARK 3 L33: 5.3708 L12: -1.2560 REMARK 3 L13: -2.2138 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.2390 S13: -0.0567 REMARK 3 S21: -0.4155 S22: -0.1176 S23: 0.4114 REMARK 3 S31: -0.1392 S32: -0.0565 S33: 0.0787 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6618 8.3837 3.4370 REMARK 3 T TENSOR REMARK 3 T11: -0.1642 T22: -0.1923 REMARK 3 T33: 0.0041 T12: -0.0208 REMARK 3 T13: 0.0735 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 6.0901 L22: 13.6623 REMARK 3 L33: 8.5956 L12: -2.6569 REMARK 3 L13: -2.9671 L23: 4.3755 REMARK 3 S TENSOR REMARK 3 S11: -0.1949 S12: -0.3747 S13: -0.3042 REMARK 3 S21: 0.7250 S22: 0.2616 S23: 0.7156 REMARK 3 S31: 0.0859 S32: 0.0913 S33: -0.0667 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0756 1.9937 -11.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.0295 REMARK 3 T33: 0.1874 T12: -0.1781 REMARK 3 T13: 0.0393 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 25.3815 L22: 4.2670 REMARK 3 L33: 29.9287 L12: 6.3681 REMARK 3 L13: -18.7978 L23: 1.8202 REMARK 3 S TENSOR REMARK 3 S11: -1.2537 S12: 2.0040 S13: -0.6077 REMARK 3 S21: -1.7978 S22: 0.8577 S23: -0.0382 REMARK 3 S31: 0.8231 S32: -1.0268 S33: 0.3960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97607 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEGMME550, CACL2, MGCL2, SC0322, HEPES REMARK 280 BUFFER, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.49800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.49800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.59700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.39600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.59700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.39600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.49800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.59700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.39600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.49800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.59700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.39600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 88 REMARK 465 GLU A 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 5 NZ REMARK 470 LYS A 26 CE NZ REMARK 470 LYS A 28 CE NZ REMARK 470 GLU A 45 CD OE1 OE2 REMARK 470 GLN A 71 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 87 C PHE A 87 O 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 4.26 -65.05 REMARK 500 CYS A 84 12.32 -166.18 REMARK 500 HIS A 85 74.58 -49.91 REMARK 500 GLU A 86 -49.45 -178.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 84 HIS A 85 65.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 91 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 GLU A 21 O 106.2 REMARK 620 3 ASP A 23 O 78.3 84.5 REMARK 620 4 LYS A 26 O 86.7 159.8 83.0 REMARK 620 5 GLU A 31 OE1 99.9 115.2 159.5 76.6 REMARK 620 6 GLU A 31 OE2 80.1 76.1 145.5 122.2 51.5 REMARK 620 7 HOH A 120 O 170.2 79.6 94.7 85.6 84.2 109.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 90 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 63 OD1 82.9 REMARK 620 3 ASP A 65 OD1 82.3 82.7 REMARK 620 4 GLU A 67 O 83.1 160.3 81.9 REMARK 620 5 GLU A 72 OE1 111.0 120.9 153.3 77.2 REMARK 620 6 GLU A 72 OE2 90.8 72.1 154.5 121.8 51.5 REMARK 620 7 HOH A 105 O 162.6 89.4 81.3 100.2 86.3 101.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC A 92 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 84 SG REMARK 620 2 EMC A 92 C1 96.6 REMARK 620 3 HOH A 126 O 127.8 79.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 90 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JKE A 93 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LK0 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF BOVINE SC0067,CA(2+)-S100B DBREF 3LK1 A 0 89 UNP P02638 S100B_BOVIN 1 90 SEQRES 1 A 90 MET SER GLU LEU GLU LYS ALA VAL VAL ALA LEU ILE ASP SEQRES 2 A 90 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 A 90 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 A 90 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 A 90 VAL VAL ASP LYS VAL MET GLU THR LEU ASP SER ASP GLY SEQRES 6 A 90 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 A 90 ALA MET ILE THR THR ALA CYS HIS GLU PHE PHE GLU HET CA A 90 1 HET CA A 91 1 HET EMC A 92 3 HET JKE A 93 10 HETNAM CA CALCIUM ION HETNAM EMC ETHYL MERCURY ION HETNAM JKE 2-SULFANYLBENZOIC ACID FORMUL 2 CA 2(CA 2+) FORMUL 4 EMC C2 H5 HG 1+ FORMUL 5 JKE C7 H6 O2 S FORMUL 6 HOH *47(H2 O) HELIX 1 1 SER A 1 GLY A 19 1 19 HELIX 2 2 LYS A 28 LEU A 40 1 13 HELIX 3 3 GLU A 49 ASP A 61 1 13 HELIX 4 4 PHE A 70 ALA A 83 1 14 SHEET 1 A 2 LYS A 26 LEU A 27 0 SHEET 2 A 2 CYS A 68 ASP A 69 -1 O CYS A 68 N LEU A 27 LINK O SER A 18 CA CA A 91 1555 1555 2.34 LINK O GLU A 21 CA CA A 91 1555 1555 2.36 LINK O ASP A 23 CA CA A 91 1555 1555 2.38 LINK O LYS A 26 CA CA A 91 1555 1555 2.47 LINK OE1 GLU A 31 CA CA A 91 1555 1555 2.32 LINK OE2 GLU A 31 CA CA A 91 1555 1555 2.61 LINK OD1 ASP A 61 CA CA A 90 1555 1555 2.23 LINK OD1 ASP A 63 CA CA A 90 1555 1555 2.47 LINK OD1 ASP A 65 CA CA A 90 1555 1555 2.32 LINK O GLU A 67 CA CA A 90 1555 1555 2.34 LINK OE1 GLU A 72 CA CA A 90 1555 1555 2.46 LINK OE2 GLU A 72 CA CA A 90 1555 1555 2.57 LINK SG CYS A 84 HG EMC A 92 1555 1555 2.72 LINK CA CA A 90 O HOH A 105 1555 1555 2.15 LINK CA CA A 91 O HOH A 120 1555 1555 2.45 LINK HG EMC A 92 O HOH A 126 1555 1555 2.79 SITE 1 AC1 6 ASP A 61 ASP A 63 ASP A 65 GLU A 67 SITE 2 AC1 6 GLU A 72 HOH A 105 SITE 1 AC2 6 SER A 18 GLU A 21 ASP A 23 LYS A 26 SITE 2 AC2 6 GLU A 31 HOH A 120 SITE 1 AC3 3 CYS A 84 PHE A 87 HOH A 126 SITE 1 AC4 1 THR A 59 CRYST1 35.194 88.792 58.996 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016950 0.00000