PDB Short entry for 3LK2 HEADER PROTEIN BINDING 27-JAN-10 3LK2 TITLE CRYSTAL STRUCTURE OF CAPZ BOUND TO THE UNCAPPING MOTIF FROM CARMIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAPZ 36/32, BETA-ACTININ SUBUNIT I; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: F-ACTIN-CAPPING PROTEIN SUBUNIT BETA ISOFORMS 1 AND 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CAPZ B1 AND B2, CAPZ 36/32, BETA-ACTININ SUBUNIT II; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16A; COMPND 13 CHAIN: T; COMPND 14 FRAGMENT: CPI, CAPPING PROTEIN INTERACTING MOTIF; COMPND 15 SYNONYM: CARMIL HOMOLOG; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CAPZA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: CHICKEN; SOURCE 14 ORGANISM_TAXID: 9031; SOURCE 15 GENE: CAPZB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 24 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN) KEYWDS CAPZ, CARMIL, ACTIN FILAMENTS, UNCAPPING, ACTIN-FILAMENT REGULATORS, KEYWDS 2 PROTEIN-PROTEIN COMPLEX, ACTIN CAPPING, ACTIN-BINDING, CYTOSKELETON, KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.HERNANDEZ-VALLADARES,T.KIM,B.KANNAN,A.TUNG,A.H.AGUDA,M.LARSSON, AUTHOR 2 J.A.COOPER,R.C.ROBINSON REVDAT 4 01-NOV-23 3LK2 1 REMARK REVDAT 3 18-DEC-19 3LK2 1 JRNL REVDAT 2 13-JUL-11 3LK2 1 VERSN REVDAT 1 07-APR-10 3LK2 0 JRNL AUTH M.HERNANDEZ-VALLADARES,T.KIM,B.KANNAN,A.TUNG,A.H.AGUDA, JRNL AUTH 2 M.LARSSON,J.A.COOPER,R.C.ROBINSON JRNL TITL STRUCTURAL CHARACTERIZATION OF A CAPPING PROTEIN INTERACTION JRNL TITL 2 MOTIF DEFINES A FAMILY OF ACTIN FILAMENT REGULATORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 497 2010 JRNL REFN ESSN 1545-9985 JRNL PMID 20357771 JRNL DOI 10.1038/NSMB.1792 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4461 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6030 ; 1.361 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 6.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;38.044 ;24.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;18.520 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3404 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2715 ; 0.606 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4389 ; 1.183 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1746 ; 2.054 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1641 ; 3.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7723 9.6819 59.5338 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1354 REMARK 3 T33: 0.0971 T12: 0.0859 REMARK 3 T13: 0.0139 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.7115 L22: 1.7604 REMARK 3 L33: 0.8920 L12: 0.7676 REMARK 3 L13: 0.3293 L23: -0.1327 REMARK 3 S TENSOR REMARK 3 S11: 0.1464 S12: 0.0355 S13: -0.1976 REMARK 3 S21: -0.1071 S22: -0.0850 S23: 0.1347 REMARK 3 S31: 0.1997 S32: -0.1155 S33: -0.0614 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0144 36.6357 55.7395 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1214 REMARK 3 T33: 0.0584 T12: 0.0705 REMARK 3 T13: 0.0606 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.7791 L22: 2.1035 REMARK 3 L33: 1.1607 L12: 1.1253 REMARK 3 L13: 0.1641 L23: -0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.1631 S13: 0.0593 REMARK 3 S21: -0.2659 S22: 0.0488 S23: -0.0687 REMARK 3 S31: -0.1201 S32: 0.0824 S33: 0.0396 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 970 T 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6275 36.3971 51.2431 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2448 REMARK 3 T33: 0.2368 T12: 0.1554 REMARK 3 T13: -0.0301 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 6.2004 L22: 5.6543 REMARK 3 L33: 2.2334 L12: 3.3973 REMARK 3 L13: -1.0940 L23: -2.1713 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.6501 S13: 0.2649 REMARK 3 S21: -0.4115 S22: 0.1646 S23: 0.6691 REMARK 3 S31: 0.0528 S32: -0.2013 S33: -0.0757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : PHOSPHOR SCREEN, FIBER-OPTIC REMARK 200 TAPER AND CCD CHIP REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 20000, 100MM MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 277 REMARK 465 LYS A 278 REMARK 465 ILE A 279 REMARK 465 GLY A 280 REMARK 465 LYS A 281 REMARK 465 GLU A 282 REMARK 465 MET A 283 REMARK 465 GLN A 284 REMARK 465 ASN A 285 REMARK 465 ALA A 286 REMARK 465 MET B 1 REMARK 465 LEU T 961 REMARK 465 ARG T 962 REMARK 465 GLN T 963 REMARK 465 GLU T 964 REMARK 465 LYS T 965 REMARK 465 ARG T 966 REMARK 465 SER T 967 REMARK 465 SER T 968 REMARK 465 GLY T 969 REMARK 465 VAL T 1003 REMARK 465 CYS T 1004 REMARK 465 ALA T 1005 REMARK 465 ALA T 1006 REMARK 465 ASN T 1007 REMARK 465 ILE T 1008 REMARK 465 VAL T 1009 REMARK 465 SER T 1010 REMARK 465 GLN T 1011 REMARK 465 ASP T 1012 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 337 O HOH B 365 1.84 REMARK 500 OD1 ASP B 105 NH1 ARG B 108 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 51 O ILE T 971 1655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 114 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 56.20 39.49 REMARK 500 THR A 113 -79.37 -113.14 REMARK 500 GLU A 114 4.53 83.40 REMARK 500 TYR A 199 26.41 -145.87 REMARK 500 SER A 219 -119.94 -126.88 REMARK 500 THR A 253 -65.00 -125.88 REMARK 500 LEU A 258 -70.82 -97.45 REMARK 500 ARG A 266 47.49 34.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 114 SER A 115 -134.11 REMARK 500 SER A 115 ALA A 116 -58.98 REMARK 500 ALA A 116 LEU A 117 148.88 REMARK 500 THR B 182 GLY B 183 -31.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IZN RELATED DB: PDB REMARK 900 UNCOMPLEXED PROTEIN DBREF 3LK2 A 1 286 UNP P13127 CAZA1_CHICK 1 286 DBREF 3LK2 B 1 243 UNP P14315 CAPZB_CHICK 1 243 DBREF 3LK2 T 961 1012 UNP Q5VZK9 LR16A_HUMAN 961 1012 SEQRES 1 A 286 MET ALA ASP PHE GLU ASP ARG VAL SER ASP GLU GLU LYS SEQRES 2 A 286 VAL ARG ILE ALA ALA LYS PHE ILE THR HIS ALA PRO PRO SEQRES 3 A 286 GLY GLU PHE ASN GLU VAL PHE ASN ASP VAL ARG LEU LEU SEQRES 4 A 286 LEU ASN ASN ASP ASN LEU LEU ARG GLU GLY ALA ALA HIS SEQRES 5 A 286 ALA PHE ALA GLN TYR ASN MET ASP GLN PHE THR PRO VAL SEQRES 6 A 286 LYS ILE GLU GLY TYR ASP ASP GLN VAL LEU ILE THR GLU SEQRES 7 A 286 HIS GLY ASP LEU GLY ASN GLY ARG PHE LEU ASP PRO ARG SEQRES 8 A 286 ASN LYS ILE SER PHE LYS PHE ASP HIS LEU ARG LYS GLU SEQRES 9 A 286 ALA SER ASP PRO GLN PRO GLU ASP THR GLU SER ALA LEU SEQRES 10 A 286 LYS GLN TRP ARG ASP ALA CYS ASP SER ALA LEU ARG ALA SEQRES 11 A 286 TYR VAL LYS ASP HIS TYR PRO ASN GLY PHE CYS THR VAL SEQRES 12 A 286 TYR GLY LYS SER ILE ASP GLY GLN GLN THR ILE ILE ALA SEQRES 13 A 286 CYS ILE GLU SER HIS GLN PHE GLN PRO LYS ASN PHE TRP SEQRES 14 A 286 ASN GLY ARG TRP ARG SER GLU TRP LYS PHE THR ILE THR SEQRES 15 A 286 PRO PRO THR ALA GLN VAL ALA ALA VAL LEU LYS ILE GLN SEQRES 16 A 286 VAL HIS TYR TYR GLU ASP GLY ASN VAL GLN LEU VAL SER SEQRES 17 A 286 HIS LYS ASP ILE GLN ASP SER VAL GLN VAL SER SER ASP SEQRES 18 A 286 VAL GLN THR ALA LYS GLU PHE ILE LYS ILE ILE GLU ASN SEQRES 19 A 286 ALA GLU ASN GLU TYR GLN THR ALA ILE SER GLU ASN TYR SEQRES 20 A 286 GLN THR MET SER ASP THR THR PHE LYS ALA LEU ARG ARG SEQRES 21 A 286 GLN LEU PRO VAL THR ARG THR LYS ILE ASP TRP ASN LYS SEQRES 22 A 286 ILE LEU SER TYR LYS ILE GLY LYS GLU MET GLN ASN ALA SEQRES 1 B 243 MET SER ASP GLN GLN LEU ASP CYS ALA LEU ASP LEU MET SEQRES 2 B 243 ARG ARG LEU PRO PRO GLN GLN ILE GLU LYS ASN LEU SER SEQRES 3 B 243 ASP LEU ILE ASP LEU VAL PRO SER LEU CYS GLU ASP LEU SEQRES 4 B 243 LEU SER SER VAL ASP GLN PRO LEU LYS ILE ALA ARG ASP SEQRES 5 B 243 LYS VAL VAL GLY LYS ASP TYR LEU LEU CYS ASP TYR ASN SEQRES 6 B 243 ARG ASP GLY ASP SER TYR ARG SER PRO TRP SER ASN LYS SEQRES 7 B 243 TYR ASP PRO PRO LEU GLU ASP GLY ALA MET PRO SER ALA SEQRES 8 B 243 ARG LEU ARG LYS LEU GLU VAL GLU ALA ASN ASN ALA PHE SEQRES 9 B 243 ASP GLN TYR ARG ASP LEU TYR PHE GLU GLY GLY VAL SER SEQRES 10 B 243 SER VAL TYR LEU TRP ASP LEU ASP HIS GLY PHE ALA GLY SEQRES 11 B 243 VAL ILE LEU ILE LYS LYS ALA GLY ASP GLY SER LYS LYS SEQRES 12 B 243 ILE LYS GLY CYS TRP ASP SER ILE HIS VAL VAL GLU VAL SEQRES 13 B 243 GLN GLU LYS SER SER GLY ARG THR ALA HIS TYR LYS LEU SEQRES 14 B 243 THR SER THR VAL MET LEU TRP LEU GLN THR ASN LYS THR SEQRES 15 B 243 GLY SER GLY THR MET ASN LEU GLY GLY SER LEU THR ARG SEQRES 16 B 243 GLN MET GLU LYS ASP GLU THR VAL SER ASP SER SER PRO SEQRES 17 B 243 HIS ILE ALA ASN ILE GLY ARG LEU VAL GLU ASP MET GLU SEQRES 18 B 243 ASN LYS ILE ARG SER THR LEU ASN GLU ILE TYR PHE GLY SEQRES 19 B 243 LYS THR LYS ASP ILE VAL ASN GLY LEU SEQRES 1 T 52 LEU ARG GLN GLU LYS ARG SER SER GLY PHE ILE SER GLU SEQRES 2 T 52 LEU PRO SER GLU GLU GLY LYS LYS LEU GLU HIS PHE THR SEQRES 3 T 52 LYS LEU ARG PRO LYS ARG ASN LYS LYS GLN GLN PRO THR SEQRES 4 T 52 GLN ALA ALA VAL CYS ALA ALA ASN ILE VAL SER GLN ASP FORMUL 4 HOH *260(H2 O) HELIX 1 1 SER A 9 HIS A 23 1 15 HELIX 2 2 GLU A 28 ASN A 41 1 14 HELIX 3 3 ASN A 42 GLN A 61 1 20 HELIX 4 4 THR A 77 HIS A 79 5 3 HELIX 5 5 LEU A 117 TYR A 136 1 20 HELIX 6 6 PRO A 165 ASN A 167 5 3 HELIX 7 7 SER A 220 THR A 253 1 34 HELIX 8 8 ASP A 270 LEU A 275 1 6 HELIX 9 9 SER B 2 ARG B 14 1 13 HELIX 10 10 PRO B 17 GLN B 19 5 3 HELIX 11 11 GLN B 20 VAL B 32 1 13 HELIX 12 12 LEU B 35 VAL B 43 1 9 HELIX 13 13 CYS B 62 TYR B 64 5 3 HELIX 14 14 SER B 90 GLU B 113 1 24 HELIX 15 15 PRO B 208 GLY B 234 1 27 HELIX 16 16 GLY B 234 LEU B 243 1 10 HELIX 17 17 HIS T 984 ARG T 989 5 6 SHEET 1 A 2 PRO A 64 VAL A 65 0 SHEET 2 A 2 VAL A 74 LEU A 75 -1 O VAL A 74 N VAL A 65 SHEET 1 B 4 ASP A 81 GLY A 83 0 SHEET 2 B 4 ARG A 86 ASP A 89 -1 O ARG A 86 N LEU A 82 SHEET 3 B 4 ILE A 94 ASP A 99 -1 O ILE A 94 N ASP A 89 SHEET 4 B 4 GLU A 104 PRO A 110 -1 O GLU A 104 N ASP A 99 SHEET 1 C10 PHE A 140 ILE A 148 0 SHEET 2 C10 GLN A 151 GLN A 164 -1 O GLU A 159 N PHE A 140 SHEET 3 C10 TRP A 169 THR A 180 -1 O TRP A 177 N ALA A 156 SHEET 4 C10 THR A 185 TYR A 198 -1 O HIS A 197 N ASN A 170 SHEET 5 C10 GLY A 202 GLN A 217 -1 O VAL A 216 N ALA A 186 SHEET 6 C10 MET B 187 THR B 202 -1 O ASN B 188 N VAL A 207 SHEET 7 C10 THR B 164 THR B 179 -1 N LEU B 169 O MET B 197 SHEET 8 C10 ILE B 144 GLU B 158 -1 N ASP B 149 O MET B 174 SHEET 9 C10 GLY B 127 ALA B 137 -1 N ILE B 134 O SER B 150 SHEET 10 C10 VAL B 116 LEU B 124 -1 N SER B 118 O LEU B 133 SHEET 1 D 2 LYS B 48 ASP B 52 0 SHEET 2 D 2 LYS B 57 LEU B 61 -1 O LYS B 57 N ASP B 52 SHEET 1 E 3 ARG B 66 ASP B 67 0 SHEET 2 E 3 SER B 70 ARG B 72 -1 O SER B 70 N ASP B 67 SHEET 3 E 3 TYR B 79 ASP B 80 -1 O ASP B 80 N TYR B 71 CISPEP 1 PRO A 183 PRO A 184 0 -1.60 CISPEP 2 ASP B 80 PRO B 81 0 -3.74 CISPEP 3 PHE T 970 ILE T 971 0 0.26 CRYST1 54.900 71.800 154.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006491 0.00000