PDB Short entry for 3LM0 HEADER TRANSFERASE 29-JAN-10 3LM0 TITLE CRYSTAL STRUCTURE OF HUMAN SERINE/THREONINE KINASE 17B (STK17B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 17B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAP KINASE-RELATED APOPTOSIS-INDUCING PROTEIN KINASE 2; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DRAK2, STK17B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STK17B, SERINE/THREONINE KINASE 17B, DRAK2, DAP KINASE RELATED KEYWDS 2 APOPTOSIS-INDUCING PROTEIN KINASE 2, DEATH-ASSOCIATED PROTEIN KEYWDS 3 KINASE-RELATED 2, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC, APOPTOSIS, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 5 NUCLEUS, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,M.SOUNDARARAJAN,P.RELLOS,O.FEDOROV,C.PHILLIPS,J.WANG, AUTHOR 2 E.HAPKA,P.FILIPPAKOPOULOS,A.CHAIKUAD,A.C.W.PIKE,F.VON DELFT, AUTHOR 3 C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,S.KNAPP,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3LM0 1 REMARK SEQADV REVDAT 3 01-NOV-17 3LM0 1 REMARK REVDAT 2 13-JUL-11 3LM0 1 VERSN REVDAT 1 16-MAR-10 3LM0 0 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2303 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1520 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3128 ; 1.545 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3708 ; 0.926 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;35.425 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;14.882 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2536 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 447 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 0.661 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 556 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2258 ; 1.231 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 913 ; 2.025 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 867 ; 3.177 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8261 46.3671 -2.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0329 REMARK 3 T33: 0.0415 T12: 0.0049 REMARK 3 T13: 0.0507 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.7954 L22: 4.9209 REMARK 3 L33: 2.8890 L12: 1.2113 REMARK 3 L13: 0.4229 L23: -0.5751 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: 0.1377 S13: -0.1284 REMARK 3 S21: -0.0865 S22: 0.0705 S23: -0.1780 REMARK 3 S31: 0.1267 S32: -0.0327 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4139 38.8170 6.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.0734 REMARK 3 T33: 0.0716 T12: 0.0174 REMARK 3 T13: -0.0277 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.8637 L22: 3.8569 REMARK 3 L33: 2.8378 L12: -1.0956 REMARK 3 L13: 1.1165 L23: -1.6559 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: -0.1356 S13: 0.1005 REMARK 3 S21: 0.4163 S22: 0.0436 S23: -0.4092 REMARK 3 S31: -0.0611 S32: 0.2350 S33: 0.0833 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7989 26.3904 6.7392 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0775 REMARK 3 T33: 0.0649 T12: 0.0239 REMARK 3 T13: 0.0093 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 4.1822 L22: 3.9956 REMARK 3 L33: 3.5903 L12: 0.0686 REMARK 3 L13: 0.0527 L23: -0.3529 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: 0.2999 S13: 0.1928 REMARK 3 S21: -0.2070 S22: -0.0006 S23: 0.0932 REMARK 3 S31: -0.0894 S32: -0.0925 S33: 0.1020 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8388 16.8588 10.1072 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0497 REMARK 3 T33: 0.0880 T12: 0.0316 REMARK 3 T13: -0.0041 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.9687 L22: 2.0853 REMARK 3 L33: 3.3252 L12: 0.2536 REMARK 3 L13: 0.8102 L23: -1.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.1711 S13: -0.0813 REMARK 3 S21: 0.0139 S22: -0.0126 S23: -0.0470 REMARK 3 S31: 0.0863 S32: 0.1682 S33: -0.0656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 52.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : 0.13100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : 0.75000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EHA.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)3(CIT)20% PEG 3350, PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.82000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.91000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.82000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.73000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 THR A 17 REMARK 465 GLY A 187 REMARK 465 HIS A 188 REMARK 465 ALA A 189 REMARK 465 CYS A 190 REMARK 465 GLU A 191 REMARK 465 LEU A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 ILE A 195 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 GLN A 312 REMARK 465 THR A 313 REMARK 465 GLN A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 ARG A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 LYS A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 LYS A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 ARG A 67 CD NE CZ NH1 NH2 REMARK 470 GLU A 76 CD OE1 OE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LEU A 126 CG CD1 CD2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 MET A 129 CG SD CE REMARK 470 MET A 196 CG SD CE REMARK 470 GLU A 257 CD OE1 OE2 REMARK 470 LYS A 276 CE NZ REMARK 470 GLU A 279 CD OE1 OE2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 126 50.37 -108.91 REMARK 500 ASP A 158 33.98 -150.33 REMARK 500 ASP A 179 80.89 57.12 REMARK 500 SER A 183 130.17 -26.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DEATH ASSOCIATED PROTEIN KINASE COMPLEXED WITH REMARK 900 AMPPNP REMARK 900 RELATED ID: 3LM5 RELATED DB: PDB DBREF 3LM0 A 25 329 UNP O94768 ST17B_HUMAN 25 329 SEQADV 3LM0 MET A 3 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 4 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 5 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 6 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 7 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 8 UNP O94768 EXPRESSION TAG SEQADV 3LM0 HIS A 9 UNP O94768 EXPRESSION TAG SEQADV 3LM0 SER A 10 UNP O94768 EXPRESSION TAG SEQADV 3LM0 SER A 11 UNP O94768 EXPRESSION TAG SEQADV 3LM0 GLY A 12 UNP O94768 EXPRESSION TAG SEQADV 3LM0 VAL A 13 UNP O94768 EXPRESSION TAG SEQADV 3LM0 ASP A 14 UNP O94768 EXPRESSION TAG SEQADV 3LM0 LEU A 15 UNP O94768 EXPRESSION TAG SEQADV 3LM0 GLY A 16 UNP O94768 EXPRESSION TAG SEQADV 3LM0 THR A 17 UNP O94768 EXPRESSION TAG SEQADV 3LM0 GLU A 18 UNP O94768 EXPRESSION TAG SEQADV 3LM0 ASN A 19 UNP O94768 EXPRESSION TAG SEQADV 3LM0 LEU A 20 UNP O94768 EXPRESSION TAG SEQADV 3LM0 TYR A 21 UNP O94768 EXPRESSION TAG SEQADV 3LM0 PHE A 22 UNP O94768 EXPRESSION TAG SEQADV 3LM0 GLN A 23 UNP O94768 EXPRESSION TAG SEQADV 3LM0 SER A 24 UNP O94768 EXPRESSION TAG SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 327 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU ASN PHE SEQRES 3 A 327 ASN ASN PHE TYR ILE LEU THR SER LYS GLU LEU GLY ARG SEQRES 4 A 327 GLY LYS PHE ALA VAL VAL ARG GLN CYS ILE SER LYS SER SEQRES 5 A 327 THR GLY GLN GLU TYR ALA ALA LYS PHE LEU LYS LYS ARG SEQRES 6 A 327 ARG ARG GLY GLN ASP CYS ARG ALA GLU ILE LEU HIS GLU SEQRES 7 A 327 ILE ALA VAL LEU GLU LEU ALA LYS SER CYS PRO ARG VAL SEQRES 8 A 327 ILE ASN LEU HIS GLU VAL TYR GLU ASN THR SER GLU ILE SEQRES 9 A 327 ILE LEU ILE LEU GLU TYR ALA ALA GLY GLY GLU ILE PHE SEQRES 10 A 327 SER LEU CYS LEU PRO GLU LEU ALA GLU MET VAL SER GLU SEQRES 11 A 327 ASN ASP VAL ILE ARG LEU ILE LYS GLN ILE LEU GLU GLY SEQRES 12 A 327 VAL TYR TYR LEU HIS GLN ASN ASN ILE VAL HIS LEU ASP SEQRES 13 A 327 LEU LYS PRO GLN ASN ILE LEU LEU SER SER ILE TYR PRO SEQRES 14 A 327 LEU GLY ASP ILE LYS ILE VAL ASP PHE GLY MET SER ARG SEQRES 15 A 327 LYS ILE GLY HIS ALA CYS GLU LEU ARG GLU ILE MET GLY SEQRES 16 A 327 THR PRO GLU TYR LEU ALA PRO GLU ILE LEU ASN TYR ASP SEQRES 17 A 327 PRO ILE THR THR ALA THR ASP MET TRP ASN ILE GLY ILE SEQRES 18 A 327 ILE ALA TYR MET LEU LEU THR HIS THR SER PRO PHE VAL SEQRES 19 A 327 GLY GLU ASP ASN GLN GLU THR TYR LEU ASN ILE SER GLN SEQRES 20 A 327 VAL ASN VAL ASP TYR SER GLU GLU THR PHE SER SER VAL SEQRES 21 A 327 SER GLN LEU ALA THR ASP PHE ILE GLN SER LEU LEU VAL SEQRES 22 A 327 LYS ASN PRO GLU LYS ARG PRO THR ALA GLU ILE CYS LEU SEQRES 23 A 327 SER HIS SER TRP LEU GLN GLN TRP ASP PHE GLU ASN LEU SEQRES 24 A 327 PHE HIS PRO GLU GLU THR SER SER SER SER GLN THR GLN SEQRES 25 A 327 ASP HIS SER VAL ARG SER SER GLU ASP LYS THR SER LYS SEQRES 26 A 327 SER SER HET EBD A 1 26 HET EDO A 330 4 HET CL A 2 1 HETNAM EBD [4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]-5- HETNAM 2 EBD METHYLPYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EBD C19 H19 N7 FORMUL 3 EDO C2 H6 O2 FORMUL 4 CL CL 1- FORMUL 5 HOH *136(H2 O) HELIX 1 1 SER A 24 PHE A 31 1 8 HELIX 2 2 CYS A 73 ALA A 87 1 15 HELIX 3 3 PHE A 119 ALA A 127 5 9 HELIX 4 4 SER A 131 ASN A 152 1 22 HELIX 5 5 LYS A 160 GLN A 162 5 3 HELIX 6 6 THR A 198 LEU A 202 5 5 HELIX 7 7 ALA A 203 ASN A 208 1 6 HELIX 8 8 THR A 214 HIS A 231 1 18 HELIX 9 9 ASP A 239 GLN A 249 1 11 HELIX 10 10 SER A 255 SER A 260 1 6 HELIX 11 11 SER A 263 LEU A 274 1 12 HELIX 12 12 ASN A 277 ARG A 281 5 5 HELIX 13 13 THR A 283 SER A 289 1 7 HELIX 14 14 HIS A 290 GLN A 294 5 5 SHEET 1 A 5 TYR A 32 ARG A 41 0 SHEET 2 A 5 ALA A 45 SER A 52 -1 O VAL A 47 N GLY A 40 SHEET 3 A 5 GLU A 58 LYS A 65 -1 O ALA A 61 N ARG A 48 SHEET 4 A 5 GLU A 105 GLU A 111 -1 O LEU A 110 N ALA A 60 SHEET 5 A 5 LEU A 96 GLU A 101 -1 N TYR A 100 O ILE A 107 SHEET 1 B 2 ARG A 67 ARG A 68 0 SHEET 2 B 2 GLN A 71 ASP A 72 -1 O GLN A 71 N ARG A 68 SHEET 1 C 3 GLY A 116 GLU A 117 0 SHEET 2 C 3 ILE A 164 LEU A 166 -1 O LEU A 166 N GLY A 116 SHEET 3 C 3 ILE A 175 ILE A 177 -1 O LYS A 176 N LEU A 165 CISPEP 1 TYR A 170 PRO A 171 0 2.05 SITE 1 AC1 15 CL A 2 LYS A 37 ALA A 60 LYS A 62 SITE 2 AC1 15 GLU A 111 TYR A 112 ALA A 113 GLY A 116 SITE 3 AC1 15 GLU A 117 GLN A 162 ASN A 163 LEU A 165 SITE 4 AC1 15 VAL A 178 ASP A 179 HOH A 457 SITE 1 AC2 7 VAL A 46 ARG A 48 PHE A 63 GLU A 132 SITE 2 AC2 7 SER A 263 HOH A 344 HOH A 403 SITE 1 AC3 2 EBD A 1 ASP A 179 CRYST1 83.540 83.540 115.640 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008648 0.00000