PDB Short entry for 3LPI HEADER HYDROLASE 05-FEB-10 3LPI TITLE STRUCTURE OF BACE BOUND TO SCH745132 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 14-454; COMPND 5 SYNONYM: BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 1, BETA- COMPND 6 SITE APP CLEAVING ENZYME 1, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2, COMPND 7 MEMAPSIN-2, ASPARTYL PROTEASE 2, ASP 2, ASP2; COMPND 8 EC: 3.4.23.46; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE, BACE1, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11A KEYWDS ALZHEIMER'S, ASPARTYL PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.STRICKLAND,J.CUMMING REVDAT 3 01-NOV-17 3LPI 1 REMARK REVDAT 2 05-MAY-10 3LPI 1 JRNL REVDAT 1 14-APR-10 3LPI 0 JRNL AUTH J.CUMMING,S.BABU,Y.HUANG,C.CARROL,X.CHEN,L.FAVREAU, JRNL AUTH 2 W.GREENLEE,T.GUO,M.KENNEDY,R.KUVELKAR,T.LE,G.LI,N.MCHUGH, JRNL AUTH 3 P.ORTH,L.OZGUR,E.PARKER,K.SAIONZ,A.STAMFORD,C.STRICKLAND, JRNL AUTH 4 D.TADESSE,J.VOIGT,L.ZHANG,Q.ZHANG JRNL TITL PIPERAZINE SULFONAMIDE BACE1 INHIBITORS: DESIGN, SYNTHESIS, JRNL TITL 2 AND IN VIVO CHARACTERIZATION. JRNL REF BIOORG.MED.CHEM.LETT. V. 20 2837 2010 JRNL REFN ISSN 0960-894X JRNL PMID 20347593 JRNL DOI 10.1016/J.BMCL.2010.03.050 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3262 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 894 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : MSI_CNX_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : MSI_CNX_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : MSI_CNX_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : PARATARTRATE.PRO REMARK 3 PARAMETER FILE 5 : PARASCH745132.PRO REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : MSI_CNX_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : MSI_CNX_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 3 : MSI_CNX_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 4 : TOPTARTRATE.PRO REMARK 3 TOPOLOGY FILE 5 : TOPSCH745132.PRO REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.21350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.67750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.72550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.67750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.21350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.72550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 MET A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 VAL A 16 REMARK 465 LEU A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 HIS A 24 REMARK 465 GLY A 25 REMARK 465 ILE A 26 REMARK 465 ARG A 27 REMARK 465 LEU A 28 REMARK 465 PRO A 29 REMARK 465 LEU A 30 REMARK 465 ARG A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 LEU A 34 REMARK 465 GLY A 35 REMARK 465 GLY A 36 REMARK 465 ALA A 37 REMARK 465 PRO A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 ARG A 42 REMARK 465 LEU A 43 REMARK 465 PRO A 44 REMARK 465 ARG A 45 REMARK 465 GLU A 46 REMARK 465 THR A 47 REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 GLU A 53 REMARK 465 PRO A 54 REMARK 465 GLY A 55 REMARK 465 ARG A 56 REMARK 465 ARG A 57 REMARK 465 PRO A 448 REMARK 465 GLN A 449 REMARK 465 THR A 450 REMARK 465 ASP A 451 REMARK 465 GLU A 452 REMARK 465 SER A 453 REMARK 465 THR A 454 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 MET B 9 REMARK 465 GLY B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 16 REMARK 465 LEU B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 HIS B 20 REMARK 465 GLY B 21 REMARK 465 THR B 22 REMARK 465 GLN B 23 REMARK 465 HIS B 24 REMARK 465 GLY B 25 REMARK 465 ILE B 26 REMARK 465 ARG B 27 REMARK 465 LEU B 28 REMARK 465 PRO B 29 REMARK 465 LEU B 30 REMARK 465 ARG B 31 REMARK 465 SER B 32 REMARK 465 GLY B 33 REMARK 465 LEU B 34 REMARK 465 GLY B 35 REMARK 465 GLY B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 LEU B 39 REMARK 465 GLY B 40 REMARK 465 LEU B 41 REMARK 465 ARG B 42 REMARK 465 LEU B 43 REMARK 465 PRO B 44 REMARK 465 ARG B 45 REMARK 465 GLU B 46 REMARK 465 THR B 47 REMARK 465 ASP B 48 REMARK 465 GLU B 49 REMARK 465 GLU B 50 REMARK 465 PRO B 51 REMARK 465 GLU B 52 REMARK 465 GLU B 53 REMARK 465 PRO B 54 REMARK 465 GLY B 55 REMARK 465 ARG B 56 REMARK 465 ARG B 57 REMARK 465 ILE B 447 REMARK 465 PRO B 448 REMARK 465 GLN B 449 REMARK 465 THR B 450 REMARK 465 ASP B 451 REMARK 465 GLU B 452 REMARK 465 SER B 453 REMARK 465 THR B 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 134 -91.66 -61.73 REMARK 500 HIS A 150 59.21 -106.53 REMARK 500 PHE A 169 -64.81 -95.31 REMARK 500 TRP A 258 -74.96 -144.13 REMARK 500 ALA A 333 121.28 -38.89 REMARK 500 SER A 376 -169.74 -65.90 REMARK 500 ALA A 384 35.80 -93.66 REMARK 500 GLN B 134 -79.10 -62.75 REMARK 500 HIS B 150 57.53 -108.96 REMARK 500 PHE B 169 -64.47 -97.08 REMARK 500 LEU B 210 149.20 -170.55 REMARK 500 TRP B 258 -75.28 -143.38 REMARK 500 ALA B 333 122.39 -39.74 REMARK 500 THR B 375 16.19 55.91 REMARK 500 SER B 376 -177.31 -56.05 REMARK 500 ALA B 384 38.02 -94.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z74 A 456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z74 B 456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LPJ RELATED DB: PDB REMARK 900 STRUCTURE OF BACE BOUND TO SCH743641 REMARK 900 RELATED ID: 3LPK RELATED DB: PDB REMARK 900 STRUCTURE OF BACE BOUND TO SCH747123 DBREF 3LPI A 14 454 UNP P56817 BACE1_HUMAN 14 454 DBREF 3LPI B 14 454 UNP P56817 BACE1_HUMAN 14 454 SEQADV 3LPI MET A 0 UNP P56817 EXPRESSION TAG SEQADV 3LPI ALA A 1 UNP P56817 EXPRESSION TAG SEQADV 3LPI SER A 2 UNP P56817 EXPRESSION TAG SEQADV 3LPI MET A 3 UNP P56817 EXPRESSION TAG SEQADV 3LPI THR A 4 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY A 5 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY A 6 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLN A 7 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLN A 8 UNP P56817 EXPRESSION TAG SEQADV 3LPI MET A 9 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY A 10 UNP P56817 EXPRESSION TAG SEQADV 3LPI ARG A 11 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY A 12 UNP P56817 EXPRESSION TAG SEQADV 3LPI SER A 13 UNP P56817 EXPRESSION TAG SEQADV 3LPI MET B 0 UNP P56817 EXPRESSION TAG SEQADV 3LPI ALA B 1 UNP P56817 EXPRESSION TAG SEQADV 3LPI SER B 2 UNP P56817 EXPRESSION TAG SEQADV 3LPI MET B 3 UNP P56817 EXPRESSION TAG SEQADV 3LPI THR B 4 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY B 5 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY B 6 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLN B 7 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLN B 8 UNP P56817 EXPRESSION TAG SEQADV 3LPI MET B 9 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY B 10 UNP P56817 EXPRESSION TAG SEQADV 3LPI ARG B 11 UNP P56817 EXPRESSION TAG SEQADV 3LPI GLY B 12 UNP P56817 EXPRESSION TAG SEQADV 3LPI SER B 13 UNP P56817 EXPRESSION TAG SEQRES 1 A 455 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 455 SER ALA GLY VAL LEU PRO ALA HIS GLY THR GLN HIS GLY SEQRES 3 A 455 ILE ARG LEU PRO LEU ARG SER GLY LEU GLY GLY ALA PRO SEQRES 4 A 455 LEU GLY LEU ARG LEU PRO ARG GLU THR ASP GLU GLU PRO SEQRES 5 A 455 GLU GLU PRO GLY ARG ARG GLY SER PHE VAL GLU MET VAL SEQRES 6 A 455 ASP ASN LEU ARG GLY LYS SER GLY GLN GLY TYR TYR VAL SEQRES 7 A 455 GLU MET THR VAL GLY SER PRO PRO GLN THR LEU ASN ILE SEQRES 8 A 455 LEU VAL ASP THR GLY SER SER ASN PHE ALA VAL GLY ALA SEQRES 9 A 455 ALA PRO HIS PRO PHE LEU HIS ARG TYR TYR GLN ARG GLN SEQRES 10 A 455 LEU SER SER THR TYR ARG ASP LEU ARG LYS GLY VAL TYR SEQRES 11 A 455 VAL PRO TYR THR GLN GLY LYS TRP GLU GLY GLU LEU GLY SEQRES 12 A 455 THR ASP LEU VAL SER ILE PRO HIS GLY PRO ASN VAL THR SEQRES 13 A 455 VAL ARG ALA ASN ILE ALA ALA ILE THR GLU SER ASP LYS SEQRES 14 A 455 PHE PHE ILE ASN GLY SER ASN TRP GLU GLY ILE LEU GLY SEQRES 15 A 455 LEU ALA TYR ALA GLU ILE ALA ARG PRO ASP ASP SER LEU SEQRES 16 A 455 GLU PRO PHE PHE ASP SER LEU VAL LYS GLN THR HIS VAL SEQRES 17 A 455 PRO ASN LEU PHE SER LEU GLN LEU CYS GLY ALA GLY PHE SEQRES 18 A 455 PRO LEU ASN GLN SER GLU VAL LEU ALA SER VAL GLY GLY SEQRES 19 A 455 SER MET ILE ILE GLY GLY ILE ASP HIS SER LEU TYR THR SEQRES 20 A 455 GLY SER LEU TRP TYR THR PRO ILE ARG ARG GLU TRP TYR SEQRES 21 A 455 TYR GLU VAL ILE ILE VAL ARG VAL GLU ILE ASN GLY GLN SEQRES 22 A 455 ASP LEU LYS MET ASP CYS LYS GLU TYR ASN TYR ASP LYS SEQRES 23 A 455 SER ILE VAL ASP SER GLY THR THR ASN LEU ARG LEU PRO SEQRES 24 A 455 LYS LYS VAL PHE GLU ALA ALA VAL LYS SER ILE LYS ALA SEQRES 25 A 455 ALA SER SER THR GLU LYS PHE PRO ASP GLY PHE TRP LEU SEQRES 26 A 455 GLY GLU GLN LEU VAL CYS TRP GLN ALA GLY THR THR PRO SEQRES 27 A 455 TRP ASN ILE PHE PRO VAL ILE SER LEU TYR LEU MET GLY SEQRES 28 A 455 GLU VAL THR ASN GLN SER PHE ARG ILE THR ILE LEU PRO SEQRES 29 A 455 GLN GLN TYR LEU ARG PRO VAL GLU ASP VAL ALA THR SER SEQRES 30 A 455 GLN ASP ASP CYS TYR LYS PHE ALA ILE SER GLN SER SER SEQRES 31 A 455 THR GLY THR VAL MET GLY ALA VAL ILE MET GLU GLY PHE SEQRES 32 A 455 TYR VAL VAL PHE ASP ARG ALA ARG LYS ARG ILE GLY PHE SEQRES 33 A 455 ALA VAL SER ALA CYS HIS VAL HIS ASP GLU PHE ARG THR SEQRES 34 A 455 ALA ALA VAL GLU GLY PRO PHE VAL THR LEU ASP MET GLU SEQRES 35 A 455 ASP CYS GLY TYR ASN ILE PRO GLN THR ASP GLU SER THR SEQRES 1 B 455 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 B 455 SER ALA GLY VAL LEU PRO ALA HIS GLY THR GLN HIS GLY SEQRES 3 B 455 ILE ARG LEU PRO LEU ARG SER GLY LEU GLY GLY ALA PRO SEQRES 4 B 455 LEU GLY LEU ARG LEU PRO ARG GLU THR ASP GLU GLU PRO SEQRES 5 B 455 GLU GLU PRO GLY ARG ARG GLY SER PHE VAL GLU MET VAL SEQRES 6 B 455 ASP ASN LEU ARG GLY LYS SER GLY GLN GLY TYR TYR VAL SEQRES 7 B 455 GLU MET THR VAL GLY SER PRO PRO GLN THR LEU ASN ILE SEQRES 8 B 455 LEU VAL ASP THR GLY SER SER ASN PHE ALA VAL GLY ALA SEQRES 9 B 455 ALA PRO HIS PRO PHE LEU HIS ARG TYR TYR GLN ARG GLN SEQRES 10 B 455 LEU SER SER THR TYR ARG ASP LEU ARG LYS GLY VAL TYR SEQRES 11 B 455 VAL PRO TYR THR GLN GLY LYS TRP GLU GLY GLU LEU GLY SEQRES 12 B 455 THR ASP LEU VAL SER ILE PRO HIS GLY PRO ASN VAL THR SEQRES 13 B 455 VAL ARG ALA ASN ILE ALA ALA ILE THR GLU SER ASP LYS SEQRES 14 B 455 PHE PHE ILE ASN GLY SER ASN TRP GLU GLY ILE LEU GLY SEQRES 15 B 455 LEU ALA TYR ALA GLU ILE ALA ARG PRO ASP ASP SER LEU SEQRES 16 B 455 GLU PRO PHE PHE ASP SER LEU VAL LYS GLN THR HIS VAL SEQRES 17 B 455 PRO ASN LEU PHE SER LEU GLN LEU CYS GLY ALA GLY PHE SEQRES 18 B 455 PRO LEU ASN GLN SER GLU VAL LEU ALA SER VAL GLY GLY SEQRES 19 B 455 SER MET ILE ILE GLY GLY ILE ASP HIS SER LEU TYR THR SEQRES 20 B 455 GLY SER LEU TRP TYR THR PRO ILE ARG ARG GLU TRP TYR SEQRES 21 B 455 TYR GLU VAL ILE ILE VAL ARG VAL GLU ILE ASN GLY GLN SEQRES 22 B 455 ASP LEU LYS MET ASP CYS LYS GLU TYR ASN TYR ASP LYS SEQRES 23 B 455 SER ILE VAL ASP SER GLY THR THR ASN LEU ARG LEU PRO SEQRES 24 B 455 LYS LYS VAL PHE GLU ALA ALA VAL LYS SER ILE LYS ALA SEQRES 25 B 455 ALA SER SER THR GLU LYS PHE PRO ASP GLY PHE TRP LEU SEQRES 26 B 455 GLY GLU GLN LEU VAL CYS TRP GLN ALA GLY THR THR PRO SEQRES 27 B 455 TRP ASN ILE PHE PRO VAL ILE SER LEU TYR LEU MET GLY SEQRES 28 B 455 GLU VAL THR ASN GLN SER PHE ARG ILE THR ILE LEU PRO SEQRES 29 B 455 GLN GLN TYR LEU ARG PRO VAL GLU ASP VAL ALA THR SER SEQRES 30 B 455 GLN ASP ASP CYS TYR LYS PHE ALA ILE SER GLN SER SER SEQRES 31 B 455 THR GLY THR VAL MET GLY ALA VAL ILE MET GLU GLY PHE SEQRES 32 B 455 TYR VAL VAL PHE ASP ARG ALA ARG LYS ARG ILE GLY PHE SEQRES 33 B 455 ALA VAL SER ALA CYS HIS VAL HIS ASP GLU PHE ARG THR SEQRES 34 B 455 ALA ALA VAL GLU GLY PRO PHE VAL THR LEU ASP MET GLU SEQRES 35 B 455 ASP CYS GLY TYR ASN ILE PRO GLN THR ASP GLU SER THR HET TLA A 455 10 HET Z74 A 456 46 HET TLA B 455 10 HET Z74 B 456 46 HETNAM TLA L(+)-TARTARIC ACID HETNAM Z74 N'-{(1S,2S)-1-(3,5-DIFLUOROBENZYL)-2-HYDROXY-2-[(2R)-4- HETNAM 2 Z74 (PHENYLSULFONYL)PIPERAZIN-2-YL]ETHYL}-5-METHYL-N,N- HETNAM 3 Z74 DIPROPYLBENZENE-1,3-DICARBOXAMIDE FORMUL 3 TLA 2(C4 H6 O6) FORMUL 4 Z74 2(C34 H42 F2 N4 O5 S) FORMUL 7 HOH *894(H2 O) HELIX 1 1 GLN A 114 SER A 118 5 5 HELIX 2 2 TYR A 184 ALA A 188 5 5 HELIX 3 3 PRO A 196 THR A 205 1 10 HELIX 4 4 ASN A 223 SER A 230 1 8 HELIX 5 5 ASP A 241 SER A 243 5 3 HELIX 6 6 ASP A 277 ASN A 282 1 6 HELIX 7 7 LYS A 299 SER A 313 1 15 HELIX 8 8 PRO A 319 LEU A 324 1 6 HELIX 9 9 PRO A 337 PHE A 341 5 5 HELIX 10 10 LEU A 362 TYR A 366 1 5 HELIX 11 11 GLY A 395 GLU A 400 1 6 HELIX 12 12 ASP A 439 GLY A 444 5 6 HELIX 13 13 GLN B 114 SER B 118 5 5 HELIX 14 14 TYR B 184 ALA B 188 5 5 HELIX 15 15 PRO B 196 THR B 205 1 10 HELIX 16 16 ASN B 223 SER B 230 1 8 HELIX 17 17 ASP B 241 SER B 243 5 3 HELIX 18 18 ASP B 277 ASN B 282 1 6 HELIX 19 19 LYS B 299 SER B 313 1 15 HELIX 20 20 PRO B 319 LEU B 324 1 6 HELIX 21 21 PRO B 337 PHE B 341 5 5 HELIX 22 22 LEU B 362 TYR B 366 1 5 HELIX 23 23 GLY B 395 GLU B 400 1 6 HELIX 24 24 ARG B 408 ARG B 410 5 3 HELIX 25 25 ASP B 439 GLY B 444 5 6 SHEET 1 A 8 LEU A 67 LYS A 70 0 SHEET 2 A 8 GLY A 74 VAL A 81 -1 O TYR A 76 N ARG A 68 SHEET 3 A 8 GLN A 86 ASP A 93 -1 O ILE A 90 N VAL A 77 SHEET 4 A 8 GLY A 178 GLY A 181 1 O LEU A 180 N LEU A 91 SHEET 5 A 8 PHE A 99 GLY A 102 -1 N ALA A 100 O ILE A 179 SHEET 6 A 8 THR A 155 ASP A 167 1 O ILE A 163 N VAL A 101 SHEET 7 A 8 LYS A 136 SER A 147 -1 N VAL A 146 O VAL A 156 SHEET 8 A 8 ARG A 122 PRO A 131 -1 N LYS A 126 O LEU A 141 SHEET 1 B 4 LEU A 67 LYS A 70 0 SHEET 2 B 4 GLY A 74 VAL A 81 -1 O TYR A 76 N ARG A 68 SHEET 3 B 4 LYS A 136 SER A 147 -1 O SER A 147 N THR A 80 SHEET 4 B 4 ARG A 122 PRO A 131 -1 N LYS A 126 O LEU A 141 SHEET 1 C 5 GLY A 233 ILE A 237 0 SHEET 2 C 5 PHE A 211 LEU A 215 -1 N GLN A 214 O SER A 234 SHEET 3 C 5 PHE A 402 ASP A 407 -1 O VAL A 404 N LEU A 213 SHEET 4 C 5 ARG A 412 SER A 418 -1 O ALA A 416 N TYR A 403 SHEET 5 C 5 TYR A 245 PRO A 253 -1 N THR A 252 O ILE A 413 SHEET 1 D 5 GLU A 261 VAL A 262 0 SHEET 2 D 5 SER A 286 VAL A 288 -1 O SER A 286 N VAL A 262 SHEET 3 D 5 THR A 392 MET A 394 1 O MET A 394 N ILE A 287 SHEET 4 D 5 LEU A 295 PRO A 298 -1 N ARG A 296 O VAL A 393 SHEET 5 D 5 ILE A 385 SER A 388 1 O SER A 388 N LEU A 297 SHEET 1 E 5 GLN A 272 ASP A 273 0 SHEET 2 E 5 ILE A 264 ILE A 269 -1 N ILE A 269 O GLN A 272 SHEET 3 E 5 ILE A 344 MET A 349 -1 O TYR A 347 N ARG A 266 SHEET 4 E 5 GLN A 355 ILE A 361 -1 O ILE A 361 N ILE A 344 SHEET 5 E 5 ALA A 430 VAL A 436 -1 O GLU A 432 N ARG A 358 SHEET 1 F 3 VAL A 329 TRP A 331 0 SHEET 2 F 3 ASP A 379 PHE A 383 -1 O ASP A 379 N TRP A 331 SHEET 3 F 3 LEU A 367 VAL A 370 -1 N ARG A 368 O LYS A 382 SHEET 1 G 8 LEU B 67 LYS B 70 0 SHEET 2 G 8 GLY B 74 VAL B 81 -1 O TYR B 76 N ARG B 68 SHEET 3 G 8 GLN B 86 ASP B 93 -1 O ILE B 90 N VAL B 77 SHEET 4 G 8 GLY B 178 GLY B 181 1 O LEU B 180 N LEU B 91 SHEET 5 G 8 PHE B 99 GLY B 102 -1 N ALA B 100 O ILE B 179 SHEET 6 G 8 THR B 155 ASP B 167 1 O ILE B 163 N VAL B 101 SHEET 7 G 8 LYS B 136 SER B 147 -1 N VAL B 146 O VAL B 156 SHEET 8 G 8 ARG B 122 PRO B 131 -1 N LYS B 126 O LEU B 141 SHEET 1 H 4 LEU B 67 LYS B 70 0 SHEET 2 H 4 GLY B 74 VAL B 81 -1 O TYR B 76 N ARG B 68 SHEET 3 H 4 LYS B 136 SER B 147 -1 O SER B 147 N THR B 80 SHEET 4 H 4 ARG B 122 PRO B 131 -1 N LYS B 126 O LEU B 141 SHEET 1 I 5 GLY B 233 ILE B 237 0 SHEET 2 I 5 PHE B 211 LEU B 215 -1 N GLN B 214 O SER B 234 SHEET 3 I 5 PHE B 402 ASP B 407 -1 O VAL B 404 N LEU B 213 SHEET 4 I 5 ARG B 412 SER B 418 -1 O ALA B 416 N TYR B 403 SHEET 5 I 5 TYR B 245 PRO B 253 -1 N THR B 252 O ILE B 413 SHEET 1 J 5 GLN B 272 ASP B 273 0 SHEET 2 J 5 ILE B 264 ILE B 269 -1 N ILE B 269 O GLN B 272 SHEET 3 J 5 ILE B 344 MET B 349 -1 O TYR B 347 N ARG B 266 SHEET 4 J 5 GLN B 355 ILE B 361 -1 O ILE B 361 N ILE B 344 SHEET 5 J 5 ALA B 430 VAL B 436 -1 O GLU B 432 N ARG B 358 SHEET 1 K 4 SER B 286 VAL B 288 0 SHEET 2 K 4 THR B 392 MET B 394 1 O MET B 394 N ILE B 287 SHEET 3 K 4 LEU B 295 PRO B 298 -1 N ARG B 296 O VAL B 393 SHEET 4 K 4 ILE B 385 SER B 388 1 O SER B 386 N LEU B 297 SHEET 1 L 3 VAL B 329 TRP B 331 0 SHEET 2 L 3 ASP B 379 PHE B 383 -1 O ASP B 379 N TRP B 331 SHEET 3 L 3 LEU B 367 VAL B 370 -1 N ARG B 368 O LYS B 382 SSBOND 1 CYS A 216 CYS A 420 1555 1555 2.04 SSBOND 2 CYS A 278 CYS A 443 1555 1555 2.03 SSBOND 3 CYS A 330 CYS A 380 1555 1555 2.03 SSBOND 4 CYS B 216 CYS B 420 1555 1555 2.04 SSBOND 5 CYS B 278 CYS B 443 1555 1555 2.03 SSBOND 6 CYS B 330 CYS B 380 1555 1555 2.03 CISPEP 1 SER A 83 PRO A 84 0 -0.26 CISPEP 2 ARG A 189 PRO A 190 0 0.18 CISPEP 3 TYR A 283 ASP A 284 0 12.55 CISPEP 4 GLY A 433 PRO A 434 0 -0.12 CISPEP 5 SER B 83 PRO B 84 0 -0.15 CISPEP 6 ARG B 189 PRO B 190 0 0.08 CISPEP 7 TYR B 283 ASP B 284 0 5.70 CISPEP 8 GLY B 433 PRO B 434 0 -0.09 SITE 1 AC1 8 ARG A 68 ASN A 89 HIS A 110 ARG A 111 SITE 2 AC1 8 ASN A 175 HOH A 599 HOH A 656 HOH A 670 SITE 1 AC2 20 GLY A 72 LEU A 91 ASP A 93 GLY A 95 SITE 2 AC2 20 SER A 96 TYR A 132 THR A 133 GLN A 134 SITE 3 AC2 20 GLY A 135 PHE A 169 ILE A 171 TRP A 176 SITE 4 AC2 20 ILE A 187 ARG A 189 TYR A 259 ASP A 289 SITE 5 AC2 20 GLY A 291 THR A 292 THR A 293 HOH A 908 SITE 1 AC3 9 ARG B 68 ASN B 89 HIS B 110 ARG B 111 SITE 2 AC3 9 ASN B 175 HOH B 558 HOH B 620 HOH B 706 SITE 3 AC3 9 HOH B 713 SITE 1 AC4 22 GLY B 72 LEU B 91 ASP B 93 GLY B 95 SITE 2 AC4 22 SER B 96 TYR B 132 THR B 133 GLN B 134 SITE 3 AC4 22 GLY B 135 PHE B 169 ILE B 171 TRP B 176 SITE 4 AC4 22 ILE B 187 ARG B 189 TYR B 259 ILE B 287 SITE 5 AC4 22 ASP B 289 GLY B 291 THR B 292 THR B 293 SITE 6 AC4 22 HOH B 850 HOH B 874 CRYST1 86.427 89.451 131.355 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007613 0.00000