PDB Short entry for 3LQZ HEADER IMMUNE SYSTEM 10-FEB-10 3LQZ TITLE CRYSTAL STRUCTURE OF HLA-DP2 CAVEAT 3LQZ NAG B 190 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP ALPHA 1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HLA-SB ALPHA CHAIN, MHC CLASS II DP3-ALPHA, DP(W3), DP(W4); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA-DP2 BETA CHAIN LINKED WITH DRA PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS II, DP BETA 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DP1A, HLA-DPA1, HLA-DPA1*0103, HLASB; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: DAMA-245O6.7-001, HLA-DPB1, HLA-DPB1*0201; SOURCE 14 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4 KEYWDS HLA, MHC, IMMUNE, DISULFIDE BOND, GLYCOPROTEIN, IMMUNE RESPONSE, KEYWDS 2 MEMBRANE, MHC II, TRANSMEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI REVDAT 5 29-JUL-20 3LQZ 1 CAVEAT COMPND REMARK HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 04-SEP-19 3LQZ 1 LINK CRYST1 REVDAT 3 13-JUL-11 3LQZ 1 VERSN REVDAT 2 05-MAY-10 3LQZ 1 JRNL REVDAT 1 14-APR-10 3LQZ 0 JRNL AUTH S.DAI,G.A.MURPHY,F.CRAWFORD,D.G.MACK,M.T.FALTA,P.MARRACK, JRNL AUTH 2 J.W.KAPPLER,A.P.FONTENOT JRNL TITL CRYSTAL STRUCTURE OF HLA-DP2 AND IMPLICATIONS FOR CHRONIC JRNL TITL 2 BERYLLIUM DISEASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 7425 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20356827 JRNL DOI 10.1073/PNAS.1001772107 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 11332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.94000 REMARK 3 B22 (A**2) : 5.94000 REMARK 3 B33 (A**2) : -8.91000 REMARK 3 B12 (A**2) : 2.97000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.439 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.355 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3252 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4426 ; 1.490 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 6.719 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;41.920 ;24.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;21.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2564 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1383 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2177 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 0.364 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3076 ; 0.672 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 0.957 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1350 ; 1.661 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 54.0400 -37.2810 5.3790 REMARK 3 T TENSOR REMARK 3 T11: -0.3006 T22: -0.2296 REMARK 3 T33: -0.2938 T12: -0.0666 REMARK 3 T13: -0.1266 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.8359 L22: 2.3171 REMARK 3 L33: 4.3693 L12: 0.4828 REMARK 3 L13: -1.6206 L23: -0.2668 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: -0.1584 S13: 0.2297 REMARK 3 S21: -0.0476 S22: -0.0119 S23: 0.2631 REMARK 3 S31: -0.8404 S32: -0.5076 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8590 -53.4290 2.2190 REMARK 3 T TENSOR REMARK 3 T11: -0.4210 T22: -0.3195 REMARK 3 T33: -0.2652 T12: -0.2041 REMARK 3 T13: -0.1996 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.5036 L22: 1.9270 REMARK 3 L33: 4.2617 L12: 0.6654 REMARK 3 L13: -1.3225 L23: -0.8028 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.1263 S13: -0.2653 REMARK 3 S21: -0.0530 S22: -0.0407 S23: -0.0557 REMARK 3 S31: 0.1003 S32: -0.3247 S33: 0.0908 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -22 B -8 REMARK 3 ORIGIN FOR THE GROUP (A): 70.2640 -41.6900 -11.0350 REMARK 3 T TENSOR REMARK 3 T11: -0.2836 T22: -0.4628 REMARK 3 T33: -0.0249 T12: -0.1997 REMARK 3 T13: 0.0796 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.6055 L22: 11.0906 REMARK 3 L33: 3.0329 L12: -3.7948 REMARK 3 L13: 0.2394 L23: -3.0525 REMARK 3 S TENSOR REMARK 3 S11: 0.5502 S12: 0.7031 S13: 0.7665 REMARK 3 S21: -1.4606 S22: -0.9247 S23: -0.6661 REMARK 3 S31: 1.5095 S32: 1.0758 S33: 0.3745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 170; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; APS REMARK 200 BEAMLINE : 8.2.2; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12053 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 136.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 300MM SODIUM CHLORIDE, REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.60160 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.20320 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.20320 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.60160 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 106 REMARK 465 LEU B 107 REMARK 465 GLN B 108 REMARK 465 HIS B 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 -77.18 0.31 REMARK 500 GLU A 28 -15.12 71.90 REMARK 500 MET A 31 -62.71 -90.07 REMARK 500 GLN A 75 -80.21 -74.57 REMARK 500 ARG A 76 54.29 -62.33 REMARK 500 SER A 77 19.77 -175.50 REMARK 500 ASN A 78 36.52 39.27 REMARK 500 LEU A 99 114.22 -26.68 REMARK 500 PRO A 102 125.30 -36.21 REMARK 500 THR A 129 -68.25 -109.52 REMARK 500 GLU A 134 149.50 -170.74 REMARK 500 PHE A 137 91.90 -59.50 REMARK 500 PRO A 155 94.17 -47.88 REMARK 500 ASP A 159 120.65 179.40 REMARK 500 LEU A 170 -160.00 -103.29 REMARK 500 ASP A 171 -24.69 -169.97 REMARK 500 PHE B 18 -124.30 -112.67 REMARK 500 ARG B 32 -19.32 82.16 REMARK 500 ARG B 37 144.45 -179.71 REMARK 500 PRO B 73 -25.20 -38.55 REMARK 500 ARG B 75 -95.41 -78.75 REMARK 500 THR B 88 -64.12 -104.05 REMARK 500 PRO B 101 -153.82 -64.34 REMARK 500 SER B 102 82.46 135.52 REMARK 500 LYS B 103 -87.07 -126.65 REMARK 500 LYS B 104 -176.38 -59.52 REMARK 500 ASN B 111 121.36 -170.05 REMARK 500 ASP B 119 60.16 70.94 REMARK 500 ASP B 150 31.45 -153.94 REMARK 500 THR B 162 77.04 -152.48 REMARK 500 GLN B 164 -85.49 -91.49 REMARK 500 GLN B 165 -67.31 -152.24 REMARK 500 SER B 177 -73.54 -70.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 DRA PEPTIDE + LINKER + HLA-DP2 BETA CHAIN DBREF 3LQZ A 1 181 UNP P20036 DPA1_HUMAN 32 212 DBREF 3LQZ B 4 189 UNP Q5EP54 Q5EP54_HUMAN 33 218 SEQADV 3LQZ ARG B -22 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ LYS B -21 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ PHE B -20 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ HIS B -19 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ TYR B -18 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ LEU B -17 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ PRO B -16 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ PHE B -15 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ LEU B -14 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ PRO B -13 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ SER B -12 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ THR B -11 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B -10 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B -9 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ SER B -8 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ LEU B -7 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ VAL B -6 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ PRO B -5 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ ARG B -4 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B -3 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ SER B -2 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B -1 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B 0 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B 1 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ GLY B 2 UNP Q5EP54 SEE REMARK 999 SEQADV 3LQZ SER B 3 UNP Q5EP54 SEE REMARK 999 SEQRES 1 A 181 ILE LYS ALA ASP HIS VAL SER THR TYR ALA ALA PHE VAL SEQRES 2 A 181 GLN THR HIS ARG PRO THR GLY GLU PHE MET PHE GLU PHE SEQRES 3 A 181 ASP GLU ASP GLU MET PHE TYR VAL ASP LEU ASP LYS LYS SEQRES 4 A 181 GLU THR VAL TRP HIS LEU GLU GLU PHE GLY GLN ALA PHE SEQRES 5 A 181 SER PHE GLU ALA GLN GLY GLY LEU ALA ASN ILE ALA ILE SEQRES 6 A 181 LEU ASN ASN ASN LEU ASN THR LEU ILE GLN ARG SER ASN SEQRES 7 A 181 HIS THR GLN ALA THR ASN ASP PRO PRO GLU VAL THR VAL SEQRES 8 A 181 PHE PRO LYS GLU PRO VAL GLU LEU GLY GLN PRO ASN THR SEQRES 9 A 181 LEU ILE CYS HIS ILE ASP LYS PHE PHE PRO PRO VAL LEU SEQRES 10 A 181 ASN VAL THR TRP LEU CYS ASN GLY GLU LEU VAL THR GLU SEQRES 11 A 181 GLY VAL ALA GLU SER LEU PHE LEU PRO ARG THR ASP TYR SEQRES 12 A 181 SER PHE HIS LYS PHE HIS TYR LEU THR PHE VAL PRO SER SEQRES 13 A 181 ALA GLU ASP PHE TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 181 LEU ASP GLN PRO LEU LEU LYS HIS TRP GLU ALA GLN SEQRES 1 B 212 ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER THR GLY SEQRES 2 B 212 GLY SER LEU VAL PRO ARG GLY SER GLY GLY GLY GLY SER SEQRES 3 B 212 PRO GLU ASN TYR LEU PHE GLN GLY ARG GLN GLU CYS TYR SEQRES 4 B 212 ALA PHE ASN GLY THR GLN ARG PHE LEU GLU ARG TYR ILE SEQRES 5 B 212 TYR ASN ARG GLU GLU PHE VAL ARG PHE ASP SER ASP VAL SEQRES 6 B 212 GLY GLU PHE ARG ALA VAL THR GLU LEU GLY ARG PRO ASP SEQRES 7 B 212 GLU GLU TYR TRP ASN SER GLN LYS ASP ILE LEU GLU GLU SEQRES 8 B 212 GLU ARG ALA VAL PRO ASP ARG MET CYS ARG HIS ASN TYR SEQRES 9 B 212 GLU LEU GLY GLY PRO MET THR LEU GLN ARG ARG VAL GLN SEQRES 10 B 212 PRO ARG VAL ASN VAL SER PRO SER LYS LYS GLY PRO LEU SEQRES 11 B 212 GLN HIS HIS ASN LEU LEU VAL CYS HIS VAL THR ASP PHE SEQRES 12 B 212 TYR PRO GLY SER ILE GLN VAL ARG TRP PHE LEU ASN GLY SEQRES 13 B 212 GLN GLU GLU THR ALA GLY VAL VAL SER THR ASN LEU ILE SEQRES 14 B 212 ARG ASN GLY ASP TRP THR PHE GLN ILE LEU VAL MET LEU SEQRES 15 B 212 GLU MET THR PRO GLN GLN GLY ASP VAL TYR THR CYS GLN SEQRES 16 B 212 VAL GLU HIS THR SER LEU ASP SER PRO VAL THR VAL GLU SEQRES 17 B 212 TRP LYS ALA GLN MODRES 3LQZ ASN B 19 ASN GLYCOSYLATION SITE MODRES 3LQZ ASN A 118 ASN GLYCOSYLATION SITE MODRES 3LQZ ASN A 78 ASN GLYCOSYLATION SITE HET NAG A 182 14 HET NAG A 183 14 HET NAG B 190 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 3(C8 H15 N O6) HELIX 1 1 LEU A 45 GLN A 50 1 6 HELIX 2 2 GLU A 55 ARG A 76 1 22 HELIX 3 3 THR B 49 LEU B 51 5 3 HELIX 4 4 GLY B 52 SER B 61 1 10 HELIX 5 5 GLN B 62 VAL B 72 1 11 HELIX 6 6 ARG B 75 LEU B 89 1 15 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N TYR A 33 O VAL A 42 SHEET 3 A 8 GLY A 20 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 GLN A 14 -1 N ALA A 10 O MET A 23 SHEET 5 A 8 LEU B 8 ALA B 17 -1 O CYS B 15 N SER A 7 SHEET 6 A 8 GLN B 22 TYR B 30 -1 O ILE B 29 N GLN B 10 SHEET 7 A 8 GLU B 33 ASP B 39 -1 O GLU B 33 N TYR B 30 SHEET 8 A 8 PHE B 45 ALA B 47 -1 O ARG B 46 N ARG B 37 SHEET 1 B 4 GLU A 88 PRO A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 VAL A 132 GLU A 134 -1 N ALA A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 PRO A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O HIS A 146 SHEET 1 D 4 GLU A 126 LEU A 127 0 SHEET 2 D 4 ASN A 118 CYS A 123 -1 N CYS A 123 O GLU A 126 SHEET 3 D 4 TYR A 161 GLU A 166 -1 O GLU A 166 N ASN A 118 SHEET 4 D 4 LEU A 174 TRP A 178 -1 O LYS A 176 N CYS A 163 SHEET 1 E 4 VAL B 99 SER B 100 0 SHEET 2 E 4 LEU B 112 PHE B 120 -1 O VAL B 114 N SER B 100 SHEET 3 E 4 PHE B 153 GLU B 160 -1 O ILE B 155 N VAL B 117 SHEET 4 E 4 VAL B 141 SER B 142 -1 N VAL B 141 O MET B 158 SHEET 1 F 4 VAL B 99 SER B 100 0 SHEET 2 F 4 LEU B 112 PHE B 120 -1 O VAL B 114 N SER B 100 SHEET 3 F 4 PHE B 153 GLU B 160 -1 O ILE B 155 N VAL B 117 SHEET 4 F 4 ILE B 146 ARG B 147 -1 N ILE B 146 O GLN B 154 SHEET 1 G 4 GLN B 134 GLU B 135 0 SHEET 2 G 4 ILE B 125 LEU B 131 -1 N LEU B 131 O GLN B 134 SHEET 3 G 4 TYR B 169 HIS B 175 -1 O GLN B 172 N ARG B 128 SHEET 4 G 4 THR B 183 TRP B 186 -1 O VAL B 184 N CYS B 171 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.06 SSBOND 2 CYS B 15 CYS B 77 1555 1555 2.06 SSBOND 3 CYS B 115 CYS B 171 1555 1555 2.05 LINK ND2 ASN A 78 C1 NAG A 183 1555 1555 1.46 LINK ND2 ASN A 118 C1 NAG A 182 1555 1555 1.46 LINK ND2 ASN B 19 C1 NAG B 190 1555 1555 1.45 CISPEP 1 PHE A 113 PRO A 114 0 -0.90 CISPEP 2 TYR B 121 PRO B 122 0 -1.30 CRYST1 157.282 157.282 61.805 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006362 0.003673 0.000000 0.00000 SCALE2 0.000000 0.007347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016172 0.00000